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Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery

Pages 69-73 | Published online: 21 Feb 2007

References

References

  • Baldwin , TC , Handford , MG , Yuseff , MI , Orellana , A and Dupree , P . 2001 . Identification and characterization of GONST1, a Golgi-localized GDP-mannose transporter in Arabidopsis . Plant Cell , 13 : 2283 – 2295 .
  • Batagelj V Mrvar A 2004 Graph drawing software: Pajek-analysis and visualization of large networks In: Junger M, Mutzel P, editors. Mathematics and visualization. Berlin: Springer pp 77 – 103
  • Bockhorst , J , Qiu , Y , Glasner , J , Liu , M , Blattner , F and Craven , M . 2003 . Predicting bacterial transcription units using sequence and expression data . Bioinformatics , 19 : 1227 – 1235
  • Craigon , DJ , James , N , Okyere , J , Higgins , J , Jotham , J and May , S . 2004 . NASCArrays: a repository for microarray data generated by NASC's transcriptomics service . Nucl Acids Res , 32 ( Special Issue SI ) : D575 – D577 .
  • Ge , H , Liu , Z , Church , GM and Vidal , M . 2001 . Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae . Nat Genet , 29 : 482 – 486 .
  • Girke , T , Lauricha , J , Tran , H , Keegstra , K and Raikhel , N . 2004 . The cell wall navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism . Plant Physiol , 136 : 3003 – 3008 .
  • Haigler , CH , Ivanova-Datcheva , M , Hogan , PS , Salnikov , VV , Hwang , S , Martin , K and Delmer , DP . 2001 . Carbon partitioning to cellulose synthesis . Plant Mol Biol , 47 : 29 – 51 .
  • Jones , P , Messner , B , Nakajima , J , Schaffner , AR and Saito , K . 2003 . UGT73C6 and UGT78D1, glycosyltransferases involved in flavonol glycoside biosynthesis in Arabidopsis thaliana . J Biol Chem , 278 : 43910 – 43918 .
  • Nakayama , K , Maeda , Y and Jigami , Y . 2003 . Interaction of GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase with GDP-mannose-4,6-dehydratase stabilizes the enzyme activity for formation of GDP-fucose from GDP-mannose . Glycobiology 13 , 673 – : 680
  • Norambuena , L , Marchant , L , Berninsone , P , Hirschberg , CB , Silva , H and Orellana , A . 2002 . Transport of UDP-galactose in plants. Identification and functional characterization of AtUTr1, an Arabidopsis thaliana UDP-galactose/UDP-glucose transporter . J Biol Chem , 277 : 32923 – 32929 .
  • Raes , J , Rohde , A , Christensen , JH , Van de Peer , Y and Boerjan , W . 2003 . Genome-wide characterization of the lignification toolbox in Arabidopsis . Plant Physiol , 133 : 1051 – 1071 .
  • Reiter , WD , Chapple , C and Somerville , CR . 1997 . Mutants of Arabidopsis thaliana with altered cell wall polysaccharide composition . Plant J , 12 : 335 – 345 .
  • Reiter , WD and Vanzin , GF . 2001 . Molecular genetics of nucleotide sugar interconversion pathways in plants . Plant Molr Biol , 47 : 95 – 113 .
  • Scheible , WR and Pauly , M . 2004 . Glycosyltransferases and cell wall biosynthesis: novel player and insights . Curr Opin Plant Biol , 7 : 285 – 295 .
  • Seifert , GJ . 2004 . Nucleotide sugar interconversions and cell wall biosynthesis: how to bring the inside to the outside . Curr Opin Plant Biol , 7 : 277 – 284 .
  • Steinhauser D Usadel B Luedemann A Thimm O Kopka J 2004 CSB.DB: A comprehensive systems-biology database Bioinformatics Advance Access published on July 9, 2004; Doi: 10.1093/bioinformatics/bth398
  • Taylor , NG , Howells , RM , Huttly , AK , Vickers , K and Turner , SR . 2003 . Interactions among three distinct CesA proteins essential for cellulose synthesis . Proc Nat Acad Sci USA , 100 : 1450 – 1455 .
  • Thimm , O , Blasing , O , Gibon , Y , Nagel , A , Meyer , S , Kruger , P , Selbig , J , Muller , LA , Rhee , SY and Stitt , M . 2004 . MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes . Plant J , 37 : 914 – 939 .
  • Usadel , B , Schluter , U , Molhoj , M , Gipmans , M , Verma , R , Kossmann , J , Reiter , W-D and Pauly , M . 2004 . Identification and characterization of a UDP-d-glucuronate 4-epimerase in Arabidopsis . FEBS Letters , 569 : 327 – 331 .

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