81
Views
2
CrossRef citations to date
0
Altmetric
Silviculture and Plant Sciences

New polymorphic microsatellite markers for Sarcandra glabra (Chloranthaceae), an evergreen broad-leaved shrub endangered in South Korea

, , , ORCID Icon, , & show all
Pages 364-368 | Received 30 Apr 2020, Accepted 11 Jun 2020, Published online: 22 Jun 2020

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinf. 30(15):2114–2120. doi:10.1093/bioinformatics/btu170.
  • Chinese Pharmacopoeia Commission. 2010. Pharmacopoeia of People’s Republic of China. Beijing: China Medical Science Press; p. 207.
  • Chybicki IJ, Burczyk J. 2009. Simultaneous estimation of null alleles and inbreeding coefficients. J Hered. 100(1):106–113. doi:10.1093/jhered/esn088.
  • Cui J, Ke L, Zhang C, Zhou J, Xu X. 2014. Foliar nutrient characteristics of main tree species in shrub layer under subtropical evergreen broad-leaved forest in Southern Anhui. J Plant Resour Environ. 23(2):34–40.
  • Dudash MR, Carr DE. 1998. Genetics underlying inbreeding depression in Mimulus with contrasting mating systems. Nature. 393(6686):682–684. doi:10.1038/31468.
  • Feild TS, Arens NC, Doyle JA, Dawson TE, Donoghue MJ. 2004. Dark and disturbed: a new image of early angiosperm ecology. Paleobiology. 30(1):82–107. doi:10.1666/0094-8373(2004)030<0082:DADANI>2.0.CO;2.
  • Gibson SY, Van der Marel RC, Starzomski BM. 2009. Climate change and conservation of leading‐edge peripheral populations. Conserv Biol. 23(6):1369–1373. doi:10.1111/j.1523-1739.2009.01375.x.
  • He RR, Yao XS, Li HY, Dai Y, Duan YH, Li YF, Kurihara H. 2009. The anti-stress effects of Sarcandra glabra extract on restraint-evoked immunocompromise. Biol Pharm Bull. 32(2):247–252. doi:10.1248/bpb.32.247.
  • Hong YS, Kim EJ, Lee EP, Lee SY, Cho K, Lee YK, Chung SH, Jeong HM, You YH. 2019. Characteristics of vegetation succession on the Pinus thunbergii forests in warm temperate regions, Jeju Island, South Korea. J Ecol Environ. 43(1):1–16.
  • Kamvar ZN, Tabima JF, Grünwald NJ. 2014. Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction. PeerJ. 2:e281. doi:10.7717/peerj.281.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinf. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199
  • Kim CS, Son SG, Tho JH, Kim JE, Hwang SI, Cheong JH. 2007. Distribution characteristics of woody plants resources in Jeju, Korea. Korean J Plant Res. 20(5):424–436.
  • Krussmann G. 1984. Manual of cultivated broad-leaved trees and shrubs. Portland: Timber Press.
  • Miller MP, Knaus BJ, Mullins TD, Haig SM. 2013. SSR_pipeline: A bioinformatics infrastructure for identifying microsatellites from paired-end illumina high-throughput DNA sequencing data. J Hered. 104:881–885. doi:10.1093/jhered/est056.
  • Ministry of the Environment of Korea. 2012. Korean red list of threatened species. Incheon:National Institute of Biological Resources.
  • Peakall ROD, Smouse PE. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes. 6(1):288–295. doi:10.1111/j.1471-8286.2005.01155.x.
  • Rousset F. 2008. GENEPOP’007: A complete reimplementation of the genepop software for Windows and Linux. Mol Ecol Resour. 8:103–106. doi:10.1111/j.1471-8286.2007.01931.x.
  • Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors Bioinformatics methods and protocols: methods in molecular biology. Totowa: Humana Press, p. 365–386. https://sourceforge.net/projects/primer3/
  • Safriel UN, Volis S, Kark S. 1994. Core and peripheral populations and global climate change. Isr J Plant Sci. 42(4):331–345. doi:10.1080/07929978.1994.10676584.
  • Shaolin P, Furong L, Ting Z, Leifu C, Baoming C, Hua P. 2008. Special ecological effects of ravines in Danxia landform, China. Acta Ecologica Sinica. 28(7):2947–2953. doi:10.1016/S1872-2032(08)60063-3.
  • Song GP, Jang CG, Kang SH. 2012. Conservation and vegetation structure of Euchresta japonica (Leguminosae) in Jeju Island. Korean J Plant Res. 25(1):89–95. doi:10.7732/kjpr.2012.25.1.089.
  • Xia N, Jérémie J. 1999. Chloranthaceae. In: Editorial Committee editor. Flora of China. Vol. 4, Beijing: Science Press. p. 132–138.
  • Xu Y, Wei GY, Zhou Y, Huang XF, Xu YQ. 2015. A set of novel microsatellite markers developed for a traditional Chinese medicinal plant, Sarcandra glabra (Chloranthaceae). J Genet. 94:86–88. doi:10.1007/s12041-014-0390-z.
  • Zhou H, Liang J, Lv D, Hu Y, Zhu Y, Si J, Wu S. 2013. Characterization of phenolics of Sarcandra glabra by non-targeted high-performance liquid chromatography fingerprinting and following targeted electrospray ionisation tandem mass spectrometry/time-of-flight mass spectrometry analyses. Food Chem. 138(4):2390–2398. doi:10.1016/j.foodchem.2012.12.027.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.