Exploring and optimising the conditions for virus-induced gene silencing in an ornamental tobacco, Nicotiana alata

References

• Arnon, D.I. (1949). Copper enzymes in isolated chloroplasts. Polyphenoloxidase in Beta vulgaris. Plant Physiology, 24, 1–15. doi:10.1104/pp.24.1.1
   PubMed Web of Science ®Google Scholar
• Brigneti, G., Martin-Hernandez, A.M., Jin, H., Chen, J., Baulcombe, D.C., Baker, B., & Jones, J.D. (2004). Virus-induced gene silencing in Solanum species. The Plant Journal : for Cell and Molecular Biology, 39, 264–272. doi:10.1111/j.1365-313X.2004.02122.x
   PubMed Web of Science ®Google Scholar
• Broderick, S.R., & Jones, M.L. (2014). An optimized protocol to increase virus-induced gene silencing efficiency and minimize viral symptoms in petunia. Plant Molecular Biology Reporter, 32, 219–233. doi:10.1007/s11105-013-0647-3
   PubMed Web of Science ®Google Scholar
• Burch-Smith, T.M. (2006). Efficient virus-induced gene silencing in Arabidopsis. Plant Physiology, 142, 21–27. doi:10.1104/pp.106.084624
   PubMed Web of Science ®Google Scholar
• Chung, E., Seong, E., Kim, Y.-C., Chung, E.J., Oh, S.-K., Lee, S., … Choi, D. (2004). A method of high frequency virus-induced gene silencing in chili pepper (Capsicum annuum L. cv. Bukang). Molecules and Cells, 17, 377–380.
   PubMed Web of Science ®Google Scholar
• Fu, D.-Q., Zhu, B.-Z., Zhu, H.-L., Zhang, H.-X., Xie, Y.-H., Jiang, W.-B., … Luo, Y.-B. (2005). Enhancement of virus-induced gene silencing in tomato by low temperature and low humidity. Molecular Cell. 21, 153–160. Retrieved from http://www.molcells.org/journal/view.html?year=2006&volume=21&number=1&spage=153
   Google Scholar
• Ghoshal, B., & Sanfaçon, H. (2014). Temperature-dependent symptom recovery in Nicotiana benthamiana plants infected with tomato ringspot virus is associated with reduced translation of viral RNA2 and requires ARGONAUTE 1. Virology, 456–457, 188–197. doi:10.1016/j.virol.2014.03.026
   PubMed Web of Science ®Google Scholar
• Hartl, M., Merker, H., Schmidt, D.D., & Baldwin, I.T. (2008). Optimized virus-induced gene silencing in Solanum nigrum reveals the defensive function of leucine aminopeptidase against herbivores and the shortcomings of empty vector controls. New Phytologist, 179, 356–365. doi:10.1111/j.1469-8137.2008.02479.x
   PubMed Web of Science ®Google Scholar
• Hsieh, M.H., Lu, H.C., Pan, Z.J., Yeh, H.H., Wang, S.S., Chen, W.H., & Chen, H.H. (2013). Optimizing virus-induced gene silencing efficiency with Cymbidium mosaic virus in Phalaenopsis flower. Plant Science, 201–202, 25–41. doi:10.1016/j.plantsci.2012.11.003
   PubMed Web of Science ®Google Scholar
• Just, B.J., Santos, C.A.F., Fonseca, M.E.N., Boiteux, L.S., Oloizia, B.B., & Simon, P.W. (2007). Carotenoid biosynthesis structural genes in carrot (Daucus carota): Isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping. Theoretical and Applied Genetics, 114, 693–704. doi:10.1007/s00122-006-0469-x
   PubMed Web of Science ®Google Scholar
• Khandan-Mirkohi, A., & Schenk, M.K. (2009). Characteristics of phosphorus uptake kinetics of poinsettia and marigold. Scientia Horticulturae, 122, 251–257. doi:10.1016/j.scienta.2009.05.009
   Web of Science ®Google Scholar
• Ku, H.-M., Hu, -C.-C., Chang, H.-J., Lin, Y.-T., Jan, F.-J., & Chen, C.-T. (2011). Analysis by virus induced gene silencing of the expression of two proline biosynthetic pathway genes in Nicotiana benthamiana under stress conditions. Plant Physiology and Biochemistry, 49, 1147–1154. doi:10.1016/j.plaphy.2011.07.003
   PubMed Web of Science ®Google Scholar
• Laskowska, D., Doroszewska, T., Depta, A., Kursa, K., Olszak-Przybyś, H., & Czubacka, A. (2013). A survey of Nicotiana germplasm for resistance to Tomato spotted wilt virus (TSWV). Euphytica, 193, 207–219. doi:10.1007/s10681-013-0921-3
   Web of Science ®Google Scholar
• Liao, J., Dai, J., Kang, H., Liao, K., Ma, W., Wang, J., & Chen, S. (2016). Plasticity in the self-incompatibility system of cultivated Nicotiana alata. Euphytica, 208, 129–141. doi:10.1007/s10681-015-1606-x
   Web of Science ®Google Scholar
• Lichtenthaler, H.K., & Buschmann, C. (2001). Chlorophylls and carotenoids: Measurement and characterization by UV-VIS spectroscopy. In Current protocols in food analytical chemistry (pp. F4.3.1-F4.3.8). Hoboken, NJ: John Wiley & Sons. doi:10.1002/0471142913.faf0403s01
   Google Scholar
• Liu, Y., Schiff, M., & Dinesh-Kumar, S. P. (2002). Virus-induced gene silencing in tomato. The Plant Journal, 31(6),777–786. https://doi.org/10.1046/j.1365-313X.2002.01394.x
   PubMed Web of Science ®Google Scholar
• Ma, X., Nicole, M.-C., Meteignier, L.-V., Hong, N., Wang, G., & Moffett, P. (2015). Different roles for RNA silencing and RNA processing components in virus recovery and virus-induced gene silencing in plants. Journal of Experimental Botany, 66, 919–932. doi:10.1093/jxb/eru447
   PubMed Web of Science ®Google Scholar
• Narula, A., Kumar, S., Bansal, K.C., & Srivastava, P.S. (2005). Biotechnological approaches towards improvement of medicinal plants. In Plant biotechnology and molecular markers (pp. 78–116). Dordrecht: Kluwer Academic. doi:10.1007/1-4020-3213-7_6
   Google Scholar
• Ratcliff, F., Martin-Hernandez, A.M., & Baulcombe, D.C. (2001). Technical advance. Tobacco rattle virus as a vector for analysis of gene function by silencing. The Plant Journal : for Cell and Molecular Biology, 25, 237–245. doi:10.1046/j.0960-7412.2000.00942.x
   PubMed Web of Science ®Google Scholar
• Ryu, C.M., Anand, A., Kang, L., & Mysore, K.S. (2004). Agrodrench: A novel and effective agroinoculation method for virus-induced gene silencing in roots and diverse Solanaceous species. Plant Journal, 40, 322–331. doi:10.1111/j.1365-313X.2004.02211.x
   PubMed Web of Science ®Google Scholar
• Senthil-Kumar, M., Hema, R., Anand, A., Kang, L., Udayakumar, M., & Mysore, K.S. (2007). A systematic study to determine the extent of gene silencing in Nicotiana benthamiana and other Solanaceae species when heterologous gene sequences are used for virus-induced gene silencing. New Phytologist, 176, 782–791. doi:10.1111/j.1469-8137.2007.02225.x
   PubMed Web of Science ®Google Scholar
• Senthil-Kumar, M., & Mysore, K.S. (2011). New dimensions for VIGS in plant functional genomics. Trends in Plant Science, 16, 656–665. doi:10.1016/j.tplants.2011.08.006
   PubMed Web of Science ®Google Scholar
• Shibata, Y., Kawakita, K., & Takemoto, D. (2010). Age-related resistance of Nicotiana benthamiana against hemibiotrophic pathogen Phytophthora infestans Requires both ethylene- and salicylic acid–mediated signaling pathways. Molecular Plant-Microbe Interactions, 23, 1130–1142. doi:10.1094/MPMI-23-9-1130
   PubMed Web of Science ®Google Scholar
• Smith, H.H. (1937). The relation between genes affecting size and color i n certain species of nicotiana1. Genetics, 22, 361.
   PubMedGoogle Scholar
• Stratmann, J.W., & Hind, S.R. (2011). Gene silencing goes viral and uncovers the private life of plants. Entomologia Experimentalis Et Applicata, 140, 91–102. doi:10.1111/j.1570-7458.2011.01147.x
   Web of Science ®Google Scholar
• Sung, Y.-C., Lin, C.-P., & Chen, J.-C. (2014). Optimization of virus-induced gene silencing in Catharanthus roseus. Plant Pathology, 63, 1159–1167. doi:10.1111/ppa.12186
   Web of Science ®Google Scholar
• Velásquez, A.C., Chakravarthy, S., & Martin, G.B. (2009). Virus-induced gene silencing (VIGS) in Nicotiana benthamiana and tomato. Journal of Visualized Experiments : JoVE, 20–23. doi:10.3791/1292
   Google Scholar
• Wang, M., Wang, G., Ji, J., & Wang, J. (2009). The effect of pds gene silencing on chloroplast pigment composition, thylakoid membrane structure and photosynthesis efficiency in tobacco plants. Plant Science, 177, 222–226. doi:10.1016/j.plantsci.2009.04.006
   Web of Science ®Google Scholar
• Wang, X.G., Zhu, H.L., Shao, Y., Chen, A.J., Ma, Y.Z., Luo, Y.B., & Zhu, B.Z. (2010). Analysis of gene functions by a syringe infiltration method of VIGS. Russian Journal of Plant Physiology, 57, 590–597. doi:10.1134/S1021443710040199
   Web of Science ®Google Scholar
• Yamagishi, N., & Yoshikawa, N. (2010). Virus-induced gene silencing as a tool for analysis of gene functions in plants. Uirusu, 60, 155–162. doi:10.2222/jsv.60.155
   PubMedGoogle Scholar
• Zhang, X., Zhang, X., Singh, J., Li, D., & Qu, F. (2012). Temperature-dependent survival of Turnip crinkle virus-infected arabidopsis plants relies on an RNA silencing-based defense that requires dcl2, AGO2, and HEN1. Journal of Virology, 86, 6847–6854. doi:10.1128/JVI.00497-12
   PubMed Web of Science ®Google Scholar
• Zhong, X., Yuan, X., Wu, Z., Khan, M.A., Chen, J., Li, X., … Yi, M. (2014). Virus-induced gene silencing for comparative functional studies in Gladiolus hybridus. Plant Cell Reports, 33, 301–312. doi:10.1007/s00299-013-1530-2
   PubMed Web of Science ®Google Scholar