Transcriptome analysis unravels differential genes involved in essential oil content in callus and tissue culture seedlings of Lavandula angustifolia

References

• Li H, Li J, Dong Y, et al. Time-series transcriptome ­provides insights into the gene regulation network ­involved in the volatile terpenoid metabolism during the flower development of lavender. BMC Plant Biol. 2019;19(1):313. doi: 10.1186/s12870-019-1908-6.
   PubMedGoogle Scholar
• Li J, Wang Y, Dong Y, et al. The chromosome-based lavender genome provides new insights into Lamiaceae evolution and terpenoid biosynthesis. Hortic Res. 2021;8(1):53–53. doi: 10.1038/s41438-021-00536-9.
   PubMed Web of Science ®Google Scholar
• Guo D, Kang K, Wang P, et al. Transcriptome profiling of spike provides expression features of genes related to terpene biosynthesis in lavender. Sci Rep. 2020;10(1):6933. doi: 10.1038/s41598-020-63950-4.
   PubMed Web of Science ®Google Scholar
• Prusinowska R, Śmigielski KB. Composition, biological properties and therapeutic effects of lavender (Lavandula angustifolia L.). A review. Herba Polonica. 2014;60(2):56–66. doi: 10.2478/hepo-­2014-­0010.
   Google Scholar
• Silva GLd, Luft C, Lunardelli A, et al. Antioxidant, analgesic and anti-inflammatory effects of lavender essential oil. An Acad Bras Cienc. 2015;87(2 Suppl):1397–1408. doi: 10.1590/0001-3765201520150056.
   PubMed Web of Science ®Google Scholar
• Tholl D. Terpene synthases and the regulation, diversity and biological roles of terpene metabolism. Curr Opin Plant Biol. 2006;9(3):297–304. doi: 10.1016/j.pbi.2006.03.014.
   PubMed Web of Science ®Google Scholar
• Aaron JA, Christianson DW. Trinuclear metal clusters in catalysis by terpenoid synthases. Pure Appl Chem. 2010;82(8):1585–1597. doi: 10.1351/PAC-CON-09-09-37.
   PubMed Web of Science ®Google Scholar
• Benabdelkader T, Guitton Y, Pasquier B, et al. Functional characterization of terpene synthases and chemotypic variation in three lavender species of section Stoechas. Physiol Plant. 2015;153(1):43–57. doi: 10.1111/ppl.12241.
   PubMed Web of Science ®Google Scholar
• Wang Y, Zou J, Jia Y, et al. The mechanism of lavender essential oil in the Treatment of acute colitis based on "quantity-effect" weight coefficient network pharmacology. Front Pharmacol. 2021;12:644140. doi: 10.3389/fphar.2021.644140.
   PubMed Web of Science ®Google Scholar
• Adal E, Eren S. Rosemary and oregano essential oils as natural antioxidant to preserve pistachio puree. J Food Sci Eng. 2019;9(8):318–332. doi: 10.17265/2159-5828/2019.08.003.
   Google Scholar
• Fan S, Jia Y, Wang R, et al. Multi-omics analysis the differences of VOCs terpenoid synthesis pathway in maintaining obligate mutualism between Ficus hirta Vahl and its pollinators. Front Plant Sci. 2022;13:1006291. doi: 10.3389/FPLS.2022.1006291.
   PubMed Web of Science ®Google Scholar
• Bushra A, Zainab S, Sumaya H. Qualitative and quantitative evaluation of active constituents in callus of lavandula angustifolia plant in vitro. Baghdad Sci J. 2020;2(SI):0591–0591. doi: 10.21123/bsj.2020.17.2(si).0591.
   Google Scholar
• Murashige T, Skoog F. A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant. 1962;15(3):473–497. doi: 10.1111/j.1399-3054.1962.tb08052.x.
   Web of Science ®Google Scholar
• Kirimer N, Mokhtarzadeh S, Demirci B, et al. Phytochemical profiling of volatile components of Lavandula angustifolia Miller propagated under in vitro conditions. Ind Crops Prod. 2017;96:120–125. doi: 10.1016/j.indcrop.2016.11.061.
   Web of Science ®Google Scholar
• Falk L, Biswas K, Boeckelmann A, et al. An efficient method for the micropropagation of lavenders: regeneration of a unique mutant. J Essent Oil Res. 2009;21(3):225–228. doi: 10.1080/10412905.2009.9700154.
   Web of Science ®Google Scholar
• Lesage-Meessen L, Bou M, Sigoillot JC, et al. Essential oils and distilled straws of lavender and lavandin: a review of current use and potential application in white biotechnology. Appl Microbiol Biotechnol. 2015;99(8):3375–3385. doi: 10.1007/s00253-015-6511-7.
   PubMed Web of Science ®Google Scholar
• Grabherr MG, Haas BJ, Yassour M, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011;29(7):644–652. doi: 10.1038/nbt.1883.
   PubMed Web of Science ®Google Scholar
• Ma Q, Song L, Niu Z, et al. Red light regulates the metabolite biosynthesis in the leaves of “Huangjinya” through amino acid and phenylpropanoid metabolisms. Front Plant Sci. 2021;12:810888. doi: 10.3389/fpls.2021.810888.
   PubMed Web of Science ®Google Scholar
• Zhang J, Liang L, Xie Y, et al. Transcriptome and metabolome analyses reveal molecular responses of two pepper (Capsicum annuum L.) cultivars to cold stress. Front Plant Sci. 2022;13:975330. doi: 10.3389/fpls.2022.819630.
   PubMedGoogle Scholar
• Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2 [-Delta Delta C [T]] normalized to glyceraldehyde-3-phosphate dehydrogenase levels. qRT-PCR was method. Methods. 2001;25(4):402–408. doi: 10.1006/meth.2001.1262.
   PubMed Web of Science ®Google Scholar
• Sharma N, Khurana P. Genome-wide identification, characterization and expression analysis of the BRI1 gene family in Triticum aestivum L. Plant Biotechnol Rep. 2022;16(6):777–791. doi: 10.1007/s11816-022-00762-0.
   Web of Science ®Google Scholar
• Bojar D, Martinez J, Santiago J, et al. Crystal structures of the phosphorylated BRI 1 kinase domain and implications for brassinosteroid signal initiation. Plant J. 2014;78(1):31–43. doi: 10.1111/tpj.12445.
   PubMed Web of Science ®Google Scholar
• Demissie ZA, Sarker LS, Mahmoud SS. Cloning and functional characterization of β-phellandrene synthase from Lavandula angustifolia. Planta. 2011;233(4):685–696. doi: 10.1007/s00425-010-1332-5.
   PubMed Web of Science ®Google Scholar
• Demissie ZA, Cella MA, Sarker LS, et al. Cloning, functional characterization and genomic organization of 1, 8-cineole synthases from Lavandula. Plant Mol Biol. 2012;79(4-5):393–411. doi: 10.1007/s11103-012-9920-3.
   PubMed Web of Science ®Google Scholar
• Lane A, Boecklemann A, Woronuk GN, et al. A genomics resource for investigating regulation of essential oil production in Lavandula angustifolia. Planta. 2010;231(4):835–845. doi: 10.1007/s00425-009-1090-4.
   PubMed Web of Science ®Google Scholar
• Sato Y, Minamikawa MF, Pratama BB, et al. Autonomous differentiation of transgenic cells requiring no external hormone application: the endogenous gene expression and phytohormone behaviors. Front Plant Sci. 2024;15:1308417–1308417. doi: 10.3389/fpls.2024.1308417.
   PubMed Web of Science ®Google Scholar
• Jiang J, Zeng L, Ke H, et al. Orthogonal regulation of phytochrome B abundance by stress-specific plastidial retrograde signaling metabolite. Nat Commun. 2019;10(1):2904. doi: 10.1038/s41467-019-10867-w.
   PubMedGoogle Scholar
• Pu X, Dong X, Li Q, et al. An update on the function and regulation of methylerythritol phosphate and mevalonate pathways and their evolutionary dynamics. J Integr Plant Biol. 2021;63(7):1211–1226. doi: 10.1111/jipb.13076.
   PubMed Web of Science ®Google Scholar
• Rico J, Pardo E, Orejas M. Enhanced production of a plant monoterpene by overexpression of the 3-hydroxy-3-methylglutaryl coenzyme A reductase catalytic domain in Saccharomyces cerevisiae. Appl Environ Microbiol. 2010;76(19):6449–6454. doi: 10.1128/AEM.02987-09.
   PubMed Web of Science ®Google Scholar
• Korth KL, Stermer BA, Bhattacharyya MK, et al. HMG-CoA reductase gene families that differentially accumulate transcripts in potato tubers are developmentally expressed in floral tissues. Plant Mol Biol. 1997;33(3):545–551. doi: 10.1023/A:1005743011651.
   PubMed Web of Science ®Google Scholar
• Suzuki M, Kamide Y, Nagata N, et al. Loss of function of 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 (HMG1) in Arabidopsis leads to dwarfing, early senescence and male sterility, and reduced sterol levels. Plant J. 2004;37(5):750–761. doi: 10.1111/j.1365-313X.2004.02003.x.
   PubMed Web of Science ®Google Scholar
• Jadaun JS, Sangwan NS, Narnoliya LK, et al. Over-expression of DXS gene enhances terpenoidal secondary metabolite accumulation in rose-scented geranium and Withania somnifera: active involvement of plastid isoprenogenic pathway in their biosynthesis. Physiol Plant. 2017;159(4):381–400. doi: 10.1111/ppl.12507.
   PubMed Web of Science ®Google Scholar
• Lois LM, Rodríguez-Concepción M, Gallego F, et al. Carotenoid biosynthesis during tomato fruit development: regulatory role of 1-deoxy-D-xylulose 5-phosphate synthase. Plant J. 2000;22(6):503–513. doi: 10.1046/j.1365-313x.2000.00764.x.
   PubMed Web of Science ®Google Scholar
• Lv X, Gu J, Wang F, et al. Combinatorial pathway optimization in Escherichia coli by directed co-evolution of rate-limiting enzymes and modular pathway engineering. Biotechnol Bioeng. 2016;113(12):2661–2669. doi: 10.1002/bit.26034.
   PubMed Web of Science ®Google Scholar
• Yin X, Yan X, Qian C, et al. Comparative transcriptome analysis to identify genes involved in terpenoid biosynthesis in Agriophyllum squarrosum, a folk medicinal herb native to Asian temperature deserts. Plant Biotechnol Rep. 2021;15(3):369–387. doi: 10.1007/s11816-021-00674-5.
   Web of Science ®Google Scholar
• Degenhardt J, Gershenzon J, Baldwin IT, et al. Attracting friends to feast on foes: engineering terpene emission to make crop plants more attractive to herbivore enemies. Curr Opin Biotechnol. 2003;14(2):169–176. doi: 10.1016/S0958-1669(03)00025-9.
   PubMed Web of Science ®Google Scholar
• Wu S, Schalk M, Clark A, et al. Redirection of cytosolic or plastidic isoprenoid precursors elevates terpene production in plants. Nat Biotechnol. 2006;24(11):1441–1447. doi: 10.1038/NBT1251.
   PubMed Web of Science ®Google Scholar
• Pesaresi P, Masiero S, Eubel H, et al. Nuclear photosynthetic gene expression is synergistically modulated by rates of protein synthesis in chloroplasts and mitochondria. Plant Cell. 2006;18(4):970–991. doi: 10.1105/tpc.105.039073.
   PubMed Web of Science ®Google Scholar
• Woodson JD, Chory J. Coordination of gene expression between organellar and nuclear genomes. Nat Rev Genet. 2008;9(5):383–395. doi: 10.1038/nrg2348.
   PubMed Web of Science ®Google Scholar
• Chi W, Sun X, Zhang L. Intracellular signaling from plastid to nucleus. Annu Rev Plant Biol. 2013;64(1):559–582. doi: 10.1146/annurev-arplant-050312-120147.
   PubMedGoogle Scholar
• Zheng X, Li P, Lu X. Research advances in cytochrome P450-catalysed pharmaceutical terpenoid biosynthesis in plants. J Exp Bot. 2019;70(18):4619–4630. doi: 10.1093/jxb/erz203.
   PubMed Web of Science ®Google Scholar
• Chaudhuri A, Halder K, Abdin MZ, et al. Abiotic stress tolerance in plants: brassinosteroids navigate competently. Int J Mol Sci. 2022;23(23):14577. doi: 10.3390/ijms23231457711.
   PubMed Web of Science ®Google Scholar
• Han C, Wang L, Lyu J, et al. Brassinosteroid signaling and molecular crosstalk with nutrients in plants. J Genet Genomics. 2023;50(8):541–553. doi: 10.1016/j.jgg.2023.03.004.
   PubMed Web of Science ®Google Scholar
• Nakamura A, Fujioka S, Sunohara H, et al. The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice. Plant Physiol. 2006;140(2):580–590. doi: 10.1104/pp.105.072330.
   PubMed Web of Science ®Google Scholar
• Irani NG, Di Rubbo S, Mylle E, et al. Fluorescent castasterone reveals BRI1 signaling from the plasma membrane. Nat Chem Biol. 2012;8(6):583–589. doi: 10.1038/nchembio.958.
   PubMed Web of Science ®Google Scholar
• Rana S, Hardtke CS. Plant biology: brassinosteroids and the intracellular auxin shuttle. Curr Biol. 2020;30(9):R407–R409. doi: 10.1016/j.cub.2020.02.073.
   PubMed Web of Science ®Google Scholar