67
Views
0
CrossRef citations to date
0
Altmetric
Original Articles

Hybridization network for the system of woody plant gene pools in the United States

, &
Pages 52-60 | Received 15 Jan 2011, Accepted 23 Sep 2011, Published online: 23 Jan 2012

References

  • Aban , I B , Meerschaert , M M and Panorska , A K . 2006 . Parameter estimation for the truncated Pareto distribution . J Am Stat Assoc , 101 : 270 – 277 .
  • Aldrich , P R and Cavender-Bares , J . 2011 . “ Quercus ” . In Wild crop relatives: Genetic, genomic and breeding resources - forest trees , Edited by: Kole , C . Berlin : Springer-Verlag GmbH .
  • Aldrich , P R , Parker , G R , Michler , C H and Romero-Severson , J . 2003 . Whole-tree silvic identifications and the microsatellite genetic structure of a red oak species complex in an Indiana old-growth forest . Can J Forest Res , 33 : 2228 – 2237 .
  • Barabási , A-L and Albert , R . 1999 . Emergence of scaling in random networks . Science , 286 : 509 – 512 .
  • Batagelj , V and Mrvar , A . 1998 . Pajek – Program for large network analysis . Connections , 21 : 47 – 57 .
  • Burger , W C . 1975 . The species concept in Quercus . Taxon , 24 : 45 – 50 .
  • Burns , R M , Honkala , B H and Tech. Coords . 1990 . “ Silvics of North America: 1. Conifers; 2. Hardwoods ” . In Agriculture Handbook 654 , Vol. 2 , 877 US Washington , DC : Department of Agriculture, Forest Service . Available: http://www.na.fs.fed.us/spfo/pubs/silvics_manual/table_of_contents.htm. Accessed June 2009 10
  • Burroughs , S M and Tebbens , S . 2001 . Upper-truncated power laws in natural systems . Pure Appl Geophys , 158 : 741 – 757 .
  • Chen , Z Z and Wang , L . 2010 . HybridNET: A tool for constructing hybridization networks . Bioinformatics , 26 : 2912 – 2913 .
  • Clauset , A , Shalizi , C R and Newman , M EJ . 2009 . Power-law distributions in empirical data . SIAM Rev , 51 : 661 – 703 . (arXiv:0706.1062)
  • Conte , L , Cotti , C and Cristofolini , G . 2007 . Molecular evidence for hybrid origin of Quercus crenata Lam. (Fagaceae) from Q-cerris L. and Q-suber L . Plant Biosyst , 141 : 181 – 193 .
  • Curtu , A L , Gailing , O and Finkeldey , R . 2007 . Evidence for hybridization and introgression within a species-rich oak (Quercus spp.) community . BMC Evol Biol , 7 : 218
  • Daghlian , C P and Crepet , W L . 1983 . Oak catkins, leaves and fruits from the Oligocene Catahoula formation and their evolutionary significance . Am J Bot , 70 : 639 – 649 .
  • eFloras . 2008 . Cambridge , MA : Missouri Botanical Garden, St. Louis, MO & Harvard University Herbaria . Available: http://www.efloras.org Accessed April 2011 15
  • Guimera , R and Amaral , L AN . 2004 . Modeling the world-wide airport network . Eur Phys J B , 38 : 381 – 385 .
  • Humphries , M D , Gurney , K and Prescott , T J . 2006 . The brainstem reticular formation is a small-world, not scale-free, network . P Roy Soc B Biol Sci , 273 : 503 – 511 .
  • Jovani , R , Serrano , D , Ursúa , E and Tella , J L . 2008 . Truncated power laws reveal a link between low-level behavioral processes and grouping patterns in a colonial bird . PLoS ONE , 3 : e1992 DOI:10.1371/journal.pone.0001992
  • Junker , B H and Schreiber , F . 2008 . Analysis of biological networks , 346 New York : John Wiley and Sons, Inc .
  • Kamada , T and Kawai , S . 1989 . An algorithm for drawing general undirected graphs . Inform Process Lett , 31 : 7 – 15 .
  • Lexer , C , Fay , M F , Joseph , J A , Nica , M S and Heinze , B . 2005 . Barrier to gene flow between two ecologically divergent Populus species, P. alba (white poplar) and P. tremula (European aspen): The role of ecology and life history in gene introgression . Mol Ecol , 14 : 1045 – 1057 .
  • Manos , P S , Doyle , J J and Nixon , K C . 1999 . Phylogeny, biogeography, and processes of molecular differentiation in Quercussubgenus Quercus (Fagaceae) . Mol Phylogenet Evol , 12 : 333 – 349 .
  • McBreena , K and Lockharta , P J . 2006 . Reconstructing reticulate evolutionary histories of plants . Trends Plant Sci , 11 : 398 – 404 .
  • Mossa , S , Barthélémy , M , Stanley , H E and Amaral , L AN . 2002 . Truncation of power law behavior in “scale-free” network models . Phys Rev Lett , 88: 138701
  • Muir , G and Schlötterer , C . 2005 . Evidence for shared ancestral polymorphism rather than recurrent gene flow at microsatellite loci differentiating two hybridizing oaks (Quercus spp) . Mol Ecol , 14 : 549 – 561 .
  • Posada , D and Crandall , K A . 2001 . Intraspecific gene genealogies: Trees grafting into networks . Trends Ecol Evol , 16 : 37 – 45 .
  • Soltis , P S and Soltis , D E . 2009 . The role of hybridization in plant speciation . Ann Rev Plant Biol , 60 : 561 – 588 .
  • Stace , C A . 1975 . Hybridisation and the flora of the British Isles , UK : Academic Press .
  • Travers , J and Milgram , S . 1969 . An experimental study of the small world problem . Sociometry , 32 : 425 – 443 .
  • Tuskan , G A , Difazio , S , Jansson , S Bohlmann , J . 2006 . The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) . Science , 313 : 1596 – 604 .
  • Van Valen , L . 1976 . Ecological species, multispecies, and oaks . Taxon , 25 : 233 – 239 .
  • Watts , D J and Strogatz , S H . 1998 . Collective dynamics of ‘small-world’ networks . Nature , 393 : 440 – 442 .
  • Whitney , K D , Ahern , J R and Campbell , L G . 2009 . Hybridization-prone plant families do not generate more invasive species . Biol Invas , 11 : 1205 – 1215 .
  • Whitney , K D , Aherna , J R , Campbella , L G , Alberta , L P and Kinga , M S . 2010 . Patterns of hybridization in plants . Perspect Plant Ecol Evol Syst , 12 : 175 – 182 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.