65
Views
0
CrossRef citations to date
0
Altmetric
Research Articles

Morphological and molecular characterization of four Phytophthora species with the first report of Phytophthora lacustris from Pakistan

, , &
Pages 457-463 | Received 22 Oct 2023, Accepted 26 Feb 2024, Published online: 26 Mar 2024

References

  • Abad ZG, Burgess TI, Redford AJ, Bienapfl JC, Srivastava S, Mathew R, Jennings K. 2023. IDphy: an international online resource for molecular and morphological identification of Phytophthora. Plant Dis. 107(4):987–998. doi: 10.1094/PDIS-02-22-0448-FE.
  • Abdul Haq M, Shahzad S, Qamarunnisa S. 2015. White blister rusts and downy mildews from Bajaur Agency FATA, with some new records from Pakistan. Pak J Bot. 47:1569–1574.
  • Abdul Haq M, Shahzad S, Qamarunnisa S, Lodhi AM. 2021. Some zoosporic fungi of the district Bajaur, with nine new records from Pakistan. Österr Z Pilzk. 29:99–115.
  • Abdul Haq M, Shahzad S, Qamarunnisa S, Rajput AQ, Sattar S. 2023. Morphological and molecular characterization of Pythium s.l. species from Khyber Pakthunkhwa province, Pakistan, with some new records and description of Globisporangium ghaffarianum sp. nov. Asian J Mycol. 6:86–97. doi: 10.5943/ajom/6/1/8.
  • Ahmad S. 1956. Fungi of West Pakistan. Monograph No. 1: Lahore, Pakistan: Biological Society of Pakistan.
  • Ahmad S, Iqbal S, Khalid AN. 1997. Fungi of Pakistan. Islamabad: Mycological Society of Pakistan.
  • Ahmad I, Mirza JI. 1995. Occurrence of A2 mating type of. Phytophthora infestans in Pakistan. Research and development of potato production in Pakistan. In: Proceedings of the National Seminar Held at NARC; April 23–25; Islamabad: Pakistan. p. 189–196.
  • Bakkeren G, Kronstad JW, Levesque CA. 2000. Comparison of AFLP fingerprints and ITS sequences as phylogenetic markers in Ustilaginomycetes. Can J Microbiol. 92(3):510–521. doi: 10.2307/3761510.
  • Blair JE, Coffey MD, Park S-Y, Geiser DM, Kang S. 2008. A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genet Biol. 45(3):266–277. doi: 10.1016/j.fgb.2007.10.010.
  • Brasier C, Scanu B, Cooke D, Jung TJIF. 2022. Phytophthora: an ancient, historic, biologically and structurally cohesive and evolutionarily successful generic concept in need of preservation. IMA Fungus. 13(1):12. doi: 10.1186/s43008-022-00097-z.
  • Brasier CM, Cooke DE, Duncan JM, Hansen E. 2003. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides–P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile. Mycol Res. 107(Pt 3):277–290. doi: 10.1017/s095375620300738x.
  • Cooke D, Drenth A, Duncan J, Wagels G, Brasier C. 2000. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genet Biol. 30(1):17–32. doi: 10.1006/fgbi.2000.1202.
  • Das A, Nerkar S, Bawage S, Kumar A. 2013. First report of Phytophthora lacustris in India. J Plant Pathol. 95:447. www.jstor.org/stable/23721540.
  • Dong S, Zhou S. 2022. Potato late blight caused by Phytophthora infestans: from molecular interactions to integrated management strategies. J Integr Agric. 21(12):3456–3466. doi: 10.1016/j.jia.2022.08.060.
  • Drenth A, Guest D. 2013. Phytophthora palmivora in tropical tree crops. In: Lamour K, editor. Phytophthora: a global perspective. Wallingford (UK): CABI; p. 187–196.
  • Erwin DC, Ribeiro OK. 1996. Phytophthora diseases worldwide. St Paul (MN): APS Press. ISBN 0-89054-212-0.
  • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39(4):783–791. doi: 10.2307/2408678.
  • Ghaffar A, Kafi A. 1968. Fungi of Karachi. Pak J Sci. 20:5–10.
  • Granke LL, Quesada-Ocampo L, Lamour K, Hausbeck MK. 2012. Advances in research on Phytophthora capsici on vegetable crops in the United States. Plant Dis. 96(11):1588–1600. doi: 10.1094/PDIS-02-12-0211-FE.
  • Hasegawa M, Kishino H, Yano T. 1985. Dating the human-ape split by a molecular clock of mitochondrial DNA. J Mol Evol. 22(2):160–174. doi: 10.1007/BF02101694.
  • Hausbeck MK, Lamour KH. 2004. Phytophthora capsici on vegetable crops: research progress and management challenges. Plant Dis. 88(12):1292–1303. doi: 10.1094/PDIS.2004.88.12.1292.
  • Hussain A, Ahmad M, Akhtar A. 1990. Protect chillies crop from Phytophthora-a new disease in Pakistan. Capsicum Newsl. 8–9:59. https://cpi.nmsu.edu/_assets/documents/cap-egg-8-9.pdf.
  • Hyder S, Inam-Ul-Haq M, Fatima N, Hannan A, Alam MM, Iqbal M. 2019. First report of root rot of tomato caused by Phytophthora syringae in Pakistan. Plant Dis. 103(3):590–590. doi: 10.1094/PDIS-06-18-1104-PDN.
  • Hyder S, Naseem S, Azhar S, Ashfaq M, Ali Z, Khalid A, Inam-Ul-Haq M. 2018. Disease incidence and severity of Pythium spp. and Phytophthora spp. affecting chili pepper and tomato crops in Punjab, Pakistan. Philipp Agric Sci. 101:36–44. http://www.pas-uplbcafs.org/article.php?id=639.
  • Iftikhar Y, Shafqaat A, Zeshan MA, Khan M, Sajid A, Azmat S, Ghuffar S, Mubeen M. 2022. Quantifying the spatial dynamics and severity of citrus gummosis disease in Sargodha. Pak J Phytopathol. 34(1):39–46. doi: 10.33866/phytopathol.034.01.0741.
  • Irfan-Ud-Din Raziq F, Hussain, S, Saifullah  . 2012. Occurrence of Phytophthora root rot (Phytophthora capsici L.) of pepper in Peshawar and Malakand divisions. Sarhad J Agric. 28:443–450. https://www.aup.edu.pk/sj_pdf/11.pdf.
  • Jahangir  . 1998. Phytophthora syringae causing crown and root rot disease of apple in Malakand Division, Pakistan. Pak J Bot. 30(1):151. http://www.pakbs.org/pjbot/PDFs/30(1)/PJB30(1)20.pdf.
  • Kanoun-Boulé M, Vasconcelos T, Gaspar J, Vieira S, Dias-Ferreira C, Husson C. 2016. Phytophthora × alni and Phytophthora lacustris associated with common alder decline in Central Portugal. Forest Pathol. 46(2):174–176. doi: 10.1111/efp.12273.
  • Khan SH, Idrees M, Muhammad F, Mahmood A. Zaidi, SH. 2004. Incidence of shisham (Dalbergia sissoo Roxb.) decline and in vitro response of isolated fungus spp. to various fungicides. Int J Agric Biol. 6:611–614.
  • Kirk PM, Cannon PF, David J, Stalpers JA. 2008. Ainsworth and Bisby’s dictionary of the fungi. 10th ed. UK: CABI publishing.
  • Lamour K. 2013. Phytophthora: a global perspective: Wallingford (UK): CABI.
  • Lévesque CA, De Cock WAM. 2004. Molecular phylogeny and taxonomy of the genus Pythium. Mycol Res. 108(Pt 12):1363–1383. doi: 10.1017/S0953756204001431.
  • Martin FN. 2013. Molecular identification of Phytophthora. In: Lamour K, editor. Phytophthora: a global perspective. Wallingford (UK): CABI; p. 19–27.
  • Mchau GR, Coffey MD. 1994. An integrated study of morphological and isozyme patterns found within a worldwide collection of Phytophthora citrophthora and a redescription of the species. Mycol Res. 98(11):1291–1299. doi: 10.1016/S0953-7562(09)80301-8.
  • Minhas MA. 1968. M.Sc. Thesis. University of Agriculture Faisalabad.
  • Möller EM, Bahnweg G, Sandermann H, Geiger HH. 1992. A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies and infected plant tissues. Nucleic Acids Res. 20(22):6115–6116. doi: 10.1093/nar/20.22.6115.
  • Nawaz K, Shahid AA, Subhani MN, Iftikhar S, Anwar W. 2018. First report of leaf spot caused by Phytophthora capsici on chili pepper (Capsicum frutescens L.) in Pakistan. J Plant Pathol. 100(1):127–127. doi: 10.1007/s42161-018-0018-x.
  • Nechwatal J, Bakonyi J, Cacciola SO, Cooke DEL, Jung T, Nagy ZÁ, Vannini A, Vettraino AM, Brasier CM. 2013. The morphology, behaviour and molecular phylogeny of Phytophthora taxon Salixsoil and its redesignation as Phytophthora lacustris sp. nov. Plant Pathol. 62(2):355–369. doi: 10.1111/j.1365-3059.2012.02638.x.
  • Nowak K, Trzewik A, Tułacz D, Orlikowska T, Orlikowski L. 2015. Characterization of Polish Phytophthora lacustris isolates obtained from water environments. Pol J Environ Stud. 24:619–630. doi: 10.15244/pjoes/29195.
  • Riethmüller A, Voglmayr H, Göker M, Weiß M, Oberwinkler F. 2002. Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences. Mycologia. 94(5):834–849. doi: 10.1080/15572536.2003.11833177.
  • Saleem A, Ansar M, Iqbal A. 1989. Root rot and collar rot of chillies caused by Phytophthora capsici Leon., a new record for Pakistan. J Agric Res. 27:155–156.
  • Saleem A, Majeed K, Aslam M, Ali S. 1992. Root rot of berseem caused by Phytophthora megasperma Kuan and Erwin f.sp. medicaganis. A new record for Pakistan. Pak J Phytopathol. 4:72.
  • Saleem A, Majid K, Aslam M, Ali S. 1991. Citrus gummosis caused by Phytophthora citrophthora (RE Sm. & EH SM.) Leonian-a new record in Pakistan. Pak J Phytopathol. 3:62–63.
  • Saleem A, Majid K, Aslam M, Hamid K, Shahid M, Ali S. 1993. New record of Phytophthora spp., causing stem/root rot in brinjals, lucerne and soybean in Pakistan. Pak J Phytopathol. 5:131–132.
  • Shahid AA, Nawaz K, Iftikhar S, Anwar W, Subhani MN. 2017. New record of fruit rot of bitter gourd (Momordica charantia) caused by Phytophthora palmivora in Pakistan. Plant Dis. 101(7):1331–1331. doi: 10.1094/PDIS-01-17-0049-PDN.
  • Shakir AS, Mirza JH, Akhtar AS, Majeed K. 1994. First report of fungal pathogen of cockscomb from Pakistan. Pak J Phytopathol. 6:161–162.
  • Sosa MC, Lutz MC, Vélez ML, Greslebin A. 2015. Pre-harvest rot of pear fruit Golden Russet Bosc caused by Phytophthora lacustris and Phytophthora drechsleri in Argentina. Australasian Plant Dis Notes. 10(1):18–20. doi: 10.1007/s13314-015-0169-y.
  • Tamura K, Stecher G, Kumar S. 2021. MEGA 11: molecular evolutionary genetics analysis Version 11. Mol Biol Evol. 38(7):3022–3027. doi: 10.1093/molbev/msab120.
  • Waterhouse GM. 1963. Key to the species of Phytophthora de Barry. Mycol Pap. 92:1–22.
  • Yang X, Tyler BM, Hong C. 2017. An expanded phylogeny for the genus Phytophthora. IMA Fungus. 8(2):355–384. doi: 10.5598/imafungus.2017.08.02.09.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.