156
Views
0
CrossRef citations to date
0
Altmetric
Articles

Target gene identification and functional characterization of miR-1704 in chicken

, , , , , , , & show all

References

  • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function[J]. Cell. 2004;116(2):281–297.
  • Sun K, Lai EC. Adult-specific functions of animal microRNAs[J]. Nat Rev Genet. 2013;14(8):535–548.
  • Paicu C, Mohorianu I, Stocks M, et al. miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets[J]. Bioinformatics. 2017;33(16):2446–2454.
  • He P, Wei P, Zhang B, et al. Identification of microRNAs involved in cold adaptation of Litopenaeus vannamei by high-throughput sequencing[J]. Gene 2018;677:24–31.
  • Ambros V. The functions of animal microRNAs[J]. Nature. 2004;431(7006):350–355.
  • Hayes J, Peruzzi PP, Lawler S. MicroRNAs in cancer: biomarkers, functions and therapy[J]. Trends Mol Med. 2014;20(8):460–469.
  • Mishra PJ. Non-coding RNAs as clinical biomarkers for cancer diagnosis and prognosis[J]. Expert Rev Mol Diagn. 2014;14(8):917–919.
  • Nakamura K, Sawada K, Yoshimura A, et al. Clinical relevance of circulating cell-free microRNAs in ovarian cancer[J]. Mol Cancer. 2016;15(1):48.
  • Fabian MR, Sonenberg N, Filipowicz W. Regulation of mRNA translation and stability by microRNAs[J]. Annu Rev Biochem. 2010;79:351–379.
  • Kuhn DE, Martin MM, Feldman DS, et al. Experimental validation of miRNA targets[J]. Methods. 2008;44(1):47–54.
  • Li Z, Tzeng CM. Integrated analysis of miRNA and mRNA expression profiles to identify miRNA targets[J]. Methods Mol Biol. 2018;1720:141–148.
  • Lai EC. Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation[J]. Nat Genet. 2002;30(4):363–364.
  • Shastry BS. SNPs: impact on gene function and phenotype[. Methods Mol Biol. 2009;578:3–22.
  • Sun G, Yan J, Noltner K, et al. SNPs in human miRNA genes affect biogenesis and function[J]. RNA. 2009;15(9):1640–1651.
  • Lee HC, Yang CW, Chen CY, et al. Single point mutation of microRNA may cause butterfly effect on alteration of global gene expression[J]. Biochem Biophys Res Commun. 2011;404(4):1065–1069.
  • Jazdzewski K, Murray EL, Franssila K, et al. Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma[J]. Proc Natl Acad Sci U S A. 2008;105(20):7269–7274.
  • Locke JM, Lango AH, Harries LW. A rare SNP in pre-miR-34a is associated with increased levels of miR-34a in pancreatic beta cells[J]. Acta Diabetol. 2014;51(2):325–329.
  • Lei B, Gao S, Luo LF, et al. A SNP in the miR-27a gene is associated with litter size in pigs[J]. Mol Biol Rep. 2011;38(6):3725–3729.
  • Dong X, Park S, Lin X, et al. Irs1 and Irs2 signaling is essential for hepatic glucose homeostasis and systemic growth[J]. J Clin Invest. 2006;116(1):101–114.
  • White MF. IRS2 integrates insulin/IGF1 signalling with metabolism, neurodegeneration and longevity[J]. Diabetes Obes Metab. 2014;16 (Suppl 1):4–15.
  • Davalos A, Goedeke L, Smibert P, et al. miR-33a/b contribute to the regulation of fatty acid metabolism and insulin signaling[J]. Proc Natl Acad Sci U S A. 2011;108(22):9232–9237.
  • Agarwal P, Srivastava R, Srivastava AK, et al. miR-135a targets IRS2 and regulates insulin signaling and glucose uptake in the diabetic gastrocnemius skeletal muscle[J]. Biochim Biophys Acta. 2013;1832(8):1294–1303.
  • Crepin D, Benomar Y, Riffault L, et al. The over-expression of miR-200a in the hypothalamus of ob/ob mice is linked to leptin and insulin signaling impairment[J]. Mol Cell Endocrinol. 2014;384(1–2):1–11.
  • Li H, Ji J, Xie Q, et al. Aberrant expression of liver microRNA in chickens infected with subgroup J avian leukosis virus[J]. Virus Res. 2012;169(1):268–271.
  • Han RL, Lan XY, Zhang LZ, et al. A novel single-nucleotide polymorphism of the visfatin gene and its associations with performance traits in the chicken[J]. J Appl Genet. 2010;51(1):59–65.
  • Han RL, Li ZJ, Li MJ, et al. Novel 9-bp indel in visfatin gene and its associations with chicken growth[J]. Br Poult Sci. 2011;52(1):52–57.
  • Li WY, Liu DL, Tang SQ, et al. A multiallelic indel in the promoter region of the Cyclin-dependent kinase inhibitor 3 gene is significantly associated with body weight and carcass traits in chickens[J]. Poult Sci. 2019;98(2):556–565.
  • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction[J]. Nucleic Acids Res. 2003;31(13):3406–3415.
  • Lewis BP, Shih IH, Jones-Rhoades MW, et al. Prediction of mammalian microRNA targets[J]. Cell. 2003;115(7):787–798.
  • Boyle EI, Weng S, Gollub J, et al. GO::TermFinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes]. Bioinformatics. 2004;20(18):3710–3715.
  • Gong J, Tong Y, Zhang HM, et al. Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis[J]. Hum Mutat. 2012;33(1):254–263.
  • Zorc M, Skok DJ, Godnic I, et al. Catalog of microRNA seed polymorphisms in vertebrates[J]. PLoS One 2012;7(1):e30737.
  • Wang SH, Wang SH, Li H, et al. SNP in pre-miR-1666 decreases mature miRNA expression and is associated with chicken performance[J]. Genome. 2015;58(2):81–90.
  • Li H, Wang S, Yan F, et al. Effect of polymorphism within miRNA-1606 gene on growth and carcass traits in chicken[J]. Gene. 2015;566(1):8–12.
  • Wang XY, Yang Q, Wang K, et al. A novel 12-bp indel polymorphism within the GDF9 gene is significantly associated with litter size and growth traits in goats[J]. Anim Genet. 2017;48(6):735–736.
  • Cui Y, Yan H, Wang K, et al. Insertion/deletion within the KDM6A gene is significantly associated with litter size in goat[J]. Front Genet. 2018;9:91.
  • Huang YZ, Zhang EP, Chen H, et al. Novel 12-bp deletion in the coding region of the bovine NPM1 gene affects growth traits[J]. J Appl Genet. 2010;51(2):199–202.
  • Huang YZ, Sun JJ, Zhang LZ, et al. Genome-wide DNA methylation profiles and their relationships with mRNA and the microRNA transcriptome in bovine muscle tissue (Bos taurine) [J]. Sci Rep. 2014;4(6546):1–17.
  • Borel C, Antonarakis SE. Functional genetic variation of human miRNAs and phenotypic consequences[J]. Mamm Genome. 2008;19(7–8):503–509.
  • Kubota N, Terauchi Y, Tobe K, et al. Insulin receptor substrate 2 plays a crucial role in beta cells and the hypothalamus[J]. J Clin Invest. 2004;114(7):917–927.
  • Withers DJ. Insulin receptor substrate proteins and neuroendocrine function[J]. Biochim Soc Trans. 2001;29(4):525–529.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.