References
- Hu ZL, Park CA, Wu XL, et al. Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era. Nucleic Acids Res. 2013;41(Database issue):D871–879.
- Klein RJ, Zeiss C, Chew EY, et al. Complement factor H polymorphism in age-related macular degeneration. Science. 2005;308(5720):385–389.
- Depristo MA, Banks E, Poplin R, et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011;43(5):491–498.
- Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14):1754–1760.
- Danecek P, Auton A, Abecasis G, 1000 Genomes Project Analysis Group, et al. The variant call format and VCFtools. Bioinformatics. 2011;27(15):2156–2158.
- Cingolani P, Platts A, Wang LL, et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly. 2012;6(2):80–92.
- Sul JH, Martin LS, Eskin E. Population structure in genetic studies: confounding factors and mixed models. PLoS Genet. 2018;14(12):e1007309.
- Pearson K. On lines and planes of closest fit to systems of points in space. Philos Mag. 1901;2(11):559–572.
- Kumar S, Stecher G, Li M, et al. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–1549.
- Purcell S, Neale B, Todd-Brown K, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 2007;81(3):559–575.
- Price AL, Patterson NJ, Plenge RM, et al. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet. 2006;38(8):904–909.
- Zhou X, Stephens M. Genome-wide efficient mixed-model analysis for association studies. Nat Genet. 2012;44(7):821–824.
- Scheet P, Stephens M. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet. 2006;78(4):629–644.
- Efron B, Tibshirani RJ. An introduction to the bootstrap. Monographs Stat Appl Probab. 1994;
- Pang JL, Yang AM, Cheng M, et al. Correlation and multiple regression analysis between slaughter performance and body size traits of white feather king pigeon. Anim Husbandry Feed Sci. 2021;42(4):42–45.
- Liu J, Zhou J, Li J, et al. Identification of candidate genes associated with slaughter traits in F2 chicken population using genome-wide association study. Anim Genet. 2021;52(4):532–535.