Molecular cloning and characterization of Cu-Zn superoxide dismutase (sod1) gene in brown trout and its expression in response to acute aquaculture stressors

References

• AFD (Agence Francaise De Development). Opportunities and challenges for aquaculture in developing countries. Joint Report, 2017. https://agrinatura-eu.eu/2017/11/opportunities-and-challenges-for-aquaculture-in-developing-countries/. Published 2017.
   Google Scholar
• Cabo J, Alonso R, Mata P. Omega-3 fatty acids and blood pressure. Br J Nutr. 2012;107(S2):S195–S200.
   PubMedGoogle Scholar
• Fuentes N, Kim E, Fan Y-Y, Chapkin RS. Omega-3 fatty acids, membrane remodeling and cancer prevention. Mol Aspects Med. 2018;64:79–91.
   PubMed Web of Science ®Google Scholar
• Kris-Etherton PM, Harris WS, Appel LJ. Fish consumption, fish oil, omega-3 fatty acids, and cardiovascular disease. Circulation. 2002;106(21):2747–2757.
   PubMed Web of Science ®Google Scholar
• Zheng J-S, Huang T, Yang J, Fu Y-Q, Li D. Marine n-3 polyunsaturated fatty acids are ınversely associated with risk of type 2 diabetes in Asians: a systematic review and meta-analysis. PLoS One. 2012;7(9):e44525.
   PubMed Web of Science ®Google Scholar
• Dong H, Lu G, Yan Z, Liu J, Nkoom M, Yang H. Responses of antioxidant and biotransformation enzymes in Carassius carassius exposed to hexabromocyclododecane. Environ Toxicol Pharmacol. 2018;62:46–53.
   PubMed Web of Science ®Google Scholar
• Ghosh N, Das A, Chaffee S, Roy S, Sen CK. 2018. Reactive oxygen species, oxidative damage and cell death. In: Chatterjee S, Jungraithmayr W, Bagchi D, eds. Immunity and Inflammation in Health and Disease. London, UK: Academic Press; 45–55.
   Google Scholar
• Li M, Zheng Y, Liang H, et al. Molecular cloning and characterization of cat, gpx1 and Cu/Zn-sod genes in pengze crucian carp (Carassius auratus var. Pengze) and antioxidant enzyme modulation induced by hexavalent chromium in juveniles. Comp Biochem Physiol C Toxicol Pharmacol. 2013;157(3):310–321.
   PubMed Web of Science ®Google Scholar
• Sun S, Ge X, Zhu J, Xuan F, Jiang X. Identification and mRNA expression of antioxidant enzyme genes associated with the oxidative stress response in the Wuchang bream (Megalobrama amblycephala Yih) in response to acute nitrite exposure. Comp Biochem Physiol C Toxicol Pharmacol. 2014;159:69–77.
   PubMed Web of Science ®Google Scholar
• FAO. The State of World Fisheries and Aquaculture 2020. Sustainability in action. Rome: FAO; 2020.
   Google Scholar
• Alvarez JS, Ward DM. Predation on wild and hatchery salmon by non‐native brown trout (Salmo trutta) in the Trinity River. Ecol Freshw Fish. 2019;28(4):573–585.
   Web of Science ®Google Scholar
• FAO. http://www.fao.org/fishery/culturedspecies/Salmo_trutta/en. Published 2019.
   Google Scholar
• Del Valle G, Taniguchi N. Genetic variation of some physiological traits of clonal ayu (Plecoglossus altivelis) under stressed and non-stressed conditions. Aquaculture. 1995;137(1–4):193–202.
   Web of Science ®Google Scholar
• Anderson WG, McKinley RS, Colavecchia M. The use of clove oil as an anesthetic for rainbow trout and its effects on swimming performance. North Am J Fish Manage. 1997;17(2):301–307.
   Google Scholar
• Vélez-Calabria G, Peñaranda DS, Jover-Cerdá M, Llorens SM, Tomás-Vidal A. Successful inclusion of high vegetable protein sources in feed for rainbow trout without decrement in intestinal health. Animals. 2021;11(12):3577.
   Web of Science ®Google Scholar
• Livingstone DR. Contaminant-stimulated reactive oxygen species production and oxidative damage in aquatic organisms. Mar Pollut Bull. 2001;42(8):656–666.
   PubMed Web of Science ®Google Scholar
• Anderson KC, Elizur A. Hepatic reference gene selection in adult and juvenile female Atlantic salmon at normal and elevated temperatures. BMC Res Notes. 2012;5:21.
   PubMedGoogle Scholar
• Torstensen BE, Nanton A, Olsvik PA, Sundvold H, Stubhaug I. Gene expression of fatty acid transport proteins (cd36 and FATP) and ß-oxidation-related genes in Atlantic salmon (Salmo salar L.) fed fish oil or vegetable oil. Aquac Nutr. 2009;15(4):440–451.
   Web of Science ®Google Scholar
• Nevers Y, Kress A, Defosset A, et al. OrthoInspector 3.0: open portal for comparative genomics. Nucleic Acids Res. 2019;47:411–418.
   Web of Science ®Google Scholar
• Gromiha MM. Protein sequence analysis. In: Protein Bioinformatics: From Sequence to Function. New Delhi, India: Elsevier Inc.; 2010:29–62.
   Google Scholar
• Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33(7):1870–1874.
   PubMed Web of Science ®Google Scholar
• SPSS. IBM SPSS Statistics for Window, Version 20.0. Armonk, NY: SPSS; 2011.
   Google Scholar
• Eissa N, Wang HP. Transcriptional stress responses to environmental and husbandry stressors in aquaculture species. Rev Aquacult. 2016;8(1):61–88.
   Web of Science ®Google Scholar
• Liu Z, Wang L, Zhou Z, et al. The simple neuroendocrine-immune regulatory network in oyster Crassostrea gigas mediates complex functions. Sci Rep. 2016;6(1):26396–26313.
   PubMedGoogle Scholar
• Manduzio H, Rocher B, Durand F, Galap C, Leboulenger F. The point about oxidative stress in molluscs. Invertebr Surviv J. 2005;2(2):91–104.
   Google Scholar
• Pruzzo C, Gallo G, Canesi L. Persistence of vibrios in marine bivalves: the role of interactions with haemolymph components. Environ Microbiol. 2005;7(6):761–772.
   PubMed Web of Science ®Google Scholar
• Tan K, Zhang B, Ma H, Li S, Zheng H. Oxidative stress responses of golden and brown noble scallops Chlamys nobilis to acute cold stress. Fish Shellfish Immunol. 2019;95:349–356.
   PubMed Web of Science ®Google Scholar
• Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994;22(22):4673–4680.
   PubMed Web of Science ®Google Scholar
• Braasch I, Postlethwait JH. Polyploidy in fish and the teleost genome duplication. In: Polyploidy and Genome Evolution. Berlin, Heidelberg: Springer; 2012:341–383.
   Google Scholar
• Parmar MB, Venkatachalam AB, Wright JM. The evolutionary relationship of the transcriptionally active fabp11a (intronless) and fabp11b genes of medaka with fabp11 genes of other teleost fishes. FEBS J. 2012;279(13):2310–2321.
   PubMed Web of Science ®Google Scholar
• Bayır M, Bayır A, Wright JM. Divergent spatial regulation of duplicated fatty acid-binding protein (fabp) genes in rainbow trout (Oncorhynchus mykiss). Comp Biochem Physiol D Genomics Proteomics. 2015;14:26–32.
   PubMed Web of Science ®Google Scholar
• Corvi R. Genomics: an in vitro toxicology point of view. Altern Lab Anim. 2002;30(2_suppl):129–131.
   PubMedGoogle Scholar
• Voelker D, Vess C, Tillmann M, et al. Differential gene expression as a toxicant-sensitive endpoint in zebrafish embryos and larvae. Aquat Toxicol. 2007;81(4):355–364.
   PubMed Web of Science ®Google Scholar
• Cheung CCC, Zheng GJ, Li AMY, Richardson BJ, Lam PKS. Relationships between tissue concentrations of polycyclic aromatic hydrocarbons and antioxidative responses of marine mussels, Perna viridis. Aquat Toxicol. 2001;52(3–4):189–203.
   PubMed Web of Science ®Google Scholar
• Sridevi B, Reddy KV, Reddy SLN. Effect of trivalent and hexavalent chromium on antioxidant enzyme activities and lipid peroxidation in a freshwater field crab, Barytelphusa guerini. Bull Environ Contam Toxicol. 1998;61(3):384–390.
   PubMed Web of Science ®Google Scholar
• Thomas P, Wofford HW. Effects of cadmium and Aroclor 1254 on lipid peroxidation, glutathione peroxidase activity, and selected antioxidants in Atlantic croaker tissues. Aquat Toxicol. 1993;27(1–2):159–177.
   Web of Science ®Google Scholar
• Winston GW. Oxidants and antioxidants in aquatic animals. Comp Biochem Physiol C, Comp Pharmacol Toxicol. 1991;100(1–2):173–176.
   PubMed Web of Science ®Google Scholar
• Park K, Kwak IS. The effect of temperature gradients on endocrine signaling and antioxidant gene expression during Chironomus riparius development. Sci Total Environ. 2014;470–471:1003–1011.
   PubMed Web of Science ®Google Scholar
• Özmen İ, Atamanalp M, Bayır A, Sirkecioğlu AN, Cengiz M, Cengiz M. The effects of different stressors on antioxidant enzyme activities in the erythrocyte of rainbow trout (Oncorhynchus mykiss W., 1792). Fressenius Environ Bull. 2007;16:922–927.
   Web of Science ®Google Scholar
• Afifi M, Alkaladi A, Zinada OAA, Couderchet M. Alteration in antioxidant genes expression in some fish caught from Jeddah and Yanbu coast as a bio-indicator of oil hydrocarbons pollution. Saudi J Biol Sci. 2017;24(7):1580–1587.
   PubMed Web of Science ®Google Scholar
• Chen QL, Sun YL, Liu ZH, Li YW. Sex-dependent effects of subacute mercuric chloride exposure on histology, antioxidant status and immune-related gene expression in the liver of adult zebrafish (Danio rerio). Chemosphere. 2017;188:1–9.
   PubMed Web of Science ®Google Scholar
• Demers NE, Bayne CJ. The immediate effects of stress on hormones and plasma lysozyme in rainbow trout. Dev Comp Immunol. 1997;21(4):363–373.
   PubMed Web of Science ®Google Scholar
• Saurabh S, Sahoo PK. Lysozyme: an important defence molecule of fish innate immune system. Aquaculture Res. 2008;39(3):223–239.
   Web of Science ®Google Scholar
• Schieber M, Chandel NS. ROS function in redox signaling and oxidative stress. Curr Biol. 2014;24(10):R453–R462.
   PubMed Web of Science ®Google Scholar
• Apel K, Hirt H. Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol. 2004;55:373–399.
   PubMed Web of Science ®Google Scholar
• Dowling DK, Simmons LW. Reactive oxygen species as universal constraints in life-history evolution. Proc Biol Sci. 2009;276(1663):1737–1745.
   PubMed Web of Science ®Google Scholar
• von Schantz T, Bensch S, Grahn M, Hasselquist D, Wittzell H. Good genes, oxidative stress and condition–dependent sexual signals. Proc R Soc Lond B. 1999;266(1414):1–12.
   PubMed Web of Science ®Google Scholar
• Adeogun AO, Ibor OR, Omiwole R, et al. Sex-differences in physiological and oxidative stress responses and heavy metals burden in the black jaw tilapia, Sarotherodon melanotheron from a tropical freshwater dam (Nigeria). Comp Biochem Physiol C Toxicol Pharmacol. 2020;229:108676.
   PubMed Web of Science ®Google Scholar
• Balaban RS, Nemoto S, Finkel T. Mitochondria, oxidants, and aging. Cell. 2005;120(4):483–495.
   PubMed Web of Science ®Google Scholar
• Bargielowski I, Kaufmann C, Alphey L, Reiter P, Koella J. Flight performance and teneral energy reserves of two genetically-modified and one wild-type strain of the yellow fever mosquito Aedes aegypti. Vector Borne Zoonotic Dis. 2012;12(12):1053–1058.
   PubMed Web of Science ®Google Scholar
• Calkins CO, Parker AG. Sterile insect quality. In: Sterile Insect Technique. Dordrecht: Springer; 2005:269–296.
   Google Scholar
• Powers SK, Kavazis AN, McClung JM. Oxidative stress and disuse muscle atrophy. J Appl Physiol. 2007;102(6):2389–2397.
   PubMed Web of Science ®Google Scholar
• Cnaani A. Genetic perspective on stress response and disease resistance in aquaculture. Israeli J Aquac Bamidgeh. 2006;58(4):375–383.
   Web of Science ®Google Scholar