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Research Article

Diversification of animal gut microbes and NRPS gene clusters in some carnivores, herbivores and omnivores

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Pages 1280-1287 | Received 04 Sep 2020, Accepted 08 Oct 2020, Published online: 09 Nov 2020

References

  • Wang L, Ravichandran V, Yin Y, et al. Natural products from mammalian gut microbiota. Trends Biotechnol. 2019;37(5):492–504.
  • Rooks MG, Garrett WS, Gut microbiota, metabolites and host immunity. Nat Rev Immunol. 2016;16(6):341–352.
  • Kau AL, Ahern PP, Griffin NW, et al. Human nutrition, the gut microbiome and the immune system. Nature. 2011;474(7351):327–336.
  • Koppel N, Balskus EP, Exploring and understanding the biochemical diversity of the human microbiota. Chem Biol. 2016;23(1):18–30.
  • Mousa WK, Athar B, Merwin NJ, et al. Antibiotics and specialized metabolites from the human microbiota. Nat Prod Rep. 2017;34(11):1302–1331.
  • Donia MSA, Fischbach MA , Human microbiota. Small molecules from the human microbiota. Science. 2015;349(6246):1254766.
  • Ley RE, Hamady M, Lozupone CA, et al. Evolution of mammals and their gut microbes. Science. 2008;320(5883):1647–1651.
  • Lemetre C, Maniko J, Charlop-Powers Z, et al. Bacterial natural product biosynthetic domain composition in soil correlates with changes in latitude on a continent-wide scale. Proc Natl Acad Sci USA. 2017;114(44):11615–11620.
  • Dejong CA, Chen GM, Li H, et al. Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching. Nat Chem Biol. 2016;12(12):1007–1014.
  • Song C, Wang B, Tan J, et al. Comparative analysis of the gut microbiota of black bears in China using high-throughput sequencing. Mol Genet Genomics. 2017;292(2):407–414.
  • Ayuso-Sacido A, Genilloud O, New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups. Microbial Ecol. 2005;49(1):10–24.
  • Knudsen M, Søndergaard D, Tofting-Olesen C, et al. Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases. Bioinformatics. 2016;32(3):325–329.
  • Gaulke CA, Arnold H, Humphreys IR, et al. Ecophylogenetics clarifies the evolutionary association between mammals and their gut microbiota. Mbio. 2018;9(5):e01348-18.
  • Youngblut ND, Reischer GH, Walters W, et al. Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. Nat Commun. 2019;10(1):1–15.
  • Dornisch E, Pletz J, Glabonjat RA, et al. Biosynthesis of the enterotoxic pyrrolobenzodiazepine natural product tilivalline. Angew Chem. 2017;56(46):14753–14757.
  • Guo C, Chang FY, Wyche TP, et al. Discovery of reactive microbiota-derived metabolites that inhibit host proteases. Cell. 2017;168(3):517–526.
  • Milshteyn A, Colosimo DA, Brady SF, Accessing bioactive natural products from the human microbiome. Cell Host Microbe. 2018;23(6):725–736.
  • Lam YC, Crawford JM, Discovering antibiotics from the global microbiome. Nat Microbiol. 2018;3(4):392–393.
  • Hug JJ, Krug D, Müller R, Bacteria as genetically programmable producers of bioactive natural products. Nat Rev Chem. 2020;4(4):172–122.
  • Gilbert JA, Blaser MJ, Caporaso JG, et al. Current understanding of the human microbiome. Nat Med. 2018;24(4):392–400.
  • Moeller AH, Caro-Quintero A, Mjungu D, et al. Cospeciation of gut microbiota with hominids. Science. 2016;353(6297):380–382.
  • Groussin M, Mazel F, Sanders JG, et al. Unraveling the processes shaping mammalian gut microbiomes over evolutionary time. Nat Commun. 2017;8(1):14319.
  • Ley RE, Peterson DA, Gordon JI, Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006;124(4):837–848.