105
Views
0
CrossRef citations to date
0
Altmetric
Articles

Phylogenetic analysis of Ziziphora (Lamiaceae) using nuclear (nrITS) and plastid (trnL-F) DNA: suggestions for new arrangements and status changes

ORCID Icon &
Pages 835-843 | Received 09 Oct 2022, Accepted 29 Mar 2023, Published online: 24 Apr 2023

References

  • Aghajani Z, Assadian F, Masoudi S, Chalabian F, Esmaeili A, Tabatabaei-Anaraki M, Rustaiyan A. 2008. Chemical composition and in vitro antibacterial activities of the oil of Ziziphora clinopodioides and Z. capitata subsp. capitata from Iran. Chem Nat Compd. 44(3):387–389.
  • Akçiçek E, Dirmenci T, Dündar E. 2012. Taxonomical notes on Stachys L. sect. Eriostomum (Hoffmanns. & Link) Dumort. (Lamiaceae) in Turkey. Turk J Bot. 36:217–234.
  • Al-Rawashdeh IM. 2011. Molecular taxonomy among Mentha spicata, Mentha longifolia and Ziziphora tenuior populations using the RAPD technique. JJBS. 4:63–70.
  • Azadmehr A, Latifi R, Mosalla S, Hajiaghaee R, Shahnazi M. 2014. Immunomodulatory effects of Ziziphora tenuior L. extract on the dendritic cells. DARU J Pharm Sci. 22(1):6.
  • Barber JC, Francisco-Ortega J, Santos-Guerra A, Turner KG, Jansen RK. 2002. Origin of Macaronesian Sideritis L. (Lamioideae: lamiaceae) inferred from nuclear and chloroplast sequence datasets. Mol Phylogenet Evol. 23(3):293–306.
  • Baser KHC, Kurkcuoglu M, Ozek T, Tumen G, Sezik E. 1992. The volatile constituents of Ziziphora species groving in Turkey. Turk J Pharm. 2:7–16.
  • Baytop T. 1999. Türkiye’de bitkiler ile tedavi. İstanbul: Nobel Tıp Kitabevleri; p. 480.
  • Bentham G. 1834–36. Labiatarum genera et species. London: James Ridgway and Sons; p. 525–566.
  • Bentham G. 1848. Labiatae. In: de Candolle AP, editor. Prodramus naturalis regni vegetabilis. Paris: Victoris Masson; p. 462.
  • Bentham G. 1876. Labiatae. In: Bentham G, Hooker JD, editors. Genera plantarum. London (UK): Reeve and Co.; p. 1160–1196.
  • Bräuchler C, Meimberg H, Günther H. 2010. Molecular phylogeny of Menthinae (Lamiaceae, Nepetoideae, Mentheae) – taxonomy, biogeography and conflicts. Mol Phylogenet Evol. 55(2):501–523.
  • Briquet J. 1897. Labiatae. In: Engler A, Prantl K, editors. Die natürlichen pflanzenfamilien. Leipzig: Wilhelm Engelmann; p. 183–375.
  • Cai L, Ma H. 2016. Using nuclear genes to reconstruct angiosperm phylogeny at the species level: a case study with Brassicaceae species. J Syt Evol. 54(4):438–452.
  • Dakah A, Zaid S, Suleiman M, Abbas S, Wink M. 2014. In vitro propagation of the medicinal plant Ziziphora tenuior L. and evaluation of its antioxidant activity. Saudi J Biol Sci. 21(4):317–323.
  • Davis PH, Mill R, Tan K. 1988. Flora of Turkey and the East Aegean Islands (sppl.1). Edinburg: Edinburgh University Press.
  • Dellaporta SL, Wood J, Hicks JB. 1983. A plant DNA minipreparation: version II. Plant Mol Biol Rep. 1(4):19–21.
  • Dirmenci T, Dundar E, Deniz G, Arabaci T, Martin E, Jamzad Z. 2010. Morphological, karyological and phylogenetic evaluation of Cyclotrichium: a piece in the tribe Mentheae puzzle. Turk J Bot. 34:159–170.
  • Dirmenci T, Yıldız B, Akçiçek E, Martin E, Dündar E. 2011. Stachys vuralii (Lamiaceae), a new species from North Anatolia, Turkey. Ann Bot Fenn. 48(5):401–408.
  • Drew BT, Sytsma KJ. 2012. Phylogenetics, biogeography, and staminal evolution in the tribe Mentheae (Lamiaceae). Am J Bot. 99(5):933–953.
  • Dundar E, Akçiçek E, Dirmenci T, Akgün Ş. 2013. Phylogenetic analysis of the genus Stachys sect. Eriostomum (Lamiaceae) in Turkey based on nuclear ribosomal ITS sequences. Turk J Bot. 37:14–23.
  • Edmondson JR. 1982. Ziziphora L. In: Davis PH, editor. Flora of Turkey and the East Aegean Islands. Edinburgh: Edinburgh University Press.
  • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39(4):783–791.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. 41:95–98.
  • Harley RM, Atkins S, Budantsev AL, Cantino PD, Conn BJ, Grayer R, Harley MM, De Kok R, Krestovkaja T, Morales R, et al. 2004. The families and genera of vascular plant. Berlin, Heidelberg: Springer-Verlag.
  • Hedge IC. 1961. Some remarks on the perennial species of Ziziphora with special reference to those in Turkey. Notes R Bot Gard Edinb. 23:209–221.
  • Hitchcock AS, Green ML. 1929. Nomenclature proposals by British botanists. Cambridge (UK): International Botanical Congress.
  • Jamzad Z, Chase MW, Ingrouille M, Simmonds MS, Jalili A. 2003. Phylogenetic relationships in Nepeta L. (Lamiaceae) and related genera based on ITS sequence data. Taxon. 52(1):21–32.
  • Li F-W, Tan B, Buchbender V, Moran R, Rouhan G, Wang C-N, Quandt D. 2009. Identifying a mysterious aquatic fern gametophyte. Plant Syst Evol. 281(1–4):77–86.
  • Linnaeus C. 1753. Species plantarum. Stockholm: Impensis Laurentii Salvii.
  • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York (NY): Oxford University Press.
  • Öztürk Y, Aydm S, Tecik B, Başer KHC. 1995. Effects of essential oils from certain Ziziphora species on swimming performance in mice. Phytother Res. 9(3):225–227.
  • Padera F, Afra K, Sara F, Meysam K, Reza V. 2014. The aqueous extract of Ziziphora persica cause positive mood on depressive rat. Biomed Pharmacol J. 7:121–124.
  • Pastore JFB, Harley RM, Forest F, Paton A, van den Berg C. 2011. Phylogeny of the subtribe Hyptidinae (Lamiaceae tribe Ocimeae) as inferred from nuclear and plastid DNA. Taxon. 60(5):1317–1329.
  • Prather LA, Monfils AK, Posto AL, Williams RA. 2002. Monophyly and phylogeny of Monarda (Lamiaceae): Evidence from the internal transcribed spacer (ITS) region of nuclear ribosomal DNA. Syst Bot. 27:127–137.
  • Rechinger KH. 1951. Die ausdauernden Ziziphora-Arten des Iranischen Hochlandes und seiner Nachbargebiete. Phyton. 3:161–172.
  • Rechinger KH. 1982. Ziziphora. In: Browicz KH, Persson K, Wendelbo P, editors. Flora Iranica. Wiena, Graz, Austria: Akademische Druck- und Verlagsanstalt.
  • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406–425.
  • Sang T, Crawford DJ, Stuessy TF. 1995. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: ımplications for biogeography and concerted evolution. Proc Natl Acad Sci USA. 92(15):6813–6817.
  • Sezik E, Tümen G. 1984. Türkiye’de halk ilacı ve çay olarak kullanılan bitkiler üzerinde morfolojik ve anatomik çalışmalar II, Ziziphora taurica Bieb subsp. taurica. Doğa Bilimleri Dergisi. 8:98–103.
  • Sezik E, Tümen G. 1988. Türkiye’de halk ilacı ve çay olarak kullanılan bitkiler üzerinde morfolojik ve anatomik çalışmalar VI, Ziziphora taurica Bieb subsp. cleonioides (Boiss.) Davis. Uludağ Üniversitesi Eğitim Fakültesi Dergisi. 3:65–73.
  • Sezik E, Tümen G. 1989. Ziziphora taurica ssp. cleonioides ‘in uçucu yağının gaz kromatografisi ile incelenmesi. VIII Bitkisel Ilaç Hammaddeleri Toplantısı.
  • Small RL, Cronn RC, Wendel JF. 2004. LAS Johnson Review No. 2. Use of nuclear genes for phylogeny reconstruction in plants. Aust Syst Bot. 17(2):145–170.
  • Sonboli A, Mirjalili MH, Bakhtiar Z, Jamzad Z. 2013. Molecular authentication of Thymus persicus based on nrDNA ITS sequence data. Iran J Bot. 19:179–185.
  • Steane DA, de Kok RPJ, Olmstead RG. 2004. Phylogenetic relationships between Clerodendrum (Lamiaceae) and other Ajugoid genera inferred from nuclear and chloroplast DNA sequence data. Mol Phylogenet Evol. 32(1):39–45.
  • Steane DA, Scotland RW, Mabberley DJ, Olmstead RG. 1999. Molecular systematics of Clerodendrum (Lamiaceae): ITS sequences and total evidence. Am J Bot. 86(1):98–107.
  • Tabaripour R, Sheidai M, Talebi SM, Noormohammadi Z. 2018. Genetic divergence and speciation within Ziziphora capitata (Lamiaceae): molecular and micromorphological evidences. Biodiversitas. 19(2):697–705.
  • Taberlet P, Gielly L, Pautou G, Bouvet J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol. 17(5):1105–1109.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30(12):2725–2729.
  • Trusty JL, Olmstead RG, Bogler DJ, Santos-Guerra A, Francisco-Ortega J. 2004. Using molecular data to test a biogeographic connection of the Macaronesian genus Bystropogon (Lamiaceae) to the New World: a case of conflicting phylogenies. Syst Bot. 29(3):702–715.
  • Tutin TG, Heywood VH, Burges NA, Moore DM, Valentine DH, Walters SM, Webb DA. 1976. Flora Europaea. Plantaginaceae to Compositae (and Rubiaceae). Cambridge (UK): Cambridge University Press; p. 195.
  • Walker JB, Sytsma KJ. 2007. Staminal evolution in the genus Salvia (Lamiaceae): molecular phylogenetic evidence for multiple origins of the staminal lever. Ann Bot. 100(2):375–391.
  • Wang W, Li H, Chen Z. 2014. Analysis of plastid and nuclear DNA data in plant phylogenetics—evaluation and improvement. Sci China Life Sci. 57(3):280–286.
  • White T, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications; New York: Academic Press; p. 315–322.
  • Yu X-Q, Maki M, Drew BT, Paton AJ, Li H-W, Zhao J-L, Conran JG, Li J. 2014. Phylogeny and historical biogeography of Isodon (Lamiaceae): rapid radiation in south-west China and Miocene overland dispersal into Africa. Mol Phylogenet Evol. 77:183–194.
  • Yuzepchuk S. 1954. Ziziphora L., Flora of USSR. Nauka, Moscow. 21:831-411.
  • Zeng L, Zhang Q, Sun R, Kong H, Zhang N, Ma H. 2014. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Nat Commun. 5:4956.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.