Chemical sensitivity phenome of an Armillaria mellea isolate determined using phenotype microarrays and potential use of caffeine-rich wastes for disease control

References

• Adaskaveg JE, Förster H, Wade L, Thompson DF, Connell JH. 1999. Efficacy of sodium tetrathiocarbonate and propiconazole in managing Armillaria root rot of almond on peach rootstock. Plant Dis. 83(3):240–246.
   PubMed Web of Science ®Google Scholar
• Adeniyi M, Titilawo Y, Oluduro A, Odeyemi O, Nakin M, Okoh AI. 2018. Molecular identification of some wild Nigerian mushrooms using internal transcribed spacer: polymerase chain reaction. AMB Expr. 8:148.
   PubMedGoogle Scholar
• Aguin O, Mansilla JP, Sainz MJ. 2006. In vitro selection of an effective fungicide against Armillaria mellea and control of white root rot of grapevine in the field. Pest Manag Sci. 62(3):223–228.
   PubMed Web of Science ®Google Scholar
• Babicki S, Arndt D, Marcu A, Liang Y, Grant JR, Maciejewski A, Wishart DS. 2016. Heatmapper: web-enabled heat mapping for all. Nucleic Acids Res. 44(1):147–153.
   Google Scholar
• Baumgartner K, Coetzee MP, Hoffmeister D. 2011. Secrets of the subterranean pathosystem of Armillaria. Mol Plant Pathol. 12(6):515–534.
   PubMed Web of Science ®Google Scholar
• Blumenstein K, Macaya-Sanz D, Martín JA, Albrectsen BR, Witzell J. 2015. Phenotype MicroArrays as a complementary tool to next generation sequencing for characterization of tree endophytes. Front Microbiol. 6:1033.
   PubMed Web of Science ®Google Scholar
• Bochner BR. 2009. Global phenotypic characterization of bacteria. FEMS Microbiol Rev. 33(1):191–205.
   PubMed Web of Science ®Google Scholar
• Bortolus C, Billamboz M, Charlet R, Lecointe K, Sendid B, Ghinet A, Jawhara S. 2019. A small aromatic compound has antifungal properties and potential anti-Inflammatory effects against intestinal inflammation. Int J Mol Sci. 20(3):21.
   Google Scholar
• Brilhante RSN, Gotay WJP, Pereira VS, Oliveira JS, Pereira-Neto WA, Castelo-Branco DSCM, Cordeiro RA, Sidrim JJC, Rocha MFG. 2020. Antifungal activity of promethazine and chlorpromazine against planktonic cells and biofilms of Cryptococcus neoformans/Cryptococcus gattii complex species. Med Mycol J. 58(7):906–912.
   Google Scholar
• Bromilow RH. 2004. Paraquat and sustainable agriculture. Pest Manag Sci. 60(4):340–349.
   PubMed Web of Science ®Google Scholar
• Broda M. 2020. Natural compounds for wood protection against fungi—a review. Molecules. 25:3538.
   PubMed Web of Science ®Google Scholar
• Campos-Vega R, Loarca-Piña G, Vergara-Castañeda HA, Oomah BD. 2015. Spent coffee grounds: a review on current research and future prospects. Trends Food Sci Technol. 45(1):24–36.
   Web of Science ®Google Scholar
• Chen G, Zhou Y, Cai C, Lu J, Zhang X. 2014. Synthesis and antifungal activity of benzamidine derivatives carrying 1,2,3-triazole moieties. Molecules. 19(5):5674–5691.
   PubMed Web of Science ®Google Scholar
• Chen L, Bóka B, Kedves O, Nagy VD, Szucs A, Champramary S, Roszik R, Patocskai Z, Münsterkötter M, Huynh T, et al. 2019. Towards the biological control of devastating forest pathogens from the genus Armillaria. Forest. 10(11):1013.
   Google Scholar
• Choi B, Koh E. 2017. Spent coffee as a rich source of antioxidative compounds. Food Sci Biotechnol. 26(4):921–927.
   PubMed Web of Science ®Google Scholar
• Chojniak J, Jałowiecki L, Dorgeloh E, Erta Hegedusova B, Ejhed H, Magnér J, Płaza G. 2015. Application of the BIOLOG system for characterization of Serratia marcescens ss marcescens isolated from onsite wastewater technology (OSWT). Acta Biochim Pol. 62(4):799–805.
   PubMed Web of Science ®Google Scholar
• Coetzee MP, Wingfield BD, Wingfield MJ. 2018. Armillaria root-rot pathogens: species boundaries and global distribution. Pathogens. 7(4):83.
   PubMed Web of Science ®Google Scholar
• Colantoni A, Paris E, Bianchini L, Ferri S, Marcantonio V, Carnevale M, Palma A, Civitarese V, Gallucci F. 2021. Spent cofee ground haracterization, pelletization test and emissions assessment in the combustion process. Sci Rep. 11(1):5119.
   PubMed Web of Science ®Google Scholar
• Croitoru C, Roata IC. 2020. Ionic liquids as antifungal agents for wood preservation. Molecules. 25(18):4289.
   PubMed Web of Science ®Google Scholar
• Cvjetko P, Cvjetko I, Pavlica M. 2010. Thallium toxicity in humans. Arh Hig Rada Toksikol. 61(1):111–119.
   PubMed Web of Science ®Google Scholar
• Díaz-Hernández GC, Alvarez-Fitz P, Maldonado-Astudillo YI, Jiménez-Hernández J, Parra-Rojas I, Flores-Alfaro E, Ricardo S, Ramírez M. 2022. Antibacterial, antiradical and antiproliferative potential of green, roasted, and spent coffee extracts. Appl Sci. 12(4):1938.
   Google Scholar
• Devkota P, Hammerschmidt R. 2020. The infection process of Armillaria mellea and Armillaria solidipes. Physiol Mol Plant Pathol. 112(1):101543.
   Google Scholar
• Elias-Roman RD, Calderon-Zavala G, Guzman-Mendoza R, Vallejo-Perez MR, Klopfenstein NB, Mora-Aguilera JA. 2019. Mondragon’: a clonal plum rootstock to enhance management of Armillaria root disease in peach orchards of Mexico. Crop Prot. 121:89–95.
   Web of Science ®Google Scholar
• Ford KL, Henricot B, Baumgartner K, Bailey AM, Foster GD. 2017. A faster inoculation assay for Armillaria using herbaceous plants. J Hortic Sci Biotechnol. 92(1):39–47.
   Web of Science ®Google Scholar
• Fuentefria AM, Pippi B, Lana DF, Donato KK, Andrade SF. 2018. Antifungals discovery: an insight into new strategies to combat antifungal resistance. Lett Appl Microbiol. 66(1):2–13.
   PubMed Web of Science ®Google Scholar
• Gummadi SN, Bhavya B, Ashok N. 2012. Physiology, biochemistry and possible applications of microbial caffeine degradation. Appl Microbiol Biotechnol. 93(2):545–554.
   PubMed Web of Science ®Google Scholar
• Gupte M, Kulkarni P, Ganguli BN. 2002. Antifungal antibiotics. Appl Microbiol Biotechnol. 58(1):46–57.
   PubMed Web of Science ®Google Scholar
• Hariharan G, Prasannath K. 2021. Recent advances in molecular diagnostics of fungal plant pathogens: a mini review. Front Cell Infect Microbiol. 10:600234.
   PubMed Web of Science ®Google Scholar
• Heinzelmann R, Dutech C, Tsykun T, Labbé F, Soularue JP, Prospero S. 2019. Latest advances and future perspectives in Armillaria research. Can J Plant Pathol. 41(1):1–23.
   Web of Science ®Google Scholar
• Hilton JL, Kearney PC, Ames BN. 1965. Mode of action of the herbicide, 3-amino-l, 2,4-triazole (amitrole): inhibition of an enzyme of histidine biosynthesis. Arch Biochem Biophys. 112(3):544–547.
   PubMed Web of Science ®Google Scholar
• Hsu LH, Wang HF, Sun PL, Hu FR, Chen YL. 2017. The antibiotic polymyxin B exhibits novel antifungal activity against Fusarium species. Int J Antimicrob Agents. 49(6):740–748.
   PubMed Web of Science ®Google Scholar
• Jiao S, Li Y, Gao Z, Chen R, Wang Y, Zou Z. 2019. The synthesis of an antifungal 1,2,4-triazole drug and the establishment of a drug delivery system based on zeolitic imidazolate frameworks. New J Chem. 43(47):18823–18831.
   Web of Science ®Google Scholar
• Kobetičová K, Nábělková J, Ďurišová K, Šimůnková K, Černý R. 2020. Antifungal activity of methylxanthines based on their properties. BioRes. 15(4):8110–8120.
   Web of Science ®Google Scholar
• Kubiak K, Ółciak AZ, Damszel M, Lech P, Sierota Z. 2017. Armillaria pathogenesis under climate changes. Forests. 8(4):100.
   Web of Science ®Google Scholar
• Liu D, Coloe S, Baird R, Pederson J. 2000. Rapid mini-preparation of fungal DNA for PCR. J Clin Microbiol. 38(1):471.
   PubMed Web of Science ®Google Scholar
• Mesanza N, Patten CL, Iturritxa E. 2017. Distribution and characterization of Armillaria complex in Atlantic forest ecosystems of Spain. Forests. 8(7):235.
   Web of Science ®Google Scholar
• Montes O, Diánez F, Camacho F. 2014. Doses of caffeine on the development and performance of pepper crops under greenhouse. Hortic Bras. 32(4):398–403.
   Web of Science ®Google Scholar
• Nobles M. 1965. Identification of cultures of wood-inhabiting Hymenomycetes. Can J Bot. 43(9):1097–1139.
   Google Scholar
• Nyilasi I, Kristó KE, Pálffy B, Hegyi M, Chandrasekaran M, Kadaikunnan S, Alharbi NS, Tamás P, Vágvölgyi C. 2015. Hygromycin B, carboxin and nourseothricin susceptibility of polyunsaturated fatty acid producing Mortierella and Umbelopsis strains. Acta Biol Szeged. 59(1):11–18.
   Google Scholar
• Panek J, Frąc M, Bilińska-Wielgus N. 2016. Comparison of chemical sensitivity of fresh and long-stored heat resistant Neosartorya fischeri environmental isolates using BIOLOG Phenotype MicroArray System. PLoS One. 11(1):e0147605.
   PubMed Web of Science ®Google Scholar
• Pawsey RG, Rahman MA. 1976. Chemical control of infection by honey fungus, Armillaria melica: a review. Arboric J. 2(10):468–479.
   Google Scholar
• Peng Y, Li SJ, Yan J, Tang Y, Cheng JP, Gao AJ, Yao X, Ruan JJ, Xu BL. 2021. Research progress on phytopathogenic fungi and their role as biocontrol agents. Front Microbiol. 12(1):670135.
   PubMedGoogle Scholar
• Polak A. 1983. Mode of action of 5-fluorocytosine and 5-fluorouracil in dematiaceous fungi. Sabouraudia. 21(1):15–25.
   PubMedGoogle Scholar
• Raziq F, Fox RTV. 2004. Antagonistic activities of selected fungal isolates against Armillaria mellea. Biol Agric Hortic. 22(1):41–56.
   Web of Science ®Google Scholar
• Rodríguez-Fernández E, Manzano JL, Benito JJ, Hermosa R, Monte E, Criado JJ. 2005. Thiourea, triazole and thiadiazine compounds and their metal complexes as antifungal agents. J Inorg Biochem. 99(8):1558–1572.
   PubMed Web of Science ®Google Scholar
• Santhanarajan AE, Han YH, Koh SC. 2021. The efficacy of functional composts manufactured using spent coffee ground, rice bran, biochar, and functional microorganisms. Appl Sci. 11(16):7703.
   Google Scholar
• Singh A, Agarwal A, Xu Y-j 2017. Novel cell-killing mechanisms of hydroxyurea and the implication toward combination therapy for the treatment of fungal infections. Antimicrob Agents Chemother. 61(11):e00734–17.
   PubMed Web of Science ®Google Scholar
• Shinde RB, Raut JS, Chauhan NM, Karuppayil SM. 2013. Chloroquine sensitizes biofilms of Candida albicans to antifungal azoles. Braz J Infect Dis. 17(4):395–400.
   PubMed Web of Science ®Google Scholar
• Stalpers J. 1978. Identification of wood inhabiting Aphyllophorales in pure culture. Studies in Mycology. 16:1–248.
   Google Scholar
• Stevens R, Reyes G, Kanavillil N. 2020. Examining the impact of winter and spring soil temperatures on the growth of Hypholoma fasciculare, a potential biocontrol agent against Armillaria ostoyae, in pine plantations. Front Glob Change. 3:598527.
   Google Scholar
• Sugiyama A, Sano CM, Yazaki K, Sano H. 2016. Caffeine fostering of mycoparasitic fungi against phytopathogens. Plant Signal Behav. 11(1):e1113362.
   PubMed Web of Science ®Google Scholar
• Thomidis T, Exadaktylou E. 2012. Effectiveness of cyproconazole to control Armillaria root rot of apple, walnut and kiwifruit. Crop Prot. 36(1):49–51.
   Google Scholar
• Tibpromma S, Dong Y, Ranjitkar S, Schaefer DA, Karunarathna SC, Hyde KD, Jayawardena RS, Manawasinghe IS, Bebber DP, Promputtha I, et al. 2021. Climate-Fungal pathogen modelling predicts loss of up to one-third of tea growing areas. Front Cell Infect Microbiol. 11:610567.
   PubMed Web of Science ®Google Scholar
• Toda M, Beer KD, Kuivila KM, Chiller TM, Jackson BR. 2021. Trends in agricultural Triazole fungicide use in the United States, 1992–2016 and possible implications for antifungal-resistant fungi in human disease. Environ Health Perspect. 129(5):55001–55012.
   PubMed Web of Science ®Google Scholar
• Tratrat C. 2020. 1,2,4-Triazole: A privileged scaffold for the development of potent antifungal agents - a brief review. Curr Top Med Chem. 20(24):2235–2258.
   PubMed Web of Science ®Google Scholar
• Türkkan M, Erper I. 2014. Evaluation of antifungal activity of Sodium salts against onion basal rot caused by Fusarium oxysporum f.sp. cepae. Plant Protect Sci. 50(1):19–25.
   Web of Science ®Google Scholar
• Vandeputte P, Pineau L, Larcher G, Noel T, Brèthes D, Chabasse D, Bouchara JP. 2011. Molecular mechanisms of resistance to 5-Fluorocytosine in laboratory mutants of Candida glabrata. Mycopathologia. 171(1):11–21.
   PubMed Web of Science ®Google Scholar
• Vermes A, Der Sijs H, Guchelaar HJ. 2000. Flucytosine: correlation between toxicity and pharmacokinetic parameters. Chemotherapy. 46(2):86–94.
   PubMed Web of Science ®Google Scholar
• Wonglom P, Daengsuwan W, Ito S, Sunpapao A. 2019. Biological control of Sclerotium fruit rot of snake fruit and stem rot of lettuce by Trichoderma sp. T76–12/2 and the mechanisms involved. Physiol Mol Plant Pathol. 107:1–7.
   Web of Science ®Google Scholar
• West JS, Fox RT. 2002. Stimulation of Armillaria mellea by phenolic fungicides. Ann Applied Biol. 140(3):291–295.
   Web of Science ®Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. San Diego (CA): Etats-Uni. p. 315–322.
   Google Scholar
• Yousfi H, Ranque S, Rolain JM, Bittar F. 2019. In vitro polymyxin activity against clinical multidrug-resistant fungi. Antimicrob Resist Infect Control. 8(1):66.
   PubMedGoogle Scholar
• Zaker M. 2016. Natural plant products as eco-friendly fungicides for plant diseases control - a review. Agriculturists. 14(1):134–141.
   Google Scholar
• Zhao S, Zhang X, Wei P, Su X, Zhao L, Wu M, Hao C, Liu C, Zhao D, Cheng M. 2017. Design, synthesis and evaluation of aromatic heterocyclic derivatives as potent antifungal agents. Eur J Med Chem. 137:96–107.
   PubMed Web of Science ®Google Scholar
• Zhu X, Zeng Y, Zhao X, Zou S, He YW, Liang Y. 2017. A genetic screen in combination with biochemical analysis in Saccharomyces cerevisiae indicates that phenazine-1-carboxylic acid is harmful to vesicular trafficking and autophagy. Sci Rep. 7(1):1967.
   PubMedGoogle Scholar