Differential expression of the ascorbate oxidase multigene family of Camellia sinensis in response to stress

References

• Altschul, S.F., Madden, T.L., Schafferi, A.A., Zhang, J., Zhang, Z., Miller, W., & Lipman, D.J. (1997). BLAST and PSI–BLAST: A new generation of protein database search programs. Nucleic Acids Research, 25, 3389–3402.
   PubMed Web of Science ®Google Scholar
• Bailey, T.L., Boden, M., Buske, F.A., Frith, M., Grant, C.E., Clementi, L., … Noble, W.S. (2009). MEME SUITE: Tools for motif discovery and searching. Nucleic Acids Research, 37, 202–208.
   PubMed Web of Science ®Google Scholar
• Batth, R., Singh, K., Kumari, S., & Mustafiz, A. (2017). Transcript profiling reveals the presence of abiotic stress and developmental stage specific ascorbate oxidase genes in plants. Frontiers in Plant Science, 8, 198.
   PubMed Web of Science ®Google Scholar
• Bento, I., Martins, L.O., Lopes, G.G., Carrondo, M.A., & Lindley, P.F. (2005). Dioxygen reduction by multi–Copper oxidases; a structural perspective. Dalton Transactions, 21, 3507–3513.
   PubMed Web of Science ®Google Scholar
• Calafiore, R., Ruggieri, V., Raiola, A., Rigano, M.M., Sacco, A., Hassan, M.I., … Barone, A. (2016). Exploiting genomics resources to identify candidate genes underlying antioxidants content in tomato fruit. Frontiers in Plant Science, 2016, 397.
   Google Scholar
• Emanuelsson, O., Brunak, S., Von Heijne, G., & Nielsen, H. (2007). Locating proteins in the cell using TargetP, SignalP and related tools. Nature Protocols, 2, 953–971.
   PubMed Web of Science ®Google Scholar
• Finn, R.D., Coggill, P., Eberhardt, R.Y., Eddy, S.R., Mistry, J., Mitchell, A.L., … Bateman, A. (2016). The Pfam protein families database: Towards a more sustainable future. Nucleic Acids Research, 44, 279–285.
   PubMed Web of Science ®Google Scholar
• Gohain, B., Bandyopadhyay, T., Borchetia, S., Bharalee, R., Gupta, S., Bhorali, P., … Das, S. (2011). Identification and validation of stable reference genes in Camellia species. Journal of Biotechnology and Pharmaceutical Research, 2, 9–18.
   Google Scholar
• Horton, P., Park, K.J., Obayashi, T., Fujita, N., Harada, H., Adams-Collier, C.J., & Nakai, K. (2007). WoLFPSORT: Protein localization predictor. Nucleic Acids Research, 35, 585–587.
   PubMed Web of Science ®Google Scholar
• Hunter, S., Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Binns, D., … Yeats, C. (2009). InterPro: The integrative protein signature database. Nucleic Acids Research, 37, 211–215.
   PubMed Web of Science ®Google Scholar
• Johnson, M., Zaretskaya, I., Raytselis, Y., Merezhuk, Y., McGinnis, S., & Madden, T.L. (2008). NCBI BLAST: A better web interface. Nucleic Acids Research, 36, 5–9.
   PubMed Web of Science ®Google Scholar
• Letunic, I., Doerks, T., & Bork, P. (2012). SMART 7: Recent updates to the protein domain annotation resource. Nucleic Acids Research, 40, 302–305.
   PubMed Web of Science ®Google Scholar
• Li, X.W., Feng, Z.G., Yang, H.M., Zhu, X.P., Liu, J., & Yuan, H.Y. (2010). A novel cold–Regulated gene from Camellia sinensis, CsCOR1, enhances salt– And dehydration–Tolerance in tobacco. Biochemical and Biophysical Research Communications, 394, 354–359.
   PubMed Web of Science ®Google Scholar
• Livak, K.J., & Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods, 25, 402–408.
   PubMed Web of Science ®Google Scholar
• Maroufi, A., Van Bockstaele, E., & De Loose, M. (2010). Validation of reference genes for gene expression analysis in chicory (Cichoriumintybus) using quantitative real-time PCR. BMC Molecular Biology, 11, 15.
   PubMed Web of Science ®Google Scholar
• Pan, C., Tian, K., Ban, Q., Wang, L., Sun, Q., He, Y., … Jiang, C. (2017). Genome-wide analysis of the biosynthesis and deactivation of gibberellin-dioxygenases gene family in Camellia sinensis (L.) O. Kuntze. Genes, 8, 235.
   Web of Science ®Google Scholar
• Pignocchi, C., Fletcher, J.M., Wilkinson, J.E., Barnes, J.D., & Foyer, C.H. (2003). The function of ascorbate oxidase in tobacco. Plant Physiology, 132, 1631–1641.
   PubMed Web of Science ®Google Scholar
• Sanmartin, M., Pateraki, I., Chatzopoulou, F., & Kanellis, A.K. (2007). Differential expression of the ascorbate oxidase multigene family during fruit development and in response to stress. Planta, 225, 873–885.
   PubMed Web of Science ®Google Scholar
• Shan, X., Tao, C., & Li, H. (2016). Cloning and functional analysis of the promoter of an ascorbate oxidase gene from Gossypium hirsutum. PloS One, 11. doi:10.1371/journal.pone.0161695
   Web of Science ®Google Scholar
• Smirnoff, N. (2003). Ascorbic acid: Metabolism and functions of a multi–Facetted molecule. Current Opinion in Plant Biology, 3, 229–235.
   Google Scholar
• Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution, 30, 2725–2729.
   PubMed Web of Science ®Google Scholar
• Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., & Higgins, D.G. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876–4882.
   PubMed Web of Science ®Google Scholar
• Tullio, M.C.D., Liso, R., & Arrigoni, O. (2004). Ascorbic acid oxidase: An enzyme in search of a role. Biologia Plantarum, 48, 161–166.
   Web of Science ®Google Scholar
• Wilkins, M.R., Gasteiger, E., Bairoch, A., Sanchez, J.C., Williams, K.L., Appel, R.D., & Hochstrasser, D.F. (1999). Protein identification and analysis tools in the ExPASy server. Methods in Molecular Biology, 112, 531–532.
   PubMedGoogle Scholar
• Xu, Q., Zhu, J., Zhao, S., Hou, Y., Li, F., Tai, Y., … Wei, C. (2017). Transcriptome profiling using single-molecule direct RNA sequencing approach for in-depth understanding of genes in secondary metabolism pathways of Camellia sinensis. Frontiers in Plant Science, 11, 1205.
   Google Scholar
• Yamamoto, A., Bhuiyan, M.N., Waditee, R., Tanaka, Y., Esaka, M., Oba, K., … Takabe, T. (2005). Suppressed expression of the apoplasticascorbate oxidase gene increases salt tolerance in tobacco and Arabidopsis plants. Journal of Experimental Botany, 56, 1785–1796.
   PubMed Web of Science ®Google Scholar
• Yue, C., Cao, H., Wang, L., Zhou, Y., Hao, X., Zeng, J., … Yang, Y. (2014). Molecular cloning and expression analysis of tea plant aquaporin (AQP) gene family. Plant Physiology and Biochemistry, 83, 65–76.
   PubMed Web of Science ®Google Scholar