References
- Brenner, D.J.; Balows, A.; Truper, H.G.; Dworkin, M.; Harder, W.; Schleifer, K.H. Introduction to the Family Enterobacteriaceae; Springer-Verlag: New York, N.Y., 1992; Vol. 3, 2673–2695.
- Fox, G.E.; Stackebrandt, E.; Hespell, R.B.; Gibson, J.; Maniloff, J.; Dyer, T.A.; Wolfe, R.S.; Balch, W.E.; Tanner, R.S.; Magrum, L.J., et al. The phylogeny of prokaryotes. Science. 1980, 209(4455), 457–463.
- Manafi, M.; W Kneifel, W.; Bascomb, S. Fluorogenic and chromogenic substrates used in bacterial diagnostics. Microbiol. Mol. Biol. Rev. 1991, 55(3), 335–348.
- Vergis, J.; Negi, M.; Poharkar, K.; Das, D.P.; Malik, S.V.S.; Kumar, A.; Doijad, S.P.; Barbuddhe, S.B.; Rawool, D.B. 16S rRNA PCR followed by restriction endonuclease digestion: A rapid approach for genus level identification of important enteric bacterial pathogens. J. Microbiol. Methods. 2013, 95, 353–356.
- Kuncham, R.; Sivaprakasam, T.; Puneeth Kumar, R.P.; Sreenath, P.; Nayak, R. Bacterial fauna associating with chironomid larvae from lakes of Bengaluru city, India – A 16s rRNA gene based identification. Genom. Data. 2017, 12, 44–48.
- Sauer, S.; Kliem, M. Mass spectrometry tools for the classification and identification of bacteria. Nature Rev. Microbiol. 2010, 8(1), 74–82.
- Teramoto, K.; Sato, H. Progress in rapid identification and classification of bacteria by mass spectrometry. J. Mass Spectrom. Soc. Jpn. 2008, 56, 83–90.
- Liu, H.; Du, Z.; Wang, J.; Yang, R. Universal sample preparation method for characterization of bacteria by matrix-assisted laser desorption ionization-Time of flight mass spectrometry. Appl. Environ. Microbiol. 2007, 73(6), 1899–1907.
- Clark, C.G.; Kruczkiewicz, P.; Guan, C.; McCorrister, S.J.; Chong, P.; Wylie, J.; van Caeseele, P.; Tabor, H.A.; Snarr, P.; Gilmour, M.W., et al. Evaluation of MALDITOF mass spectroscopy methods for determination of Escherichia coli pathotypes. J. Microbiol. Methods. 2013, 94(3), 180–191.
- Freiwald, A.; Sauer, S. Phylogenetic classification and identification of bacteria by mass spectrometry. Nat. Protoc. 2009, 4(5), 732–742.
- Giebel, R.; Worden, C.; Rust, S. M.; Kleinheinz, G.T.; Robbins, M.; Sandri, N.T.R. Microbial fingerprinting using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) applications and challenges. Adv. Appl. Microbiol. 2010, 71, 149–184.
- Pineda, F.J.; Antoine, M.D.; Demirev, P.A.; Feldman, A.B.; Jackman, J.; Longenecker, M.; Lin, J.S. Microorganism identification by matrix assisted laser/desorption ionization mass spectrometry and model-derived ribosomal protein biomarkers. Anal. Chem. 2003, 75(15), 3817–3822.
- Topic, P.N.; Kazazic, S.P.; Strunjak-Perovic, I.; Barisic, J.; Sauerborn, K.R.; Kepec, S.; Coz-Rakovac, R. Detection and diversity of aeromonads from treated wastewater and fish inhabiting effluent and downstream waters. Ecotoxicol. Environ. Saf. 2015, 120, 235–242.
- Rebecca, A.G.; Weston, F.; Todd, R.S. Characterization of environmental isolates of Enterococcus spp. by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Water Res. 2008, 42(4–5), 931–940.
- Lane, D.J. 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics; Stackebrandt, E., Goodfellow, M., Eds.; Wiley: Chichester, UK, 1991; 115–175.
- Omagari, T.; Takakura, S.; Muramatsu, K.; Sugiyama, T.; Takeshita, N.; Takahashi, M.; Ainota, Y.; Goto, A.; Chibana, N.; Oshiro, K., et al. A questionnaire survey of blood culture among Japanese hospitals: A pilot study. Jap. Soc. Clin. Microbal. 2012, 22(1), 13–19.
- Sauer, S.; Freiwald, A.; Maier, T.; Kube, M.; Reinhardt, R.; Kostrzewa, M.; Geider, K. Classification and identification of bacteria by mass spectrometry and computational analysis. PLoS ONE. 2008, 3(7), e2843.
- Alispahic, M.; Christensen, H.; Bisgaard, M.; Hess, M.; Hess, C. MALDI-TOF mass spectrometry confirms difficulties in separating species of the Avibacterium genus. Avian Pathol. 2014, 43(3), 258–263.