705
Views
4
CrossRef citations to date
0
Altmetric
Article; Agriculture and Environmental Biotechnology

Genetic characterization of MHC class II DQB exon 2 variants in gayal (Bos frontalis)

, , , , &
Pages 827-833 | Received 27 Dec 2013, Accepted 07 Mar 2014, Published online: 19 Nov 2014

References

  • Flajnik MF, Kasahara M. Comparative genomics of the MHC: glimpses into the evolution of the adaptive immune system. Immunity. 2001;15:351–362. doi:10.1016/S1074-7613(01)00198-4
  • Andersson L. Major histocompatibility complex evolution. In: Schook por LB, Lamont SJ, editors. The major histocompatibility complex of domestic animal species. Boca Raton (FL): CRC Press; 1996. p. 1–5.
  • Ploegh H, Watts C. Antigen recognition. Curr Opin Immunol. 1998;10:57–58. doi:10.1016/S0952-7915(99)00053-9
  • Klein J. Nature history of the major histocompatibility complex. New York (NY): Wiley; 1986.
  • Kappes D, Strominger JL. Human class II major histocompatibility complex genes and proteins. Annu Rev Biochem. 1988;57:991–1028. doi:10.1146/annurev.bi.57.070188.005015
  • Sigurdardottir S, Borsch C, Gustafsson K, Andersson L. Gene duplications and sequence polymorphism of bovine class II DQB genes. Immunogenetics. 1992;35:205–213. doi:10.1007/BF00185115
  • Russell BC, Gallagher A, Craigmile S, Glass EJ. Characterization of cattle cDNA sequences from two DQA loci. Immunogenetics. 1997;45:455–458. doi:10.1007/s002510050232
  • Glass EJ, Oliver RA, Russell GC. Duplicated DQ haplotypes increases the complexity of restriction element usage in cattle. J Immunol. 2000;165:134–138.
  • Norimine J, Brown WC. Intrahaplotype and interhaplotype pairing of bovine leukocyte antigen DQA and DQB molecules generate functional DQ molecules important for priming CD4(+) T-lymphocyte responses. Immunogenetics. 2005;57:750–762. doi:10.1007/s00251-005-0045-6
  • Stern LJ, Brown JH, Jardetzky TS, Gorga JC, Urban RG, Strominger JL, Wiley DC. Crystal structure of the human class II MHC protein HLA-DRA1 complexed with an influenza virus peptide. Nature. 1994;368:215–221. doi:10.1038/368215a0
  • Russell GC. Sequence duplication at the 3′ end of BoLA-DQB genes suggests multiple allelic lineages. Immunogenetics. 2000;52:101–106. doi:10.1007/s002510000257
  • Wang K, Sun DX, Zhang Y. Identification of genetic variations of exon 2 of BoLA-DQB gene in five Chinese yellow cattle breeds. Int J Immunogenet. 2007;34:115–118. doi:10.1111/j.1744-313X.2007.00654.x
  • Mondal M, Dhali A, Rajkhowa C, Prakash BK. Secretion patterns of growth hormone in growing captive mithuns (Bos frontalis). Zoolog Sci. 2004;21:1125–1129. doi:10.2108/zsj.21.1125
  • Chi J, Fu B, Nie W, Wang J, Graphodatsky AS, Yang F. New insights into the karyotypic relationships of Chinese muntjac (Muntiacus reevesi), forest musk deer (Moschus berezovskii) and gayal (Bos frontalis). Cytogenet Genome Res. 2005;108:310–316. doi:10.1159/000081520
  • Mohan M, Chandan R, Prakash BS. Development and validation of a highly sensitive economic enzyme immunoassay for prolactin determination in blood plasma of mithun (Bos frontalis) and its application during milk let down and cyclicity. Anim Reprod Sci. 2007;99:182–195. doi:10.1016/j.anireprosci.2006.05.003
  • Groenen MA, van der Poel JJ, Dijkhof RJ, Giphart MJ. The nucleotide sequence of bovine MHC class II DQB and DRB genes. Immunogenetics. 1990;31:37–44. doi:10.1007/BF00702487
  • Wang K, Sun D, Xu R, Zhang Y. Identification of 19 new BoLA-DQB alleles. Anim Genet. 2005;36:166–167. doi:10.1111/j.1365-2052.2005.01238.x
  • Xu A, Park C, Lewin HA. Both DQB genes are expressed in BoLA haplotypes carrying a duplicated DQ region. Immunogenetics. 1994;39:316–321. doi:10.1007/BF00189227
  • Maillard JC, Chantal I, Berthier D. Sequencing of four new BoLA-DRB3 and six new BoLA-DQB alleles. Anim Genet. 2001;32:44–46. doi:10.1046/j.1365-2052.2001.0647e.x
  • Marello KL, Gallagher A, McKeever DJ, Spooner RL, Russell GC. Expression of multiple DQB genes in Bos indicus cattle. Anim Genet. 1995;26:345–349. doi:10.1111/j.1365-2052.1995.tb02672.x
  • Sena MPC, Schneider BB, Brenig RL, Honeycutt DA, Honeycutt JE, Womack LC. Polymorphism and gene organization of water buffalo MHC-DQB genes show homology to the BoLA DQB region. Anim Genet. 2010;42:378–385. doi:10.1111/j.1365-2052.2010.02157.x
  • Gou X, Wang YQ, Yang SL, Deng WD, Mao HM. Genetic diversity and origin of gayal and cattle in Yunnan revealed by mtDNA D-loop and SRY gene sequence variation. J Anim Breed Genet. 2010;127:154–160. doi:10.1111/j.1439-0388.2009.00807.x
  • Sambrook J, Fritsch EF, Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. New York (NY): Cold Spring Harbor Laboratory Press; 1989.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The ClustulX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997;24:4876–4882. doi:10.1093/nar/25.24.4876
  • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: molecular evolutionary genetics 14 analysis (MEGA) software version 4.0. Mol Biol Evol. 2007;24:1596–1599. doi:10.1093/molbev/msm092
  • Nei M, Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol. 1986;3:418–426.
  • Jukes TH, Cantor CR. Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. New York (NY): Academic Press; 1969. p. 21–132.
  • Kimura MA. Simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Mol Evol. 1980;16:111–120. doi:10.1007/BF01731581
  • Sriram V, Willard CA, Liu J, Brutkiewicz RR. Importance of N-linked glycosylation in the functional expression of murine CD1d1. Immunology. 2007;123:272–281. doi: 10.1111%2Fj.1365-2567.2007.02696.x
  • Wu TT, Kabat EA. An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity. J Exp Med. 1970;132:211–250. doi:10.1084/jem.132.2.211
  • Takeshima S, Chen S, Mik M, Kado M, Aida Y. Distribution and origin of bovine major histocompatibility complex class II DQA1 genes in Japan. Tissue Antigens. 2008;72:195–205. doi:10.1111/j.1399-0039.2008.01092.x
  • Hunt HD, Fulton JE. Analysis of polymorphisms in the major expressed class I locus (B-FIV) of the chicken. Immunogenetics. 1998;47:456–467. doi:10.1007/s002510050383
  • Pharr GT, Hunt HD, Bacon LD, Dodgson JB. Identification of class II major histocompatibility complex polymorphisms predicted to be important in peptide antigen presentation. Poult Sci. 1993;72:1312–1317. doi:10.3382/ps.0721312
  • Xia C, Lin CY, Xu GX, Hu TJ, Yang TY. cDNA cloning and genomic structure of the duck (Anas platyrhynchos) MHC class I gene. Immunogenetics. 2004;56:304–309. doi:10.1007/s00251-004-0685-y
  • Hughes AL, Yeager M. Natural selection at major histocompatibility complex loci of vertebrates. Annu Rev Genet. 1998;32:415–435. doi:10.1146/annurev.genet.32.1.415
  • Amills M, Sulas C, Sanchez A, Bertoni G, Zanoni R, Obexer-Ruff G. Nucleotide sequence and polymorphism of the caprine major histocompatibility complex class II DQA1 (Cahi-DQA1) gene. Mol Immunol. 2005;42:375–379. doi:10.1016/j.molimm.2004.07.009
  • Traul DL, Bhushan B, Eldridge JA, Crawford TB, Li H, Davies CJ. Characterization of Bison bison major histocompatibility complex class IIa haplotypes. Immunogenetics. 2005;57:845–854. doi:10.1007/s00251-005-0042-9
  • Zhou H, Hickford JG. Allelic polymorphism in the ovine DQA1 gene. J Anim Sci. 2004;82:8–16.