Association of virulence factors, phylogenetic groups and antimicrobial resistance markers in Escherichia coli from Badin city, Pakistan

References

• Foxman B. Epidemiology of urinary tract infections: incidence, morbidity, and economic costs. Am J Med. 2002 July;113(Suppl 1A):5S–13S.10.1016/S0002-9343(02)01054-9
   PubMed Web of Science ®Google Scholar
• Kaper JB, Nataro JP, Mobley HL. Pathogenic Escherichia coli. Nat Rev Microbiol. 2004 Feb;2(2):123–40.10.1038/nrmicro818
   PubMed Web of Science ®Google Scholar
• Hooton TM, Scholes D, Hughes JP, Winter C, Roberts PL, Stapleton AE, et al. A prospective study of risk factors for symptomatic urinary tract infection in young women. N Engl J Med. 1996 Aug;335(7):468–74.10.1056/NEJM199608153350703
   PubMed Web of Science ®Google Scholar
• Marrs CF, Zhang L, Foxman B. Escherichia coli mediated urinary tract infections: are there distinct uropathogenic E. coli (UPEC) pathotypes? FEMS Microbiol Lett. 2005 Nov;252(2):183–90.10.1016/j.femsle.2005.08.028
   PubMed Web of Science ®Google Scholar
• Foxman B, Klemstine KL, Brown PD. Acute pyelonephritis in US hospitals in 1997: hospitalization and in-hospital mortality. Ann Epidemiol. 2003 Feb;13(2):144–50.10.1016/S1047-2797(02)00272-7
   PubMed Web of Science ®Google Scholar
• Clermont O, Christenson JK, Denamur E, Gordon DM. The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ Microbiol Rep. 2013 Feb;5(1):58–65.10.1111/emi4.2013.5.issue-1
   PubMed Web of Science ®Google Scholar
• Herzer PJ, Inouye S, Inouye M, Whittam TS. Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. J Bacteriol. 1990 Nov;172(11):6175–81.
   PubMed Web of Science ®Google Scholar
• Johnson JR, Delavari P, Kuskowski M, Stell AL. Phylogenetic distribution of extraintestinal virulence‐associated traits in Escherichia coli. J Infect Dis. 2001 Jan;183(1):78–88.10.1086/jid.2001.183.issue-1
   PubMed Web of Science ®Google Scholar
• Bashir S, Haque A, Sarwar Y, Ali A, Anwar MI. Virulence profile of different phylogenetic groups of locally isolated community acquired uropathogenic E. coli from Faisalabad region of Pakistan. Ann Clin Microbiol Antimicrob. 2012;11: 23:1–6.10.1186/1476-0711-11-23
   PubMed Web of Science ®Google Scholar
• Picard B, Garcia JS, Gouriou S, Duriez P, Brahimi N, Bingen E, et al. The link between phylogeny and virulence in Escherichia coli extraintestinal infection. Infect Immun. 1999 Feb;67(2):546–53.
   PubMed Web of Science ®Google Scholar
• Russo TA, Johnson JR. Proposal for a new inclusive designation for extraintestinal pathogenic isolates of Escherichia coli: ExPEC. J Infect Dis. 2000 May;181(5):1753–4.10.1086/jid.2000.181.issue-5
   PubMed Web of Science ®Google Scholar
• Bingen-Bidois M, Clermont O, Bonacorsi S, Terki M, Brahimi N, Loukil C, et al. Phylogenetic analysis and prevalence of urosepsis strains of Escherichia coli bearing pathogenicity island-like domains. Infect Immun. 2002 Jun;70(6):3216–26.10.1128/IAI.70.6.3216-3226.2002
   PubMed Web of Science ®Google Scholar
• Boyd EF, Hartl DL. Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution. J Bacteriol. 1998 Mar;180(5):1159–65.
   PubMed Web of Science ®Google Scholar
• Johnson JR, Kuskowski MA, Gajewski A, Soto S, Horcajada JP, Jimenez de Anta MT, et al. Extended virulence genotypes and phylogenetic background of Escherichia coli Isolates from patients with cystitis, pyelonephritis, or prostatitis. J Infect Dis. 2005 Jan;191(1):46–50.10.1086/jid.2005.191.issue-1
   PubMed Web of Science ®Google Scholar
• Moreno E, Andreu A, Pigrau C, Kuskowski MA, Johnson JR, Prats G. Relationship between Escherichia coli Strains causing acute cystitis in women and the fecal E. coli population of the host. J Clin Microbiol. 2008 Aug;46(8):2529–34.10.1128/JCM.00813-08
   PubMed Web of Science ®Google Scholar
• Takahashi A, Kanamaru S, Kurazono H, Kunishima Y, Tsukamoto T, Ogawa O, et al. Escherichia coli isolates associated with uncomplicated and complicated cystitis and asymptomatic bacteriuria possess similar phylogenies, virulence genes, and o-serogroup profiles. J Clin Microbiol. 2006 Dec;44(12):4589–92.10.1128/JCM.02070-06
   PubMed Web of Science ®Google Scholar
• Dobrindt U, Blum-Oehler G, Hartsch T, Gottschalk G, Ron EZ, Funfstuck R, et al. S-Fimbria-encoding determinant sfa(I) is located on pathogenicity island III(536) of uropathogenic Escherichia coli strain 536. Infect Immun. 2001 Jul;69(7):4248–56.10.1128/IAI.69.7.4248-4256.2001
   PubMed Web of Science ®Google Scholar
• Garcia MI, Labigne A, Le Bouguenec C. Nucleotide sequence of the afimbrial-adhesin-encoding afa-3 gene cluster and its translocation via flanking IS1 insertion sequences. J Bacteriol. 1994 Dec;176(24):7601–13.
   PubMed Web of Science ®Google Scholar
• Le Bouguenec C, Garcia MI, Ouin V, Desperrier JM, Gounon P, Labigne A. Characterization of plasmid-borne afa-3 gene clusters encoding afimbrial adhesins expressed by Escherichia coli strains associated with intestinal or urinary tract infections. Infect Immun. 1993 Dec;61(12):5106–14.
   PubMed Web of Science ®Google Scholar
• Wang Y, Wen ZG, Kim KS. Role of S fimbriae in Escherichia coli K1 binding to brain microvascular endothelial cells in vitro and penetration into the central nervous system in vivo. Microb Pathog. 2004 Dec;37(6):287–93.10.1016/j.micpath.2004.09.002
   PubMed Web of Science ®Google Scholar
• Lacher DW, Steinsland H, Whittam TS. Allelic subtyping of the intimin locus (eae) of pathogenic Escherichia coli by fluorescent RFLP. FEMS Microbiol Lett. 2006 Aug;261(1):80–7.10.1111/fml.2006.261.issue-1
   PubMed Web of Science ®Google Scholar
• Hofman P, Le Negrate G, Mograbi B, Hofman V, Brest P, Alliana-Schmid A, et al. Escherichia coli cytotoxic necrotizing factor-1 (CNF-1) increases the adherence to epithelia and the oxidative burst of human polymorphonuclear leukocytes but decreases bacteria phagocytosis. J Leukoc Biol. 2000 Oct;68(4):522–8.
   PubMed Web of Science ®Google Scholar
• Cai W, Wannemuehler Y, Dell’ anna G, Nicholson B, Barbieri NL, Kariyawasam S, et al. A novel two-component signaling system facilitates uropathogenic Escherichia coli’s ability to exploit abundant host metabolites. PLoS Pathog. 2013;9(6):e1003428.10.1371/journal.ppat.1003428
   Google Scholar
• Rijavec M, Erjavec M, Avgucic J, Reissbrodt R, Fruth A, Krithbrodtvgust V, et al. High prevalence of multidrug resistance and random distribution of mobile genetic elements among uropathogenic Escherichia coli (UPEC) of the four major phylogenetic groups. Curr Microbiol. 2006 Aug;53(2):158–62.10.1007/s00284-005-0501-4
   PubMed Web of Science ®Google Scholar
• Jemima SA, Verghese S. Multiplex PCR for bla(CTX-M) & bla(SHV) in the extended spectrum beta lactamase (ESBL) producing gram-negative isolates. Indian J Med Res. 2008 Sep;128(3):313–7.
   PubMed Web of Science ®Google Scholar
• Vali P, Shahcheraghi F, Seyfipour M, Zamani MA, Allahyar MR, Feizabadi MM. Phenotypic and genetic characterization of carbapenemase and ESBLs producing gram-negative bacteria (GNB) isolated from patients with cystic fibrosis (CF) in Tehran hospitals. J Clin Diagn Res. 2014 Jan;8(1):26–30.
   PubMedGoogle Scholar
• Bashir S, Haque A, Sarwar Y, Ali A, Anwar M. Virulence profile of different phylogenetic groups of locally isolated community acquired uropathogenic E. coli from Faisalabad region of Pakistan. Ann Clin Microbiol Antimicrob. 2012;11(1):23.10.1186/1476-0711-11-23
   PubMed Web of Science ®Google Scholar
• Bingen-Bidois M, Clermont O, Bonacorsi S, Terki M, Brahimi N, Loukil C. Phylogenetic analysis and prevalence of urosepsis strains of Escherichia coli bearing pathogenicity island-like domains. Infect Immun. 2002;70:216–26.
   Web of Science ®Google Scholar
• Mulvey MA. Adhesion and entry of uropathogenic Escherichia coli. Cell Microbiol. 2002 May;4(5):257–71.10.1046/j.1462-5822.2002.00193.x
   PubMed Web of Science ®Google Scholar
• Marrs CF, Zhang L, Tallman P, Manning SD, Somsel P, Raz P, et al. Variations in 10 putative uropathogen virulence genes among urinary, faecal and peri-urethral Escherichia coli. J Med Microbiol. 2002 Feb;51(2):138–42.10.1099/0022-1317-51-2-138
   PubMed Web of Science ®Google Scholar
• Snyder JA, Haugen BJ, Buckles EL, Lockatell CV, Johnson DE, Donnenberg MS, et al. Transcriptome of uropathogenic Escherichia coli during urinary tract infection. Infect Immun. 2004 Nov;72(11):6373–81.10.1128/IAI.72.11.6373-6381.2004
   PubMed Web of Science ®Google Scholar
• Lavigne JP, Boutet-Dubois A, Laouini D, Combescure C, Bouziges N, Marzi P, et al. Virulence potential of Escherichia coli strains causing asymptomatic bacteriuria during pregnancy. J Clin Microbiol. 2011 Nov;49(11):3950–3.10.1128/JCM.00892-11
   PubMed Web of Science ®Google Scholar
• Yun KW, Kim HY, Park HK, Kim W, Lim IS. Virulence factors of uropathogenic Escherichia coli of urinary tract infections and asymptomatic bacteriuria in children. J Microbiol Immunol Inf. 2013 Sep;47(6):455–461.
   Web of Science ®Google Scholar
• Arisoy M, Aysev D, Ekim M, Ozel D, Kose SK, Ozsoy ED, et al. Detection of virulence factors of Escherichia coli from children by multiplex polymerase chain reaction. Int J Clin Pract. 2006 Feb;60(2):170–3.
   PubMed Web of Science ®Google Scholar
• Usein CR, Damian M, Tatu-Chitoiu D, Capusa C, Fagaras R, Tudorache D, et al. Prevalence of virulence genes in Escherichia coli strains isolated from Romanian adult urinary tract infection cases. J Cell Mol Med. 2001 Jul–Sep;5(3):303–10.10.1111/jcmm.2001.5.issue-3
   PubMed Web of Science ®Google Scholar
• Lopez-Banda DA, Carrillo-Casas EM, Leyva-Leyva M, Orozco-Hoyuela G, Manjarrez-Hernandez AH, Arroyo-Escalante S, et al. Identification of virulence factors genes in Escherichia coli isolates from women with urinary tract infection in Mexico. Biomed Res Int. 2014;2014: 959206:1–10.
   Web of Science ®Google Scholar
• Harada K, Niina A, Nakai Y, Kataoka Y, Takahashi T. Prevalence of antimicrobial resistance in relation to virulence genes and phylogenetic origins among urogenital Escherichia coli isolates from dogs and cats in Japan. Am J Vet Res. 2012 Mar;73(3):409–17.10.2460/ajvr.73.3.409
   PubMed Web of Science ®Google Scholar
• Habeeb MA, Sarwar Y, Ali A, Salman M, Haque A. Rapid emergence of ESBL producers in E. coli causing urinary and wound infections in Pakistan. Pak J Med Sci. 2013 Apr;29(2):540–4.
   PubMed Web of Science ®Google Scholar