231
Views
2
CrossRef citations to date
0
Altmetric
Biology and Ecology

Intra and intergeneric transferable gene-derived orthologous microsatellite markers in Eucalyptus and Corymbia species

, &
Pages 65-68 | Received 31 Mar 2016, Accepted 12 Oct 2016, Published online: 16 Jan 2017

References

  • Acuna CV, Fernandez P, Villalba PV, García MN, Hopp E, Poltri SNM. 2012. Discovery, validation, and in silico functional characterization of EST-SSR markers in Eucalyptus globulus. Tree Genet Genomes. 8:289–301.
  • Faria DA, Mamani EMC, Pappas MR, Pappas Jr GJ, Grattapaglia D. 2010. A selected set of EST-derived microsatellites, polymorphic and transferable across 6 species of Eucalyptus. J Hered. 101:512–520.
  • Grattapaglia D, Mamani E, Silva‐Junior OB, Faria DA. 2015. A novel genome‐wide microsatellite resource for species of Eucalyptus with linkage‐to‐physical correspondence on the reference genome sequence. Mol Ecol Resour. 15:437–448.
  • Hendre PS, Kamalakannan R, Varghese M. 2012. High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform. Plant Biotech J. 10:646–656.
  • Huang X, Madan A. 1999. CAP3: a DNA sequence assembly program. Genome Res. 9:868–877.
  • Jones M, Stokoe R, Cross M, Scott L, Maguire T, Shepherd M. 2001. Isolation of microsatellite loci from spotted gum (Corymbia variegata) and cross species amplification in Corymbia and Eucalyptus. Mol Ecol Notes. 1:276–278.
  • Kalinowski ST, Taper ML, Marshall TC. 2007. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol. 16:1099–1106.
  • Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, et al. 2014. The genome of Eucalyptus grandis. Nature. 510:356–362.
  • Rossetto M. 2001. Sourcing of SSR markers from related plant species. In: Henry RJ, editor. Plant genotyping: the DNA fingerprinting of plants. Wallingford (UK): CAB International; p. 211–224.
  • Rousset F. 2008. GENEPOP’007: a complete reimplementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour. 8:103–106.
  • Sablok G, Perez-Pulido AJ, Do T, Seong TY, Casimiro-Soriguer CS, La Porta N, Ralph PJ, Squartini A, Munoz-Merida A, Harikrishna JA. 2016. PlantFuncSSR: integrating first and next generation transcriptomics for mining of SSR-functional domains markers. Front Plant Sci. 7:878.
  • Schuelke M. 2000. An economic method for the fluorescent labelling of PCR fragments. Nature Biotechnol. 18:233–234.
  • Shepherd M, Kasem S, Lee D, Henry R. 2006. Construction of microsatellite linkage maps for Corymbia. Silvae Genet. 55:228–238.
  • Silva JM, Souza ACB, Souza AP, Mori ES, Freitas MLM, Sebbenn AM, Moraes MLT. 2009. Development and characterization of 14 microsatellite loci from enriched genomic library of Eucalyptus camaldulensis Dehnh. Con Genet Resour. 1:465–469.
  • Sumathi M, Yasodha R. 2014. Microsatellite resources of Eucalyptus: current status and future perspectives. Bot Stud. 55:73.
  • Varshney RK, Graner A, Sorrels M. 2005. Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 1:48–55.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.