Identification of transcriptional biomarkers induced by SERMS in human endometrial cells using multivariate analysis of DNA microarrays

References

• ALIZADEH, A. A., EISEN, M. B., DAVIS, R. E., MA, C., Lossos, I. S., ROSENWALD, A., BoinmcK, J. C., SABET, H., TRAN, T, Yu, X., POWELL, J. I., YANG, L, MARTI, G. E., MOORE, T., HUDSON, J. JR, Lu, L., LEWIS, D. B., TIBSHIRANI, R., SHERLOCK, G., CH, W. C., GREINER, T. C., WEISENBURGER, D. D., ARMITAGE, J. 0., WARNKE, R., LEVY, R, WILSON, W., GREVER, M. R., Bymp, J. C., BOTSTEIN, D., BROWN, P.O. and STAUDT, L M. 2000, Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature, 403, 503–511.
   Google Scholar
• BEcxvvrrii-HALL, B. M., BRINDLE, J. T., BARTON, R. H., COEN, M., Houvins, E., NICHOLSON, J. K. and ANTIT, H. 2002, Application of orthogonal signal correction to minimise the effects of physical and biological variation in high resolution 1H NMR spectra of biofluids. Analyst, 127, 1283–1288.
   Google Scholar
• BERTUCCI, F., HOUI-GATFE, R., BENZIANE, A., GRANJEAUD, S., ADELAIDE, J., TAGETT, R, LORIOD, B., JACQUEMIER, J., VIENS, P., JORDAN, B., BIRNBAUM, D. and NGUYEN, C. 2000, Gene expression profiling of primary breast carcinomas using arrays of candidate genes. Human Molecular Genetics, 9, 2981–2991.
   Google Scholar
• BOZDOGAN, 0., ATASOY, P., EREKUL, S., BOZDOGAN, N. and BAYRAM, M. 2002, Apoptosis-related proteins and steroid hormone receptors in normal, hyperplastic, and neoplastic endometrium. International Journal of Gynecology and Pathology, 21, 375–382.
   Google Scholar
• BRYS, M., SEMCZUK, A., BARANOWSKI, W, JAKOWICKI, J. and KRAJEWSKA, W. M. 2002, Androgen receptor (AR) expression in normal and cancerous human endometrial tissues detected by RT-PCR and immunohistochemistry. Anticancer Research, 22, 1025–1031.
   PubMed Web of Science ®Google Scholar
• BURCZYNSKI, M. E., MCMILLIAN, M., CIERVO, J., Li, L., PARKER, J. B., DUNN, R T. II, HICKEN, S., FAR, S. and JOHNSON, M. D. 2000, Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells. Toxicology Science, 58, 399–415.
   Google Scholar
• COTELINGAM, J. D., WrrEnsxy, F. G., Hsu, S. M., BLAESE, R M. and JAFFE, E. S. 1985, Malignant lymphoma in patients with the Wiskott—Aldrich syndrome. Cancer Investigation, 13, 515–522.
   Google Scholar
• CUNNINGHAM, M. J., LIANG, S., FUHRMAN, S., SEILIIAMER, J. J. and SOMOGYI, R 2000, Gene expression microarray data analysis for toxicology profiling. Annals of the New York Academy of Sciences, 919, 52–67.
   Google Scholar
• ERIKSSON, L., JOHANSSON, E., KErrANEH-Woin, N. and WOED, S. 1999, Introduction to Multi- and Megavariate Data Analysis Using Projection Methods (PCA & PLS) (Umea: Umetrics).
   Google Scholar
• FERRANDINA, G., LEGGE, F., RANELLETTI, F. 0., ZANNONI, G. F., MAGGIANO, N., EVANGELISTI, A., MANCUSO, S., SCAMBIA, G. and LAURIOLA, L. 2002, Cyclooxygenase-2 expression in endometrial carcinoma: correlation with clinicopathologic parameters and clinical outcome. Cancer, 95, 801–807.
   Google Scholar
• GAVAGHAN, C. L, WILSON, I. D. and NICHOLSON, J. K. 2002, Physiological variation in metabolic phenotyping and functional genomic studies: use of orthogonal signal correction and PLS-DA. FEBS Letters, 530, 191–196.
   PubMed Web of Science ®Google Scholar
• GERtioup, D., Lu, M., Xu, J., AusTiN, C., CASKEY, C. T. and RUSHMORE, T. 2001, Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays. Physiology and Genomics, 5, 161–170.
   PubMed Web of Science ®Google Scholar
• GOLDENBERG, D., AYESH, S., SCHNEIDER, T., PAPPO, 0., JURINI, 0., Em, A., FELLIG, Y, DADoN, T., ARIEL, I., DE GROOT, N., HOCHBERG, A. and GALUN, E. 2002, Analysis of differentially expressed genes in hepatocellular carcinoma using cDNA arrays. Molecular Carcinogenesis, 33, 113–124.
   Google Scholar
• HAVIV, I. and CAMPBELL, I. G. 2002, DNA microarrays for assessing ovarian cancer gene expression. Molecular and Cellular Endocrinology, 191, 121–126.
   PubMed Web of Science ®Google Scholar
• IACOBTJZIO-DONAHTJE, C. A., MAITRA, A., SHEN-ONG, G. L., VAN HEEK, T., ASHFAQ, R., MEYER, R., WALTER, K, BERG, K, HOLLINGSWORTH, M. A., CAMERON, J. L., YEO, C. J., KERN, S. E., GOGGINS, M. and HRUBAN, R. H. 2002, Discovery of novel tumor markers of pancreatic cancer using global gene expression technology. American Journal of Pathology, 160, 1239–1249.
   Google Scholar
• LANDEN, C. N. JR, MATHUR, S. P., RICHARDSON, M. S. and CREASMAN, W. T. 2003, Expression of cyclooxygenase-2 in cervical, endometrial, and ovarian malignancies. American Journal of Obstetrics and Gynecology, 188, 1174–1176.
   Google Scholar
• Luo, J. H., Yu, Y. P., CIEPLY, K, LIN, F., DEFLAVIA, P., DHI RR, FINKELSTEIN, S., MICHALOPOULOS, G. and BECICH, M. 2002, Gene expression analysis of prostate cancers. Molecular Carcinogenesis, 33, 25–35.
   PubMed Web of Science ®Google Scholar
• LUYPAERT, J., HEUERDING, S., DE JONG, S. and MASSART, D. L. 2002, An evaluation of direct orthogonal signal correction and other preprocessing methods for the classification of clinical study lots of a dermatological cream. Journal of Pharmacological and Biomedkal Analysis, 30, 453–466.
   PubMed Web of Science ®Google Scholar
• MODEL, L. M. 1977, Primary reticulum cell sarcoma of the brain in Wiskott—Aldrich syndrome. Report of a case. Archives in Neurology, 34, 633–635.
   PubMed Web of Science ®Google Scholar
• MUTTER, G. L., BAAK, J. P., FrrzonRALD, J. T, GRAY, R., NEUBERG, D., KUST, G. A., GENTLEMAN, R., GULLANS, S. R, WET, L. J. and WiLcox, M. 2001, Global expression changes of constitutive and hormonally regulated genes during endometrial neoplastic transformation. Gynecology and Oncology, 83, 177–185.
   PubMed Web of Science ®Google Scholar
• PEROU, C. M., SORLIE, T, EISEN, M. B., VAN DE RUN, M., JEFFREY, S. S., REES, C. A., P011-ACK, J. R., Ross, D. T, JOHNSEN, H., AKSLEN, L. A., FLUGE, 0., PERGAMENSCHIKOV, A., WILLIAMS, C., ZHU, S. X., LONNING, P. E., BORRESEN-DALE, A. L, BROWN, P. 0. and BOTSTEIN, D. 2000, Molecular portraits of human breast tumours. Nature, 406, 747–752.
   Google Scholar
• SATYASWAROOP, P. G., BRESSLER, R S., DE LA PENA, M. M. and GTJRPID EE. 1979, Isolation and culture of human endometrial glands. Journal of Clinical Endocrinology and Metabolism, 48, 639–641.
   PubMed Web of Science ®Google Scholar
• SCHERF, U., Ross, D. T., WALTHAM, M., Sivirru, L H., LEE, J. K, TANABE, L., KoHN, K. W, REINHOLD, W. C., MYERS, T. G., ANDREWS, D. T., SCTJDIERO, D. A., EISEN, M. B., SATJSVILI-E, E. A., POMMIER, Y, BoTsTEIN, D., BROWN, P. 0. and WEINSTEIN, J. N. 2000, A gene expression database for the molecular pharmacology of cancer. Nature Genetics, 24, 236–244.
   Google Scholar
• SCHUTZE, N., KRAFT, V., DEERBERG, F., WINKING, H., MEITINGER, D., EBERT, K, KNTJPPEN, R and VOLLMER, G. 1992, Functions of estrogens and anti-estrogens in the rat endometrial adenocarcinoma cell lines. International Journal of Cancer, 52, 941–949.
   Google Scholar
• SHCHERBINA, A., CANDOTTI, F., ROSEN, F. S. and REMOLD-O'DONNELL E. 2003, High incidence of lymphomas in a subgroup of Wiskott—Aldrich syndrome patients. British Journal of Haematology, 121, 529–530.
   Google Scholar
• TONG, B. J., TAN, J., TAJEDA, L, DAS, S. K., CHAPMAN, J. A., DuBois, R N. and DEY, S. K 2000, Heightened expression of cyclooxygenase-2 and peroxisome proliferator-activated receptor-delta in human endometrial adenocarcinoma. Neoplasia, 2, 483–490.
   PubMed Web of Science ®Google Scholar
• WARING, J. F., CIURLIONIS, R, JOLLY, R. A., HEINDEL, M. and ULRICH, R G. 2001, Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity. Toxicology Letters, 120, 359–368.
   PubMed Web of Science ®Google Scholar
• WOLD, S., DTJNN, ALBANO C., EDLIJND, W. J., ESBENSEN, U., GELADI, K, HELI-BERG, P., JOHANSSON, S., LINDBERG, E. and SJOSTROM., W. 1984, Multivariate data analysis in chemistry. In Chemo-metrics: Mathematics and Statistics in Chemistry, edited by B. R. Kowalski (Dordrecht: D. Reidel).
   Google Scholar