Deciphering the traits associated with PAH degradation by a novel Serratia marcesencs L-11 strain

References

• Keith , L. H. and Telliard , W. A. 1979 . Priority pollutants I—A perspective view . Environ. Sci. Technol. , 13 : 416 – 423 .
   Web of Science ®Google Scholar
• Chang , K. F. , Fang , G. C. , Chin , J. C. and Wu , Y. S. 2006 . Polycyclic aromatic hydrocarbon in Asia: A review from 1999–2004 . Environ. Pollut. , 142 : 388 – 396 .
   PubMed Web of Science ®Google Scholar
• Morehead , N. R. , Eadie , B. J. , Lake , B. , Landrum , P. D. and Berner , D. 1986 . The sorption of PAH onto dissolved organic matter in Lake Michigan waters . Chemosphere , 15 : 403 – 412 .
   Web of Science ®Google Scholar
• Miller , E. C. and Miller , J. A. 1981 . Searches for ultimate chemical carcinogens and their reactions with cellular macromolecules . Cancer , 47 : 2327 – 2345 .
   PubMed Web of Science ®Google Scholar
• Masih , A. and Taneja , A. 2006 . Polycyclic aromatic hydrocarbon (PAHs) concentration and related carcinogenic potential in soil at a semi arid region of India . Chemosphere , 65 : 449 – 456 .
   PubMed Web of Science ®Google Scholar
• Shin , S. K. , Oh , Y. S. and Kim , S. J. 1999 . Biodegradation of phenanthrene by Sphingomonas sp. Strain KH3–2 . J. Microbiol. , 37 : 185 – 192 .
   Web of Science ®Google Scholar
• Juhasz , A. L. and Naidu , R. 2000 . Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo[a]pyrene . Int. Biodeterior. Biodegrad , 45 : 57 – 58 .
   Web of Science ®Google Scholar
• Kastner , M. , Breuer-Jammali , M. and Mahro , B. 1994 . Enumeration and characterization of the soil microflora from hydrocarbon-contaminated soil sites able to mineralize polycyclic hydrocarbons (PAH) . Appl. Microbiol. Biotechnol , 41 : 267 – 273 .
   Web of Science ®Google Scholar
• Mueller , J. G. , Devereux , R. , Santavy , D. L. , Lantz , S. E. , Willis , S. G. and Pritchard , P. H. 1997 . Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils . Anton. Leeuwen , 71 : 329 – 343 .
   PubMed Web of Science ®Google Scholar
• Bastiaens , L. , Springael , D. , Wattiau , P. , Harms , H. , de Wachter , R. , Verachtert , H. and Diels , L. 2000 . Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH sorbing carriers . Appl. Environ. Microb. , 66 : 1834 – 1843 .
   PubMed Web of Science ®Google Scholar
• Khan , A. A. , Kim , S.J , Paine , D. D. and Cerniglia , C. E. 2002 . Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov . Int. J. Syst. Evol. Microbiol , 52 : 1997 – 2002 .
   PubMed Web of Science ®Google Scholar
• Derz , K. , Klinner , U. , Schupan , I. , Stackebrandt , E. and Kroppenstedt , R. M. 2004 . Mycobacterium pyrenivorans sp nov a novel polycyclic aromatic hydrocarbon degrading sp. International Int . J. Syst. Evol. Microbiol. , 54 : 2313 – 2317 .
   PubMed Web of Science ®Google Scholar
• Rockne , K. J. , Chee-Sanford , J. C. , Sandford , R. A. , Hedlund , B. P. and Staley , J. T. 2000 . Anaerobic naphthalene degradation by microbial pure cultures under nitrate reducing conditions . Appl. Environ. Microbiol , 66 : 1595 – 1601 .
   PubMed Web of Science ®Google Scholar
• Daane , L. L. , Harjono , I. , Barns , S. M. , Launen , L. A. , Palleroni , N. J. and Häggblom , M. M. 2002 . PAH‐degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. Nov., a naphthalene degrading bacterium from the rhizosphere of salt marsh plants . Int. J. Syst. Evol. Microbiol , 52 : 131 – 139 .
   PubMed Web of Science ®Google Scholar
• Rajasekar , A. , Babu , T. G. , Pandian , S. T.K. , Maruthamuthu , S. , Palaniswamy , N. and Rajendran , A. 2007 . Role of Serratia marcescens ACE2 on diesel degradation and influence on corrosion . J. Ind. Microbiol. Biotechnol. , 34 : 589 – 598 .
   PubMed Web of Science ®Google Scholar
• Johnsen , A. R. , Wick , L. Y. and Harms , H. 2005 . Principles of microbial PAH-degradation in soil . Environ. Pollut , 133 : 71 – 84 .
   PubMed Web of Science ®Google Scholar
• Deziel , E. , Paquette , G. , Villemur , R. , Lepine , F. and Bisaillon , J. 1996 . Biosurfactant production by soil Pseudomonas strain growing on polycyclic aromatic hydrocarbons . Appl. Environ. Microbiol , 62 : 1908 – 1912 .
   PubMed Web of Science ®Google Scholar
• Jimenez , I. Y. and Bartha , R. 1996 . Solvent augmented mineralization of pyrene by a Mycobacterium sp . Appl. Environ. Microbiol , 62 : 2314 – 2316 .
   Web of Science ®Google Scholar
• Sierra , G. 1957 . A simple method for the detection of lipolytic activity of microorganisms and some observations on the influence of the contact between cells and fatty substrates . Anton. Leeuwen , 23 : 15 – 22 .
   PubMedGoogle Scholar
• Jain , P. , Jain , S. and Gupta , M. N. 2005 . A microwave assisted microassay for lipases . Anal. Bioanal. Chem , 381 : 1480 – 1482 .
   PubMed Web of Science ®Google Scholar
• Garrity , G. M. , Brenner , D. J. , Kreig , N. R. and Staley , J. R. , eds. 2005 . Bergey's manual of systematic bacteriology, Volume two: The proteobacteria. , New York : Springer-Verlag .
   Google Scholar
• Charles , T. C. and Nester , E. W. 1993 . A chromosomally encoded two-component sensory transduction system is required for virulence of Agrobacterium tumefaciens . J. Bacteriol , 175 : 6614 – 6625 .
   PubMed Web of Science ®Google Scholar
• Edwards , U. , Rogall , T. , Blocker , H. , Emde , M. and Bottger , E. C. 1989 . Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA . Nucl. Acids Res. , 17 : 7843 – 7853 .
   PubMed Web of Science ®Google Scholar
• Altschul , S. F. , Gish , W. , Miller , W. , Myers , E. W. and Lipman , D. J. 1990 . Basic local alignment search tool . J. Mol. Biol. , 215 : 403 – 410 .
   PubMed Web of Science ®Google Scholar
• Rosenberg , M. , Gutnick , D. and Rosenberg , E. 1980 . Adherence of bacteria to hydrocarbons: a simple method for measuring cell-surface hydrophobicity . FEMS Microbiol. Lett. , 9 : 29 – 33 .
   Web of Science ®Google Scholar
• Mukherjee , S. , Das , P. and Sen , R. 2009 . Rapid quantification of a microbial surfactant by a simple turbidometric method . J. Microb. Meth. , 76 : 38 – 42 .
   PubMed Web of Science ®Google Scholar
• Jenkins , R. O. and Dalton , H. 1985 . The use of indole as a spectrophotometric assay substrate for toluene dioxygenase . FEMS Microbiol. Lett. , 30 : 227 – 231 .
   Web of Science ®Google Scholar
• Holding , A. J. and Collee , J. G. 1997 . Routine biochemical tests . Meth. Microbiol , 16 : 1 – 32 .
   Google Scholar
• Bushnell , L. D. and Haas , H. F. 1941 . The utilization of certain hydrocarbons by microorganisms . J. Bacteriol , 41 : 653 – 673 .
   PubMed Web of Science ®Google Scholar
• Schnurer , J. and Roswall , T. 1982 . Fluorescein diacetate hydrolysis as a measure of total microbial activity of soil and litter . Appl. Environ. Microbiol , 43 : 1256 – 1261 .
   PubMed Web of Science ®Google Scholar
• Lowry , O. H. , Rosebrough , N. H. , Farr , A. L. and Rondall , R. J. 1951 . Protein measurement with folin phenol reagent . J. Biol. Chem. , 193 : 265 – 275 .
   PubMed Web of Science ®Google Scholar
• Khalid , A. , Tianling , Z. , Huasheng , H. , Zhiming , Y. , Jianjun , Y. and Zhong , H. 2004 . Preliminary study on PAH degradation by bacteria from contaminated sediments in Xiamen Western Sea, Fujian, China . Chinese J. Oceanol. Limnol. , 22 : 431 – 435 .
   Google Scholar
• Kastner , M. , Breuer-Jammali , M. and Mahro , B. 1994 . Enumeration and characterization of the soil microflora from hydrocarbon-contaminated soil sites able to mineralize polycyclic hydrocarbons (PAH) . Appl. Microbiol. Biotechnol , 41 : 267 – 273 .
   Web of Science ®Google Scholar
• Johnsen , A. R. , Winding , A. , Karlson , U. and Roslev , P. 2002 . Linking of micro-organisms to phenanthrene metabolism in soil by analysis of 13C-labelled cell-lipids . Appl. Environ. Microbiol , 68 : 6106 – 6113 .
   PubMed Web of Science ®Google Scholar
• Daane , L. L. , Harjono , I. , Barns , S. M. , Launen , L. A. , Palleroni , N. J. and Häggblom , M. M. 2002 . PAH‐degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. Nov., a naphthalene degrading bacterium from the rhizosphere of salt marsh plants . Int. J. Syst. Evol. Microbiol , 52 : 131 – 139 .
   PubMed Web of Science ®Google Scholar
• Bredholt , H. , Bruheim , P. , Potocky , M. and Eimhjellen , K. 2002 . Hydrophobicity development, alkane oxidation, and crude-oil emulsification in a Rhodococcus species . Can. J. Microbiol , 48 : 295 – 304 .
   PubMed Web of Science ®Google Scholar
• Wick , L. Y. , Wattiau , P. and Harms , H. 2002 . Responses of Mycobacterium sp.LB501T to the low bioavailability of solid anthracene . Appl. Microbiol. Biotechnol , 58 : 378 – 385 .
   PubMed Web of Science ®Google Scholar
• Prabhu , Y. and Phale , P. S. 2003 . Biodegradation of phenanthrene by Pseudomonas sp. strain PP2: novel metabolic pathway, role of biosurfactant and cell surface hydrophobicity in hydrocarbon assimilation . Appl. Microbiol. Biotechnol , 61 : 342 – 351 .
   PubMed Web of Science ®Google Scholar
• Leneva , N. A. , Kolomytseva , M. P. , Baskunov , B. P. and Golovleva , L. A. 2009 . Phenanthrene and anthracene degradation by microorganism of the genus Rhodococcus . Appl. Biochem. Microbiol , 45 : 169 – 175 .
   Web of Science ®Google Scholar
• Uyttebroek , M. , Vermeir , S. , Wattiau , P. , Ryngaert , A. and Springael , D. 2007 . Characterization of cultures enriched from acidic polycyclic aromatic hydrocarbon-contaminated soil for growth on pyrene at low pH . Appl. Environ. Microbiol , 73 : 3159 – 3164 .
   PubMed Web of Science ®Google Scholar
• Nwanna , I. E.M. , George , G. O. and Olusoji , I. M. 2006 . Growth study on chrysene degraders isolated from polycyclic aromatic hydrocarbon polluted soils in Nigeria . Afr J Biotechnol , 5 : 823 – 828 .
   Web of Science ®Google Scholar
• Jacques , R. J.S , Santos , E. C. and Bento , F. M. 2005 . Anthracene biodegradation by Pseudomonas sp. isolated from a petrochemical sludge landfarming site . Int. Biodeter. Biodegr , 56 : 143 – 150 .
   Web of Science ®Google Scholar
• Green , V. S. , Statt , D. E. and Diack , M. 2006 . Assay for fluorescein diacetate hydrolytic activity: optimization for soil samples . Soil Biol. Biochem , 38 : 693 – 701 .
   Web of Science ®Google Scholar
• Kumar , S. , Upadhayay , S. K. , Kumari , B. , Tiwari , S. , Singh , S. N. and Singh , P. K. 2011 . In vitro degradation of fluoranthene by bacteria isolated from petroleum sludge . Bioresour. Technol , 102 : 3709 – 3715 .
   PubMed Web of Science ®Google Scholar
• Zhang , H. , Kallimanis , A. , Koukkou , A. I. and Drainas , C. 2004 . Isolation and characterization of novel bacteria degrading polycyclic aromatic hydrocarbons from polluted Greek soils . Appl. Microbiol. Biotechnol , 65 : 124 – 131 .
   PubMed Web of Science ®Google Scholar
• Prasanna , R. , Pattnaik , S. , Sugitha , T. C.K. , Nain , L. and Saxena , A. K. 2011 . Development of cyanobacterium-based bioflims and their in vitro evaluation for agriculturally useful traits . Folia Microbiol , DOI 10.1007/s12223–011–0013–5
   Web of Science ®Google Scholar