Evaluation of DNA barcoding efficiency of cpDNA barcodes in selected Philippine Leea L. (Vitaceae)

References

• APG (Angiosperm Phylogeny Group). 2009. “An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III.” Botanical Journal of the Linnean Society 141 (4): 399–436.
   Web of Science ®Google Scholar
• Aida, A. A., C. Man, B. Yaakob, A. R. Raha, and R. Son. 2007. “Detection of pig derivatives in food products for halal authentication by polymerase chain reaction–restriction fragment length polymorphism.” Journal of the Science of Food and Agriculture 87 (4): 569–572.
   Web of Science ®Google Scholar
• Bilia, A. R. 2013. “NMR as integrative or alternative analytical tool for the quality control of herbal drugs and their preparations.” Planta Medica 79 (5): OP18.
   Google Scholar
• CBOL-PWG (Consortium for the Barcode of Life – Plant Working Group). 2009. “A DNA barcode for land plants.” Proceedings of the National Academy of Sciences of the United States of America 106: 12794–12797.
   PubMed Web of Science ®Google Scholar
• Chase, M. W., and H. H. Hills. 1991. “Silica gel: an ideal material for field preservation of leaf samples for DNA studies.” Taxon 40 (2): 215–220.
   Web of Science ®Google Scholar
• Chen, S., H. Yao, J. Han, C. Liu, J. Song, L. Shi, Y. Zhu, et al. 2010. “Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species.” PloS One 5 (1): e8613.
   PubMed Web of Science ®Google Scholar
• Fazekas, A. J., K. S. Burgess, P. R. Kesanakurti, S. W. Graham, S. G. Newmaster, B. C. Husband, D. M. Percy, M. Hajibabaei, and S. C. Barrett. 2008. “Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well.” PLoS One 3 (7): e2802.
   PubMed Web of Science ®Google Scholar
• Fazekas, A. J., M. L. Kuzminia, S. G. Newmaster, and M. Hollingsworth. 2012. In DNA Barcodes: Methods and Protocols, Methods in Molecular Biology, edited by Kress W. J., and D. L. Erickson, 858: 223–252. Berlin Heidelberg: Springer.
   Google Scholar
• Galimberti, A., F. De Mattia, A. Losa, I. Bruni, S. Federici, M. Casiraghi, S. Martellos, and M. Labra. 2013. “DNA barcoding as a new tool for food traceability.” Food Research International 50 (1): 55–63.
   Web of Science ®Google Scholar
• Gouy, M., S. Guindon, and O. Gascuel. 2010. “SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building.” Molecular Biology and Evolution 27 (2): 221–224.
   PubMed Web of Science ®Google Scholar
• Hebert, P. D., A. Cywinska, S. L. Ball, and J. R. deWaard. 2003. “Biological identifications through DNA barcodes.” Proceedings of the Royal Society of London B: Biological Sciences 270 (1512): 313–321.
   PubMed Web of Science ®Google Scholar
• Hollingsworth, P. M., S. W. Graham, and D. P. Little. 2011. “Choosing and using a plant DNA barcode.” PloS One 6 (5): e19254.
   PubMed Web of Science ®Google Scholar
• Kimura, M. 1980. “A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.” Journal of Molecular Evolution 16 (2): 111–120.
   PubMed Web of Science ®Google Scholar
• Kress, W. J., and D. L. Erickson. 2007. “A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region.” PLoS One 2 (6): e508.
   PubMed Web of Science ®Google Scholar
• Kress, W. J., K. J. Wurdack, E. A. Zimmer, L. A. Weigt, and D. H. Janzen. 2005. “Use of DNA barcodes to identify flowering plants.” Proceedings of the National Academy of Sciences of the United States of America 102 (23): 8369–8374.
   PubMed Web of Science ®Google Scholar
• Lahaye, R., M. Van der Bank, D. Bogarin, J. Warner, F. Pupulin, G. Gigot, O. Maurin, S. Duthoit, T. G. Barraclough, and V. Savolainen. 2008. “DNA barcoding the floras of biodiversity hotspots.” Proceedings of the National Academy of Sciences of the United States of America 105 (8): 2923–2928.
   PubMed Web of Science ®Google Scholar
• Li, M., K. Y. Au, H. Lam, L. Cheng, R. W. Jiang, P. P. H. But, and P. C. Shaw. 2012. “Identification of Baiying (Herba Solani Lyrati) commodity and its toxic substitute Xungufeng (Herba Aristolochiae Mollissimae) using DNA barcoding and chemical profiling techniques.” Food Chemistry 135 (3): 1653–1658.
   PubMed Web of Science ®Google Scholar
• Lum, M. R., and A. M. Hirsch. 2006. “Molecular methods for the authentication of botanicals and detection of potential contaminants and adulterants.” Acta Horticulturae 720: 50–72.
   Google Scholar
• Maramba, N. P. C., J. D. Saludez, I. C. Sia, O. Y. Alegre, G. A. Solis-de Asis, L. B. Bagnaes, R. U. Macalagay, and A. R. Bajao. 1982. Guidebook on the Proper Use of Medicinal Plants. Quezon City, Philippines: Katha Publishing Co., Inc.
   Google Scholar
• Newmaster, S. G., A. J. Fazekas, R. A. D. Steeves, and J. Janovec. 2008. “Testing candidate plant barcode regions in the Myristicaceae.” Molecular Ecology Resources 8 (3): 480–490.
   PubMed Web of Science ®Google Scholar
• Ng, C. C., C. Y. Lin, W. S. Tzeng, C. C. Chang, and Y. T. Shyu. 2005. “Establishment of an internal transcribed spacer (ITS) sequence-based differentiation identification procedure for mei (Prunus mume) and plum (Prunus salicina) and its use to detect adulteration in preserved fruits.” Food Research International 38 (1): 95–101.
   Web of Science ®Google Scholar
• Pelser, P. B., J. F. Barcelona, and D. L. Nickrent (eds.). 2011 onwards. Co's Digital Flora of the Philippines. Accessed March 21, 2015. http://www.philippineplants.org/Families/Vitaceae.html
   Google Scholar
• Ren, H., K. Pan, Z. Chen, and R. Wang. 2002. “Structural characters of leaf epidermis and their systematic significance in Vitaceae.” Acta Phytotaxonomica Sinica 41 (6): 531–544.
   Google Scholar
• Ridsdale, C. E. 1974. “A revision of the family Leeaceae.” Blumea-Biodiversity, Evolution and Biogeography of Plants 22 (1): 57–100.
   Google Scholar
• Ridsdale, C. E. 1976. “Leeaceae.” Flora Malesiana-Series 1, Spermatophyta 7 (1), 755–782.
   Google Scholar
• Roy, A., A. Mallick, and A. Kaur. 2013. “Adulteration and substitution in Indian medicinal plants.” International Journal of Pharmaceutical Research and Bio-Science 2 (1): 208–18.
   Google Scholar
• Sasikumar, B., S. Syamkumar, R. Remya, and T. John Zachariah. 2005. “PCR based detection of adulteration in the market samples of turmeric powder.” Food Biotechnology 18 (3): 299–306.
   Web of Science ®Google Scholar
• Shetty, B.V., and P. Singh. 2000. “Vitaceae.” In Flora of India, edited by Singh, N. P., J. N. Vohra, P. K. Hajra, D. K. Singh, 5: 246–324. Calcutta: Botanical Survey of India.
   Google Scholar
• Soltis, D. E., P. S. Soltis, M. W. Chase, M. E. Mort, D. C. Albach, M. Zanis, V. Savolainen, et al. 2000. “Angiosperm phylogeny inferred from 18S rDNA, rbcL and atpB sequences.” Botanical Journal of the Linnean Society 133 (4): 381–461.
   Web of Science ®Google Scholar
• Song, J., H. Yao, Y. Li, X. Li, Y. Lin, C. Liu, J. Han, C. Xie, and S. Chen. 2009. “Authentication of the family Polygonaceae in Chinese pharmacopoeia by DNA barcoding technique.” Journal of Ethnopharmacology 124 (3): 434–439.
   PubMed Web of Science ®Google Scholar
• Taberlet, P., L. Gielly, G. Pautou, and J. Bouvet. 1991. “Universal primers for amplification of three non-coding regions of chloroplast DNA.” Plant Molecular Biology 17 (5): 1105–1109.
   PubMed Web of Science ®Google Scholar
• Tamura, K., G. Stecher, D. Peterson, A. Filipski, and S. Kumar. 2013. “MEGA6: molecular evolutionary genetics analysis version 6.0.” Molecular Biology and Evolution 30 (12): 2725–2729.
   PubMed Web of Science ®Google Scholar
• Uji, T., 2001. “Leea van Royen ex L.” In PROSEA: Plant Resources of South-East Asia 12, (2) medicinal and poisonous plants 2, edited by van Valkenburg, J. L. C. H. and N. Bunyapraphatsara, 327–331. Leiden, the Netherlands: Backhuys Publishers.
   Google Scholar
• Viljoen, A. M., and I. Vermaak. 2013. “Standardization and quality control of herbal medicinal products – Does vibrational spectroscopy offer the solution?” Planta Medica 79(05): OP20.
   Google Scholar
• Wallace, L. J., S. M. Boilard, S. H. Eagle, J. L. Spall, S. Shokralla, and M. Hajibabaei. 2012. “DNA barcodes for everyday life: Routine authentication of natural health products.” Food Research International 49 (1): 446–452.
   Web of Science ®Google Scholar
• Wen, J. 2007. “Leeaceae.” In The Families and Genera of Vascular Plants, Volume IX: Flowering Plants, Eudicots, edited by K. Kubitzki, 221–225. Berlin Heidelberg: Springer.
   Google Scholar
• Yao, H., J. Song, C. Liu, K. Luo, J. Han, Y. Li, X. Pang, et al. 2010. “Use of ITS2 region as the universal DNA barcode for plants and animals.” PloS One 5 (10): e13102.
   PubMed Web of Science ®Google Scholar
• Yao, H., J. Y. Song, X. Y. Ma, C. Liu, Y. Li, H. X. Xu, J. P. Han, L. S. Dun, and S. L. Chen. 2009. “Identification of Dendrobium species by a candidate DNA barcode sequence: the chloroplast psbA-trnH intergenic region.” Planta Medica 75 (6): 667–669.
   PubMed Web of Science ®Google Scholar