126
Views
1
CrossRef citations to date
0
Altmetric
Original Articles

EFFECT OF PHOSPHORYLATION ON THE RETENTION BEHAVIOR OF PEPTIDES IN ION PAIRING REVERSED-PHASE HPLC BASED ON A PREDICTION MODEL

, , , &
Pages 733-747 | Published online: 24 Mar 2010

REFERENCES

  • Blume-Jensen , P. ; Hunter , T. Oncogenic kinase signalling . Nature 2001 , 411 , 355 – 365 .
  • Hermiston , M.L. ; Xu , Z. ; Weiss , A. CD45: A critical regulator of signaling thresholds in immune cells . Annu. Rev. Immunol. 2003 , 21 , 107 – 137 .
  • Lee , H.G. ; Perry , G. ; Moreira , P.I. ; Garrett , M.R. ; Liu , Q. ; Zhu , X.W. ; Takeda , A. ; Nunomura , A. ; Smith , M.A. Tau phosphorylation in Alzheimer's disease: pathogen or protector? Trends Mol. Med. 2005 , 11 , 164 – 169 .
  • Graves , J.D. ; Krebs , E.G. Protein phosphorylation and signal transduction . Pharmacol. Ther. 1999 , 82 , 111 – 121 .
  • Hunter , T. Signaling - 2000 and beyond . Cell 2000 , 100 , 113 – 127 .
  • Manning , G. ; Whyte , D.B. ; Martinez , R. ; Hunter , T. ; Sudarsanam , S. The protein kinase complement of the human genome . Science 2002 , 298 , 1912 – 1934 .
  • McCormick , D.J. ; Holmes , M.W. ; Muddiman , D.C. ; Madden , B.J. Mapping sites of protein phosphorylation by mass spectrometry utilizing a chemical enzymatic approach: characterization of products from alpha-S1Casein phosphopeptides . J. Proteome Res. 2005 , 4 , 424 – 434 .
  • Yan , J.X. ; Packer , N.H. ; Gooley , A.A. ; Williams , K.L. Protein phosphorylation: technologies for the identification of phosphoamino acids . J. Chromatogr. A 1998 , 808 , 23 – 41 .
  • McLachlin , D.T. ; Chait , B.T. Analysis of phosphorylated proteins and peptides by mass spectrometry . Curr. Opin. Chem. Biol. 2001 , 5 , 591 – 602 .
  • Beausoleil , S.A. ; Jedrychowski , M. ; Schwartz , D. ; Elias , J.E. ; Villen , J. ; Li , J.X. ; Cohn , M.A. ; Cantley , L.C. ; Gygi , S.P. Large-scale characterization of HeLa cell nuclear phosphoproteins . Proc. Natl. Acad. Sci. USA 2004 , 101 , 12130 – 12135 .
  • Aebersold , R. ; Goodlett , D.R. Mass spectrometry in proteomics . Chem. Rev. 2001 , 101 , 269 – 295 .
  • Cantin , G.T. ; Yates , J.R. Strategies for shotgun identification of post-translational modifications by mass spectrometry . J. Chromatogr. A 2004 , 1053 , 7 – 14 .
  • Garcia , B.A. ; Shabanowitz , J. ; Hunt , D.F. Analysis of protein phosphorylation by mass spectrometry . Methods 2005 , 35 , 256 – 264 .
  • Hoffmann , R. ; Segal , M. ; Otvos , L. Separation of sets of mono- and diphosphorylated peptides by reversed-phase high performance liquid chromatography . Anal. Chim. Acta 1997 , 352 , 327 – 333 .
  • Tholey , A. ; Toll , H. ; Huber , C.G. Separation and detection of phosphorylated and nonphosphorylated peptides in liquid chromatography–mass spectrometry using monolithic columns and acidic or alkaline mobile phases . Anal. Chem. 2005 , 77 , 4618 – 4625 .
  • Kim , J. ; Petritis , K. ; Shen , W. ; Camp , D.G. ; Moore , R.J. ; Smith , R.D. Phosphopeptide elution times in reversed-phase liquid chromatography. J. Chromatogr. A 2007, 1172, 9–18.
  • Steen , H. ; Jebanathirajah , J.A. ; Rush , J. ; Morrice , N. ; Kirschner , M.W. Phosphorylation analysis by mass spectrometry – Myths, facts, and the consequences for qualitative and quantitative measurements . Mol. Cell Proteomics 2006 , 5 , 172 – 181 .
  • Krokhin , O.V. ; Craig , R. ; Spicer , V. ; Ens , W. ; Standing , K.G. ; Beavis , R.C. ; Wilkins , J.A. An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC – Its application to protein peptide mapping by off-line HPLC-MALDI MS . Mol. Cell Proteomics, 2004 , 3 , 908 – 919 .
  • Palmblad , M. ; Ramstrom , M. ; Bailey , C.G. ; McCutchen-Maloney , S.L. ; Bergquist , J. ; Zeller , L.C. Protein identification by liquid chromatography–mass spectrometry using retention time prediction . J. Chromatogr. B 2004 , 803 , 131 – 135 .
  • Palmblad , M. ; Ramstrom , M. ; Markides , K.E. ; Hakansson , P. ; Bergquist , J. Prediction of chromatographic retention and protein identification in liquid chromatography/mass spectrometry . Anal. Chem, 2002 , 74 , 5826 – 5830 .
  • Su , R.X. ; Qi , W. ; He , Z.M. ; Yuan , S.X. ; Zhang , Y.B. Pancreatic hydrolysis of bovine casein: Identification and release kinetics of phosphopeptides . Food Chem. 2007 , 104 , 276 – 286 .
  • Su , R.X. ; Qi , W. ; He , Z.M. Time-dependent nature in peptic hydrolysis of native bovine hemoglobin . Eur. Food Res. Technol. 2007 , 225 , 637 – 647 .
  • Liebler , D.C. ; Hansen , B.T. ; Davey , S.W. ; Tiscareno , L. ; Mason , D.E. Peptide sequence motif analysis of tandem MS data with the SALSA algorithm . Anal. Chem. 2002 , 74 , 203 – 210 .
  • Eng , J.K. ; McCormack , A.L. ; Yates , J.R. An approach to correlate tandem mass spectral data of peptides with amino-acid-sequences in a protein database . J. Am. Soc. Mass Spectrom. 1994 , 5 , 976 – 989 .
  • Guo , D. ; T., M.C. ; Taneja , A.K. ; Parker , J.M.R. ; Hodges , R.S. Prediction of peptide retention times in reversed-phase high-performance liquid chromatography I . Determination of retention coefficients of amino acid residues of model sythetic peptides. J. Chromatogr. 1986 , 359 , 499 – 517 .
  • Meek , J.L. Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid composition . Proc. Natl. Acad. Sci. USA 1980 , 77 , 1632 – 1636 .
  • Krokhin , O.V. Sequence-specific retention calculator . Algorithm for peptide retention prediction in ion-pair RP-HPLC: Application to 300- and 100-angstrom pore size C18 sorbents. Anal. Chem. 2006 , 78 , 7785 – 7795 .
  • Mant , C.T. ; Burke , T.W.L. ; Black , J.A. ; Hodges , R.S. Effect of peptide chain length on peptide retention behavior in reversed-phase chromatography . J. Chromatogr. 1988 , 458 , 193 – 205 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.