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Articles

Evaluation of genetic diversity and population structure in four indigenous duck breeds in Vietnam

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References

  • Groeneveld L, Lenstra J, Eding H, et al. Genetic diversity in farm animals–a review. Animal Genet. 2010;41:6–31.
  • Ibeagha-Awemu EM, Peters SO, Bemji MN, Adeleke MA, Do DN. Leveraging available resources and stakeholder involvement for improved productivity of African livestock in the era of genomic breeding. Front Genet. 2019;10:357.
  • Yang W, Kang X, Yang Q, Lin Y, Fang M. Review on the development of genotyping methods for assessing farm animal diversity. J Anim Sci Biotechnol. 2013;4(1):2.
  • Vieira MLC, Santini L, Diniz AL, Munhoz C. d F. Microsatellite markers: what they mean and why they are so useful. Genet Mol Biol. 2016;39(3):312–328.
  • Henning J, Henning KA, Long NT, Ha NT, Vu Le T, Meers J. Characteristics of two duck farming systems in the Mekong Delta of Viet Nam: stationary flocks and moving flocks, and their potential relevance to the spread of highly pathogenic avian influenza. Trop Anim Health Prod. 2013;45(3):837–848.
  • Meyer A, Dinh T, Han T, et al. Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam. Transbound Emerg Dis. 2018;65(2):408–419.
  • Lestari Wibawa H, Lubis EP, Dharmawan R, et al. Co-circulation and characterization of HPAI-H5N1 and LPAI-H9N2 recovered from a duck farm, Yogyakarta, Indonesia. Transbound Emerg Dis. 2020;67:994–1007.
  • Bui VN, Ogawa H, Trinh DQ, et al. Genetic characterization of an H5N1 avian influenza virus from a vaccinated duck flock in Vietnam. Virus Genes. 2014;49(2):278–285.
  • Ramey AM, Poulson RL, González-Reiche AS, Perez DR, Stallknecht DE, Brown JD. Genomic characterization of H14 subtype influenza A viruses in new world waterfowl and experimental infectivity in mallards (Anas platyrhynchos). PLoS One. 2014;9(5):e95620.
  • Huang Y, Tu J, Cheng X, et al. Characterization of 35 novel microsatellite DNA markers from the duck (Anas platyrhynchos) genome and cross-amplification in other birds. Genet Sel Evol. 2005;37(4):455–472.
  • Su Y, Long R, Chen G, Wu X, Xie K, Wan J. Genetic analysis of six endangered local duck populations in China based on microsatellite markers. J Genet Genom. 2007;34(11):1010–1018.
  • Hui-Fang L, Wei-Tao S, Jing-Ting S, et al. Genetic diversity and population structure of 10 Chinese indigenous egg-type duck breeds assessed by microsatellite polymorphism. J Genet. 2010;89(1):65–72.
  • Seo D, Bhuiyan MS, Sultana H, Heo JM, Lee JH. Genetic diversity analysis of south and east Asian duck populations using highly polymorphic microsatellite markers. Asian-Australas J Anim Sci. 2016;29(4):471–478.
  • FAO. FAO statistics 2018. http://www.fao.org/statistics/en/. Accessed in April, 2020.
  • Nind L, Tu TD. Traditional systems of duck farming and duck egg incubation in South Vietnam. Poultry Sci J. 1998;54(4):375–384.
  • Minh PQ, Stevenson M, Schauer B, Morris R, Quy TD. A description of the management of itinerant grazing ducks in the Mekong River Delta of Vietnam. Prev Vet Med. 2010;94(1–2):101–107.
  • Duc NV, Long T. Poultry Production Systems in Vietnam. Rome: Food and agriculture organization. Rome, Italy: FAO; 2008. GCP/RAS/228/GER Working Paper No. 4.
  • Berthouly C, Do Ngoc D, Thevenon S, et al. How does farmer connectivity influence livestock genetic structure? A case-study in a Vietnamese goat population. Mol Ecol. 2009;18(19):3980–3991.
  • Pham L, Do DN, Nam L, et al. Molecular genetic diversity and genetic structure of Vietnamese indigenous pig populations. J Anim Breed Genet. 2014;131(5):379–386.
  • Van Ba N, Nam LQ, Do DN, Van Hau N, Pham LD. An assessment of genetic diversity and population structures of fifteen Vietnamese indigenous pig breeds for supporting the decision making on conservation strategies. Trop Anim Health Prod. 2020;52(3):1033–1041.
  • Pham LD, Do DN, Binh NT, et al. Assessment of genetic diversity and population structure of Vietnamese indigenous cattle populations by microsatellites. Livestock Sci. 2013;155(1):17–22.
  • Pham M, Berthouly ‐Salazar C, Tran X, et al. Genetic diversity of Vietnamese domestic chicken populations as decision-making support for conservation strategies. Anim Genet. 2013;44(5):509–521.
  • Maak S, Neumann K, von Lengerken G, Gattermann R. First seven microsatellites developed for the Peking duck (Anas platyrhynchos). Anim Genet. 2000;31(3):233.
  • Wu Y, Liu X-L, Hou S-S, Huang W. Study on genetic diversity of six duck populations with microsatellite DNA. Asian Australas J Anim Sci. 2008;21(6):776–783.
  • Alyethodi R, Kumar S. Genetic characterization of Moti Indian native duck using microsatellite markers. J Appl Animal Res. 2010;38(2):223–227.
  • Liu Y, Keller I, Heckel G. Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity. 2012;109(2):108–116.
  • Weir BS, Cockerham CC. Estimating F-statistics for the analysis of population structure. Evolution. 1984;38(6):1358–1370.
  • Goudet J. FSTAT (version 1.2): a computer program to calculate F-statistics. J Heredity. 1995;86(6):485–496.
  • Raymond M, Rousset F. GENEPOP a population genetics software for exact tests and ecumenicism, version 2. J Heredity. 1995;86(3):248–259.
  • Paradis E, Schliep K. ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics. 2019;35(3):526–238.
  • Jombart T. adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics. 2008;24(11):1403–1405.
  • Hariyono DNH, Maharani D, Cho S, et al. Genetic diversity and phylogenetic relationship analyzed by microsatellite markers in eight Indonesian local duck populations. Asian-Australas J Anim Sci. 2019;32(1):31–37.
  • Xiao TF, Ke LY, Zhang L, Jiang XB. Genetic diversity of duck breeds: a study with microsatellite markers. Ying Yong Sheng Tai Xue Bao. 2009;20(1):190–196.
  • Lai FY, Chang YY, Chen YC, et al. Monitoring of genetic closed Tsaiya duck populations using novel microsatellite markers with high polymorphism. Asian-Australas J Anim Sci. 2020;33(6):888–901.
  • Wright S. 1984. Evolution and the Genetics of Populations, Volume 4: Variability Within and among Natural Populations. Chicago, IL: University of Chicago press.
  • Carcò G, Grajewski B, Cassandro M, Lisowski M, Szwaczkowski T. Genetic variability of some Italian and Polish duck breeds. Ital J Anim Sci. 2018;17(4):899–906.
  • Wu F, Huang Y, Ma Y, Hu S, Hao J, Li N. Evaluation of genetic diversity and relationships within and between two breeds of duck based on microsatellite markers. Prog Nat Sci. 2009;19(11):1581–1586.

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