Novel hydrolytic extremely halotolerant alkaliphiles from mature landfill leachate with key involvement in maturation process

References

• Lema, J.M.; Mendez, R.; Blazquez, R. Characteristics of landfill leachates and alternatives for their treatment: A review. Water Air Soil Pollut. 1988, 40, 223–250.
   Web of Science ®Google Scholar
• Fernandes, A.; Pacheco, M.J.; Ciríaco, L.; Lopes, A. Review on the electrochemical processes for the treatment of sanitary landfill leachates: Present and future. Appl. Catal. B 2015, 176–177, 183–200.
   Web of Science ®Google Scholar
• Schiopu, A.-M.; Gavrilescu, M. Options for the treatment and management of municipal landfill leachate: Common and specific issues. Clean—Soil Air Water 2010, 38, 1101–1110.
   Web of Science ®Google Scholar
• Christensen, T.H.; Kjeldsen, P.; Bjerg, P.L.; Jensen, D.L.; Christensen, J.B.; Baun, A.; Albrechtsen, H.-J.; Heron, G. Biogeochemistry of landfill leachate plumes. Appl. Geochem. 2001, 16, 659–718.
   Web of Science ®Google Scholar
• Lopez, A.; Pagano, M.; Volpe, A.; Di Pinto, A.C. Fenton's pre-treatment of mature landfill leachate. Chemosphere 2004, 54, 1005–1010.
   PubMed Web of Science ®Google Scholar
• Renou, S.; Givaudan, J.G.; Poulain, S.; Dirassouyan, F.; Moulin, P. Landfill leachate treatment: Review and opportunity. J. Hazard. Mater. 2008, 150, 468–493.
   PubMed Web of Science ®Google Scholar
• Rothschild, L.J.; Mancinelli, R.L. Life in extreme environments. Nature 2001, 409, 1092–1101.
   PubMed Web of Science ®Google Scholar
• Horikoshi, K. Alkaliphiles: Some applications of their products for biotechnology. Microbiol. Mol. Biol. Rev. 1999, 63, 735–750.
   PubMed Web of Science ®Google Scholar
• Ntougias, S.; Russell, N.J. Alkalibacterium olivoapovliticus gen. nov., sp. nov., a new obligately alkaliphilic bacterium isolated from edible-olive wash-waters. Int. J. Syst. Evol. Microbiol. 2001, 51, 1161–1170.
   PubMed Web of Science ®Google Scholar
• Oren, A. Diversity of halophilic microorganisms: Environments, phylogeny, physiology, and applications. J. Ind. Microbiol. Biotechnol. 2002, 28, 56–63.
   PubMed Web of Science ®Google Scholar
• Ventosa, A.; Nieto, J.J.; Oren, A. Biology of moderately halophilic aerobic bacteria. Microbiol. Mol. Biol. Rev. 1998, 62, 504–544.
   PubMed Web of Science ®Google Scholar
• Margesin, R.; Schinner, F. Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 2001, 5, 73–83.
   PubMed Web of Science ®Google Scholar
• Kushner, D.J. Growth and nutrition of halophilic bacteria. In The Biology of Halophilic Bacteria; Vreeland, R.H., Hochstein, L.I., Eds.; CRC Press: Boca Raton, FL, 1993; 87–103.
   Google Scholar
• Grant, W.D.; Mwatha, W.E.; Jones, B.E. Alkaliphiles: Ecology, diversity and applications. FEMS Microbiol. Rev. 1990, 75, 255–269.
   Web of Science ®Google Scholar
• Roadcap, G.S.; Sanford, R.A.; Jin, Q.; Pardinas, J.R.; Bethke, C.M. Extremely alkaline (pH >12) ground water hosts diverse microbial community. Ground Water 2006, 44, 511–517.
   PubMed Web of Science ®Google Scholar
• Cayol, J.-L.; Ollivier, B.; Alazard, D.; Amils, R.; Godfroy, A.; Piette, F.; Prieur, D. The extreme conditions of life on the planet and exobiology. In Environmental Microbiology: Fundamentals and Applications; Bertrand, J.-C., Caumette, P., Lebaron, P., Matheron, R., Normand, P., Sime-Ngando, T., Eds.; Springer: Dordrecht, 2015; 353–394.
   Google Scholar
• Zhao, B.; Yan, Y.; Chen, S. How could haloalkaliphilic microorganisms contribute to biotechnology? Can. J. Microbiol. 2014, 60, 717–727.
   PubMed Web of Science ®Google Scholar
• Clesceri, L.S.; Greenberg, A.E.; Eaton, A.D. Standard Methods for the Examination of Water and Wastewater; American Public Health Association (APHA): Washington, DC, 1998.
   Google Scholar
• Huang, X.; Madan, A. CAP3: A DNA sequence assembly program. Genome Res. 1999, 9, 868–877.
   PubMed Web of Science ®Google Scholar
• Sievers, F.; Wilm, A.; Dineen, D.; Gibson, T.J.; Karplus, K.; Li, W.; Lopez, R.; McWilliam, H.; Remmert, M.; Söding, J.; Thompson, J.D.; Higgins, D.G. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 2011, 7, art. no. 539.
   PubMed Web of Science ®Google Scholar
• Tamura, K.; Stecher, G.; Peterson, D.; Filipski, A.; Kumar, S. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 2013, 30, 2725–2729.
   PubMed Web of Science ®Google Scholar
• Jukes, T.H.; Cantor, C.R. Evolution of protein molecules. In Mammalian Protein Metabolism; Munro, H.N., Ed.; Academic Press: New York, 1969; 21–132.
   Google Scholar
• Saitou, N., Nei, M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4, 406–425.
   PubMed Web of Science ®Google Scholar
• Bradford, M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72, 248–254.
   PubMed Web of Science ®Google Scholar
• Gessesse, A.; Dueholm, T.; Petersen, S.B.; Nielsen, P.H. Lipase and protease extraction from activated sludge. Water Res. 2003, 37, 3652–3657.
   PubMed Web of Science ®Google Scholar
• Benitez, E.; Sainz, H.; Nogales, R. Hydrolytic enzyme activities of extracted humic substances during the vermicomposting of a lignocellulosic olive waste. Bioresour. Technol. 2005, 96, 785–790.
   PubMed Web of Science ®Google Scholar
• Yoon, J.-H.; Lee, K.-C.; Kho, Y.H.; Kang, K.H.; Kim, C.-J.; Park, Y.-H. Halomonas alimentaria sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int. J. Syst. Evol. Microbiol. 2002, 52, 123–130.
   PubMed Web of Science ®Google Scholar
• Romano, I.; Giordano, A.; Lama, L.; Nicolaus, B.; Gambacorta, A. Halomonas campaniensis sp. nov., a haloalkaliphilic bacterium isolated from a mineral pool of Campania Region, Italy. Syst. Appl. Microbiol. 2005, 28, 610–618.
   PubMed Web of Science ®Google Scholar
• Pan, J.; Abulaizi, A.; Sun, C.; Cheng, H.; Wu, M. Draft genomic DNA sequence of strain Halomonas sp. FS-N4 exhibiting high catalase activity. Mar. Genomics 2014, 18, 119–121.
   PubMed Web of Science ®Google Scholar
• Romano, I.; Lama, L.; Nicolaus, B.; Poli, A.; Gambacorta, A.; Giordano, A. Halomonas alkaliphila sp. nov., a novel halotolerant alkaliphilic bacterium isolated from a salt pool in Campania (Italy). J. Gen. Appl. Microbiol. 2006, 52, 339–348.
   PubMed Web of Science ®Google Scholar
• Gauthier, M.J.; Lafay, B.; Christen, R.; Fernandez, L.; Acquaviva, M.; Bonin, P.; Bertrand, J.-C. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int. J. Syst. Bacteriol. 1992, 42, 568–576.
   PubMedGoogle Scholar
• Gorshkova, N.M.; Ivanova, E.P.; Sergeev, A.F.; Zhukova, N.V.; Alexeeva, Y.; Wright, J.P.; Nicolau, D.V.; Mikhailov, V.V.; Christen, R. Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan. Int. J. Syst. Evol. Microbiol. 2003, 53, 2073–2078.
   PubMed Web of Science ®Google Scholar
• Abraham, W.-R.; Lünsdorf, H.; Vancanney, M.; Smit, J. Cauliform bacteria lacking phospholipids from an abyssal hydrothermal vent: Proposal of Glycocaulisabyssi gen. nov., sp. nov., belonging to the family Hyphomonadaceae. Int. J. Syst. Evol. Microbiol. 2013, 63, 2207–2215.
   PubMed Web of Science ®Google Scholar
• van Niel, C.B. The culture, general physiology, morphology and classification of the non-sulfur purple and brown bacteria. Bacteriol. Rev. 1944, 8, 1–118.
   PubMedGoogle Scholar
• Hube, A.E.; Heyduck-Söller, B.; Fischer, U. Phylogenetic classification of heterotrophic bacteria associated with filamentous marine cyanobacteria in culture. Syst. Appl. Microbiol. 2009, 32, 256–265.
   PubMed Web of Science ®Google Scholar
• Yu, Y.; Yan, S.-L.; Li, H.-R.; Zhang, X.-H. Roseicitreum antarcticum gen. nov., sp. nov., an aerobic bacteriochlorophyll a-containing alphaproteobacterium isolated from antarctic sandy intertidal sediment. Int. J. Syst. Evol. Microbiol. 2011, 61, 2173–2179.
   PubMed Web of Science ®Google Scholar
• Milford, A.D.; Achenbach, L.A.; Jung, D.O.; Madigan, M.T. Rhodobaca bogoriensis gen. nov. and sp. nov., an alkaliphilic purple nonsulfur bacterium from African Rift Valley soda lakes. Arch. Microbiol. 2000, 174, 18–27.
   PubMed Web of Science ®Google Scholar
• Masui, N.; Morono, Y.; Inagaki, F. Microbiological assessment of circulation mud fluids during the first operation of riser drilling by the deep-earth research vessel chikyu. Geomicrobiol. J. 2008, 25, 274–282.
   Web of Science ®Google Scholar
• Amoozegar, M.A.; Sánchez-Porro, C.; Rohban, R.; Hajighasemi, M.; Ventosa, A. Piscibacillus halophilus sp. nov., a moderately halophilic bacterium from a hypersaline Iranian lake. Int. J. Syst. Evol. Microbiol. 2009, 59, 3095–3099.
   PubMed Web of Science ®Google Scholar
• Jie, H.; Daping, L. Nitrite removal performance and community structure of nitrite-oxidizing and heterotrophic bacteria suffered with organic matter. Curr. Microbiol. 2008, 57, 287–293.
   PubMed Web of Science ®Google Scholar
• Larsen, H. Halophilism. In The Bacteria; Gunsalus, I.C., Stanier, R.Y., Eds.; Academic Press: New York, 1962; vol. 4, 297–342.
   Google Scholar
• Ntougias, S. Phylogenetic identification and enzyme activities of indigenous bacteria from a landfill stabilization pond. Environ. Process. 2016, 3, 341–352.
   Google Scholar
• He, Y.; Li, Z.; Yao, L.; Zhao, Y.C.; Huang, M.S.; Zhou, G.M. Molecular phylogenetic analysis of dominant microbial populations in aged refuse. World J. Microbiol. Biotechnol. 2014, 30, 1037–1045.
   PubMed Web of Science ®Google Scholar
• Pichler, M.; Kögel-Knabner, I. Chemolytic analysis of organic matter during aerobic and anaerobic treatment of municipal solid waste. J. Environ. Qual. 2000, 29, 1337–1344.
   Web of Science ®Google Scholar
• Chua, P.; Yoo, H.S.; Gan, H.M.; Lee, S.M. Draft genome sequences of two cellulolytic Paenibacillus sp. strains, MAEPY1 and MAEPY2, from Malaysian landfill leachate. Genome Announc. 2014, 2, e00065–14.
   Google Scholar
• Jiangying, L.; Dimin, X.; Youcai, Z.; Shaowei, C.; Guojian, L.; Qi, Z. Long-term monitoring and prediction for settlement and composition of refuse in Shanghai Laogang Municipal Landfill. Environ. Manage. 2004, 34, 441–448.
   PubMed Web of Science ®Google Scholar
• Pichler, M.; Knicker, H.; Kogel-Knabner, I. Changes in the chemical structure of municipal solid waste during composting as studied by solid-state dipolar dephasing and PSRE 13C NMR and solid-state 15N NMR spectroscopy. Environ. Sci. Technol. 2000, 34, 4034–4038.
   Web of Science ®Google Scholar
• Skariyachan, S.; Megha, M.; Kini, M.N.; Mukund, K.M.; Rizvi, A.; Vasist, K. Selection and screening of microbial consortia for efficient and ecofriendly degradation of plastic garbage collected from urban and rural areas of Bangalore, India. Environ. Monit. Assess. 2015, 187, art. 4174.
   Google Scholar
• Anil Kumar, P.; Srinivas, T.N.R.; Madhu, S.; Sravan, R.; Singh, S.; Naqvi, S.W.A.; Shivaji, S. Cecembia lonarensis gen. nov., sp. nov., a haloalkalitolerant bacterium of the family Cyclobacteriaceae, isolated from a haloalkaline lake and emended descriptions of the genera Indibacter, Nitritalea and Belliella. Int. J. Syst. Evol. Microbiol. 2012, 62, 2252–2258.
   PubMed Web of Science ®Google Scholar
• Munjam, S.; Girisham, S.; Reddy, S.M. Production of lipases by four anoxygenic purple non-sulphur phototrophic bacteria. Hindustan Antibiot. Bull. 2005, 47–48, 32–35.
   PubMedGoogle Scholar
• Yue, H.; Ling, C.; Yang, T.; Chen, X.; Chen, Y.; Deng, H.; Wu, Q.; Chen, J.; Chen, G.-Q. A seawater-based open and continuous process for polyhydroxyalkanoates production by recombinant Halomonas campaniensis LS21 grown in mixed substrates. Biotechnol. Biofuels 2014, 7, art. no. 108.
   Google Scholar
• Ohnishi, A.; Nagano, A.; Fujimoto, N.; Suzuki, M. Phylogenetic and physiological characterization of mesophilic and thermophilic bacteria from a sewage sludge composting process in Sapporo, Japan. World J. Microbiol. Biotechnol. 2011, 27, 333–340.
   Web of Science ®Google Scholar
• Moreno, M.L.; Pérez, D.; García, M.T.; Mellado, E. Halophilic bacteria as a source of novel hydrolytic enzymes. Life 2013, 3, 38–51.
   PubMedGoogle Scholar
• Rohban, R.; Amoozegar, M.A.; Ventosa, A. Screening and isolation of halophilic bacteria producing extracellular hydrolyses from Howz Soltan Lake, Iran. J. Ind. Microbiol. Biotechnol. 2009, 36, 333–340.
   PubMed Web of Science ®Google Scholar
• Schreck, S.D.; Grunden, A.M. Biotechnological applications of halophilic lipases and thioesterases. Appl. Microbiol. Biotechnol. 2014, 98, 1011–1021.
   PubMed Web of Science ®Google Scholar
• Sarethy, I.P.; Saxena, Y.; Kapoor, A.; Sharma, M.; Sharma, S.K.; Gupta, V.; Gupta, S. Alkaliphilic bacteria: Applications in industrial biotechnology. J. Ind. Microbiol. Biotechnol. 2011, 38, 769–790.
   PubMed Web of Science ®Google Scholar
• Li, X.; Qian, P.; Wu, S.-G.; Yu, H.-Y. Characterization of an organic solvent-tolerant lipase from Idiomarina sp. W33 and its application for biodiesel production using Jatropha oil. Extremophiles 2014, 18, 171–178.
   PubMed Web of Science ®Google Scholar
• Stackebrandt, E.; Goebel, B.M. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 1994, 44, 846–849.
   Web of Science ®Google Scholar
• Ueda, S.; Fujiwara, N.; Naka, T.; Sakaguchi, I.; Ozeki, Y.; Yano, I.; Kasama, T.; Kobayashi, K. Structure-activity relationship of mycoloyl glycolipids derived from Rhodococcus sp. 4306. Microb. Pathog. 2001, 30, 91–99.
   PubMed Web of Science ®Google Scholar