Effect of Single Nucleotide Polymorphisms in IGFBP2 and IGFBP3 Genes on Litter Size Traits in Berkshire Pigs

References

• Quinton V, Wilton JW, Robinson JA, Mathur PK. Economic weights for sow productivity traits in nucleus pig populations. Livestock Sci. 2006;99(1):69–77.
   Web of Science ®Google Scholar
• Argente M-J. Major components in limiting litter size, in insights from animal reproduction. London, UK: InTech; 2016.
   Google Scholar
• Prayaga K, Eady S. Factors affecting litter size and birth weight in rabbits. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics; Queenstown, NewZealand, 2001.
   Google Scholar
• Sanchez-Davila, F., Bernal-Barragán H, Padilla-Rivas G, Del Bosque-González AS, Vázquez-Armijo JF, Ledezma-Torres RA. Environmental factors and ram influence litter size, birth, and weaning weight in Saint Croix hair sheep under semi-arid conditions in Mexico. Trop Anim Health Prod. 2015;47(5):825–31.
   PubMed Web of Science ®Google Scholar
• Nielsen B, Su G, Lund MS, Madsen P. Selection for increased number of piglets at d 5 after farrowing has increased litter size and reduced piglet mortality. J Anim Sci. 2013;91(6):2575–82.
   PubMed Web of Science ®Google Scholar
• Hellbrugge B, Tölle KH, Bennewitz J, Henze C, Presuhn U, Krieter J. Genetic aspects regarding piglet losses and the maternal behaviour of sows. Part 1. Genetic analysis of piglet mortality and fertility traits in pigs. Animal. 2008;2(9):1273–80.
   PubMed Web of Science ®Google Scholar
• Barbosa L, Sávio Lopes P, Regazzi AJ, de Almeida Torres R, Santana Júnior ML, Veroneze R. Estimation of variance components, genetic parameters and genetic trends for litter size of swines. Revista Brasileira de Zootecnia. 2010;39(10):2155–59.
   Web of Science ®Google Scholar
• Wang X, Liu X, Deng D, Yu M, Li X. Genetic determinants of pig birth weight variability. BMC Genet. 2016;17(Suppl 1):15.
   PubMedGoogle Scholar
• Ajayi B., Akinokun J. Evaluation of some litter traits and heritability estimates of Nigerian Indigenous pigs. Int J Appl Agric Apiculture Res. 2013;9(1–2):113–19.
   Google Scholar
• Putz AM, Tiezzi F, Maltecca C, Gray KA, Knauer MT. Variance component estimates for alternative litter size traits in swine. J Anim Sci. 2015;93(11):5153–63.
   PubMed Web of Science ®Google Scholar
• Banville M, Riquet J, Bahon D, Sourdioux M, Canario L. Genetic parameters for litter size, piglet growth and sow’s early growth and body composition in the Chinese–European line Tai Zumu. J Anim Breeding Genet. 2015;132(4):328–37.
   PubMed Web of Science ®Google Scholar
• Lee SH, Choi YM, Choe JH, Kim JM, Hong KC, Park HC, Kim BC. Association between polymorphisms of the heart fatty acid binding protein gene and intramuscular fat content, fatty acid composition, and meat quality in Berkshire breed. Meat Sci. 2010;86(3):794–800.
   PubMed Web of Science ®Google Scholar
• Vallet J, Freking BA, Miles JR, Nienaber JA, Brown-Brandl TM. Factors affecting litter size in pigs. In: Proceedings of National Swine Improvement Federation (NSIF) conference and annual meeting; Nashville, USA, 2006.
   Google Scholar
• Laliotis GP, Marantidis A, Avdi M. Association of BF, RBP4, and ESR2 genotypes with litter size in an autochthonous pig population. Anim Biotechnol. 2017;28(2):138–43.
   PubMed Web of Science ®Google Scholar
• Lan J, Zhao J, Liu Y. Molecular cloning, sequence characterization, polymorphism and association analysis of porcine ROPN1 gene. Mol Biol Rep. 2012;39(3):2739–43.
   PubMed Web of Science ®Google Scholar
• Zhang L, Wang L, Li Y, Li W, Yan H, Liu X, Zhao K, Wang L. Substitution within erythropoietin receptor gene D1 domain associated with litter size in Beijing Black pig, Sus scrofa. Anim Sci J. 2011;82(5):627–32.
   PubMed Web of Science ®Google Scholar
• Niu BY, Ye LZ, Li FE, Deng CY, Jiang SW, Lei MG, Xiong YZ. Identification of polymorphism and association analysis with reproductive traits in the porcine RNF4 gene. Anim Reprod Sci. 2009;110(3–4):283–92.
   PubMed Web of Science ®Google Scholar
• Rinderknecht E., Humbel RE. The amino acid sequence of human insulin-like growth factor I and its structural homology with proinsulin. J Biol Chem. 1978;253(8):2769–76.
   PubMed Web of Science ®Google Scholar
• Daughaday WH, Parker KA, Borowsky S, Trivedi B, Kapadia M. Measurement of somatomedin-related peptides in fetal, neonatal, and maternal rat serum by insulin-like growth factor (IGF) I radioimmunoassay, IGF-II radioreceptor assay (RRA), and multiplication-stimulating activity RRA after acid-ethanol extraction. Endocrinology. 1982;110(2):575–81.
   PubMed Web of Science ®Google Scholar
• Rechler MM, Nissley SP, King GL, Moses AC, Van Obberghen-Schilling EE, Romanus JA, Knight AB, Short PA, White RM. Multiplication stimulating activity (MSA) from the BRL 3A rat liver cell line: relation to human somatomedins and insulin. J Supramol Struct Cell Biochem. 1981;15(3):253–86.
   PubMedGoogle Scholar
• Baxter RC, Martin JL. Binding proteins for insulin-like growth factors in adult rat serum. Comparison with other human and rat binding proteins. Biochem Biophys Res Commun. 1987;147(1):408–15.
   Google Scholar
• Martin JL, Willetts KE, Baxter RC. Purification and properties of a novel insulin-like growth factor-II binding protein from transformed human fibroblasts. J Biol Chem. 1990;265(7):4124–30.
   PubMed Web of Science ®Google Scholar
• Rajah R, Katz L, Nunn S, Solberg P, Beers T, Cohen P. Insulin-like growth factor binding protein (IGFBP) proteases: functional regulators of cell growth. Prog Growth Factor Res. 1995;6(2–4):273–84.
   PubMedGoogle Scholar
• Nyegaard M, Overgaard MT, Su Y-Q, Hamilton AE, Kwintkiewicz J, Hsieh M, Nayak NR, Conti M, Conover CA, Giudice LC. Lack of functional pregnancy-associated plasma protein-A (PAPPA) compromises mouse ovarian steroidogenesis and female fertility. Biol Reprod. 2010;82(6):1129–38.
   PubMed Web of Science ®Google Scholar
• Fazleabas, AT, Kim JJ, Strakova Z. Implantation: embryonic signals and the modulation of the uterine environment: a review. Placenta. 2004;25(Suppl A):S26–31.
   PubMedGoogle Scholar
• Zhou J, Li W, Kamei H, Duan C. Duplication of the IGFBP-2 gene in teleost fish: protein structure and functionality conservation and gene expression divergence. PLoS One. 2008;3(12):e3926.
   PubMed Web of Science ®Google Scholar
• Smith WJ, Nam TJ, Underwood LE, Busby WH, Celnicker A, Clemmons DR. Use of insulin-like growth factor-binding protein-2 (IGFBP-2), IGFBP-3, and IGF-I for assessing growth hormone status in short children. J Clin Endocrinol Metab. 1993;77(5):1294–99.
   PubMed Web of Science ®Google Scholar
• Zhou J, Bondy C. Insulin-like growth factor-II and its binding proteins in placental development. Endocrinology. 1992;131(3):1230–40.
   PubMed Web of Science ®Google Scholar
• Merkl M, Ulbrich SE, Otzdorff C, Herbach N, Wanke R, Wolf E, Handler J, Bauersachs S. Microarray analysis of equine endometrium at days 8 and 12 of pregnancy. Biol Reprod. 2010;83(5):874–86.
   PubMed Web of Science ®Google Scholar
• Ostrup E, Bauersachs S, Blum H, Wolf E, Hyttel P. Differential endometrial gene expression in pregnant and nonpregnant sows. Biol Reprod. 2010;83(2):277–85.
   PubMed Web of Science ®Google Scholar
• Maslova MA, Smol’nikova VY, Savilova AM, Burmenskaya OV, Bystritskii AA, Tabolova VK, Korneeva IE, Demura TA, Donnikov AE. Profiles of mRNA expression for genes involved in implantation, early and middle phases of secretion stage in human endometrium. Bull Exp Biol Med. 2015;158(6):781–84.
   PubMed Web of Science ®Google Scholar
• Mohan S, Baylink DJ. IGF-binding proteins are multifunctional and act via IGF-dependent and -independent mechanisms. J Endocrinol. 2002;175(1):19–31.
   PubMed Web of Science ®Google Scholar
• Thue T, Buchanan F. A new polymorphism in the cattle IGFBP3 gene. Anim Genet. 2002;33(3):242–42.
   PubMed Web of Science ®Google Scholar
• Othman OE, Alam SS, El-Aziem SHA. Single nucleotide polymorphism in Egyptian cattle insulin-like growth factor binding protein-3 gene. J Genet Eng Biotechnol. 2014;12(2):143–47.
   Google Scholar
• Thatcher WW, Guzeloglu A, Meikle A, Kamimura S, Bilby T, Kowalski AA, Badinga L, Pershing R, Bartolome J, Santos JE. Regulation of embryo survival in cattle. Reprod Suppl. 2003;61:253–66.
   PubMedGoogle Scholar
• Herrler A, von Rango U, Beier HM. Embryo-maternal signalling: how the embryo starts talking to its mother to accomplish implantation. Reprod Biomed Online. 2003;6(2):244–56.
   PubMedGoogle Scholar
• Lee JH, Song K-D, Lee H-K, Cho K-H, Park H-C, Park K-D. Genetic parameters of reproductive and meat quality traits in Korean Berkshire pigs. Asian-Australas J Anim Sci. 2015;28(10):1388–93.
   PubMed Web of Science ®Google Scholar
• Jung WY, Kwon SG, Son M, Cho ES, Lee Y, Kim JH, Kim B-W, Park DH, Hwang JH, Kim TW, et al. RNA-Seq approach for genetic improvement of meat quality in pig and evolutionary insight into the substrate specificity of animal carbonyl reductases. PLoS One. 2012;7(9):e42198.
   PubMed Web of Science ®Google Scholar
• Hayashi K, Carpenter KD, Welsh TH, Burghardt RC, Spicer LJ, Spencer TE. The IGF system in the neonatal ovine uterus. Reproduction. 2005;129(3):337–47.
   PubMed Web of Science ®Google Scholar
• Satterfield MC, Hayashi K, Song G, Black SG, Bazer FW, Spencer TE. Progesterone regulates FGF10, MET, IGFBP1, and IGFBP3 in the endometrium of the ovine uterus. Biol Reprod. 2008;79(6):1226–36.
   PubMed Web of Science ®Google Scholar
• Kumchoo T, Mekchay S. Association of non-synonymous SNPs of OPN gene with litter size traits in pigs. Archiv fuer Tierzucht. 2015;58(2):317.
   Google Scholar
• Sell-Kubiak E, Duijvesteijn N, Lopes MS, Janss LLG, Knol EF, Bijma P, Mulder HA. Genome-wide association study reveals novel loci for litter size and its variability in a large white pig population. BMC Genomics. 2015;16:1049.
   PubMed Web of Science ®Google Scholar
• Drogemuller C, Hamann H, Distl O. Candidate gene markers for litter size in different German pig lines. J Anim Sci. 2001;79(10):2565–70.
   PubMed Web of Science ®Google Scholar
• Freking BA, Lents CA, Vallet JL. Selection for uterine capacity improves lifetime productivity of sows. Anim Reprod Sci. 2016;167:16–21.
   PubMed Web of Science ®Google Scholar
• Pershing R, Dinges AC, Thatcher WW, Badinga L. Plasma and uterine insulin-like growth factor-I (IGF-I) and IGF-binding proteins in lactating dairy cows treated with bovine somatotropin. J Anim Vet Adv. 2003;2:67–73.
   Google Scholar
• Robinson RS, Mann GE, Gadd TS, Lamming GE, Wathes DC. The expression of the IGF system in the bovine uterus throughout the oestrous cycle and early pregnancy. J Endocrinol. 2000;165(2):231–43.
   PubMed Web of Science ®Google Scholar
• Hunt R, Sauna ZE, Ambudkar SV, Gottesman MM, Kimchi-Sarfaty C. Silent (synonymous) SNPs: should we care about them? Methods Mol Biol. 2009;578:23–39.
   PubMedGoogle Scholar
• Sironen AI, Uimari P, Serenius T, Mote B, Rothschild M, Vilkki J. Effect of polymorphisms in candidate genes on reproduction traits in Finnish pig populations. J Anim Sci. 2010;88(3):821–27.
   PubMed Web of Science ®Google Scholar
• Lan X, Zhao M, Zhang C. The novel SNPs of the IGFBP3 gene and their associations with litter size and weight traits in goat (Brief report). Archiv fur Tierzucht. 2007;50(2):223.
   Web of Science ®Google Scholar
• Bale LK, Conover CA. Regulation of insulin-like growth factor binding protein-3 messenger ribonucleic acid expression by insulin-like growth factor I. Endocrinology. 1992;131(2):608–14.
   PubMed Web of Science ®Google Scholar
• Rempel LA, Nonneman DJ, Wise TH, Erkens T, Peelman LJ, Rohrer GA. Association analyses of candidate single nucleotide polymorphisms on reproductive traits in swine. J Anim Sci. 2010;88(1):1–15.
   PubMed Web of Science ®Google Scholar
• Daftary SS, Gore AC. IGF-1 in the brain as a regulator of reproductive neuroendocrine function. Exp Biol Med (Maywood). 2005;230(5):292–306.
   PubMed Web of Science ®Google Scholar
• Lucy MC. Regulation of ovarian follicular growth by somatotropin and insulin-like growth factors in cattle. J Dairy Sci. 2000;83(7):1635–47.
   PubMed Web of Science ®Google Scholar
• Ghazal S, McKinnon B, Zhou J, Mueller M, Men Y, Yang L, Mueller M, Flannery C, Huang Y, Taylor HS. H19 lncRNA alters stromal cell growth via IGF signaling in the endometrium of women with endometriosis. EMBO Mol Med. 2015;7(8):996–1003.
   PubMed Web of Science ®Google Scholar
• Ivanga M, Labrie Y, Calvo E, Belleau P, Martel C, Luu-The V, Morissette J, Labrie F, Durocher F. Temporal analysis of E2 transcriptional induction of PTP and MKP and downregulation of IGF-I pathway key components in the mouse uterus. Physiol Genomics. 2007;29(1):13–23.
   PubMed Web of Science ®Google Scholar
• Jeong W, Song G, Bazer FW, Kim J. Insulin-like growth factor I induces proliferation and migration of porcine trophectoderm cells through multiple cell signaling pathways, including protooncogenic protein kinase 1 and mitogen-activated protein kinase. Mol Cell Endocrinol. 2014;384(1–2):175–84.
   PubMed Web of Science ®Google Scholar
• Giudice LC. Endometrium in PCOS: implantation and predisposition to endocrine CA. Best Pract Res Clin Endocrinol Metab. 2006;20(2):235–44.
   PubMed Web of Science ®Google Scholar