References
- Abu-Halima, M., Hammadeh, M., Schmitt, J., Leidinger, P., Keller, A., Meese, E., & Backes, C. (2013). Altered microRNA expression profiles of human spermatozoa in patients with different spermatogenic impairments. Fertility and Sterility, 99(5), 1249–1255. e16. https://doi.org/https://doi.org/10.1016/S0015-0282(03)00983-X https://doi.org/https://doi.org/10.1016/j.fertnstert.2012.11.054
- Anton, E., & Krawetz, S. A. (2012). Spermatozoa as biomarkers for the assessment of human male infertility and genotoxicity. Systems Biology in Reproductive Medicine, 58(1), 41–50. https://doi.org/https://doi.org/10.3109/19396368.2011.637152
- Babicki, S., Arndt, D., Marcu, A., Liang, Y., Grant, J. R., Maciejewski, A., & Wishart, D. S. (2016). Heatmapper: Web-enabled heat mapping for all. Nucleic Acids Research, 44(W1), W147–W53. https://doi.org/https://doi.org/10.1093/nar/gkw419
- Barrett, T., Wilhite, S. E., Ledoux, P., Evangelista, C., Kim, I. F., Tomashevsky, M., Marshall, K. A., Phillippy, K. H., Sherman, P. M., Holko, M., Yefanov, A., Lee, H., Zhang, N., Robertson, C. L., Serova, N., Davis, S., & Soboleva, A. (2013). NCBI GEO: Archive for functional genomics data sets-update. Nucleic Acids Research, 41(Database issue), D991–D995. https://doi.org/https://doi.org/10.1093/nar/gks1193
- Bartel, D. (2004). MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell, 116(2), 281–297. https://doi.org/https://doi.org/10.1016/S0092-8674(04)00045-5
- Burl, R. B., Clough, S., Sendler, E., Estill, M., & Krawetz, S. A. (2018). Sperm RNA elements as markers of health. Systems Biology in Reproductive Medicine, 64(1), 25–38. https://doi.org/https://doi.org/10.1080/19396368.2017.1393583
- Chi, M. N., Auriol, J., Jégou, B., Kontoyiannis, D. L., Turner, J. M., De Rooij, D. G., & Morello, D. (2011). The RNA-binding protein ELAVL1/HuR is essential for mouse spermatogenesis, acting both at meiotic and postmeiotic stages. Molecular Biology of the Cell, 22(16), 2875–2885. https://doi.org/https://doi.org/10.1091/mbc.E11-03-0212
- Ducummon, C. C., & Berger, T. J. (2006). Localization of the Rho GTPases and some Rho effector proteins in the sperm of several mammalian species. Zygote (Cambridge, England), 14(3), 249–257. https://doi.org/https://doi.org/10.1017/S0967199406003790
- Gadella, B. M. (2008). Sperm membrane physiology and relevance for fertilization. Animal Reproduction Science, 107(3–4), 229–236. https://doi.org/https://doi.org/10.1016/j.anireprosci.2008.05.006
- Gadella, B. M., & Boerke, A. (2016). An update on post-ejaculatory remodeling of the sperm surface before mammalian fertilization. Theriogenology, 85(1), 113–124. https://doi.org/https://doi.org/10.1016/j.theriogenology.2015.07.018
- Garolla, A., Šabović, I., Tescari, S., De Toni, L., Menegazzo, M., Cosci, I., De Filippis, V., Giarola, M., & Foresta, C. (2018). Impaired sperm function in infertile men relies on the membrane sterol pattern. Andrology, 6(2), 325–334. https://doi.org/https://doi.org/10.1111/andr.12468
- Gaur, D., Talekar, M., & Pathak, V. J. (2007). Effect of cigarette smoking on semen quality of infertile men. Singapore Medical Journal, 48(2), 119–123. http://www.smj.org.sg/article/effect-cigarette-smoking-semen-quality-infertile-men
- Goldstein, M. (1998). Surgical management of male infertility and other scrotal disorders. In P.C. Walsh, A.B. Retik, E.D. Vaughan, Jr. & A.J. Wein (Eds), Campbell's urology (7th ed., pp. 1331–1377). W.B. Saunders Company.
- Gunes, S., & Mahmutoglu, A. M. (2019). Transcriptomics and oxidative stress in male infertility. In R. Henkel, L. Samanta, & A. Agarwal (Eds), Oxidants, antioxidants and impact of the oxidative status in male reproduction (pp. 249–260). Elsevier.
- Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009). Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Research, 37(1), 1–13. https://doi.org/https://doi.org/10.1093/nar/gkn923
- Jin, S., Choi, H., Kwon, J. T., Kim, J., Jeong, J., Kim, J., Ham, S., Cho, B. N., Yoo, Y. J., & Cho, C. (2015). Identification and characterization of reproductive KRAB-ZF genes in mice. Gene, 565(1), 45–55. https://doi.org/https://doi.org/10.1016/j.gene.2015.03.059
- Jin, S., Choi, H., Kwon, J. T., Kim, J., Jeong, J., Kim, J., Hong, S. H., & Cho, C. (2017). Identification of target genes for spermatogenic cell-specific KRAB transcription factor ZFP819 in a male germ cell line. Cell & Bioscience, 7(1), 4. https://doi.org/https://doi.org/10.1186/s13578-016-0132-4
- Jurewicz, J., Hanke, W., Radwan, M., & Bonde, J. P. (2009). Environmental factors and semen quality. International Journal of Occupational Medicine and Environmental Health, 22(4), 305–329. https://doi.org/https://doi.org/10.2478/v10001-009-0036-1
- Krawetz, S. A., Kruger, A., Lalancette, C., Tagett, R., Anton, E., Draghici, S., & Diamond, M. P. (2011). A survey of small RNAs in human sperm. Human Reproduction, 26(12), 3401–3412. https://doi.org/https://doi.org/10.1093/humrep/der329
- Li, Q., Ishikawa, T.-O., Miyoshi, H., Oshima, M., & Taketo, M. M. (2005). A targeted mutation of Nkd1 impairs mouse spermatogenesis. The Journal of Biological Chemistry, 280(4), 2831–2839. https://doi.org/https://doi.org/10.1074/jbc.M405680200
- Liu, T., Cheng, W., Gao, Y., Wang, H., & Liu, Z. (2012). Microarray analysis of microRNA expression patterns in the semen of infertile men with semen abnormalities. Molecular Medicine Reports, 6(3), 535–542. https://doi.org/https://doi.org/10.3892/mmr.2012.967
- Lorenz, P., Dietmann, S., Wilhelm, T., Koczan, D., Autran, S., Gad, S., Wen, G., Ding, G., Li, Y., Rousseau-Merck, M. F., & Thiesen, H. J. (2010). The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues. BMC Genomics, 11(1), 206. https://doi.org/https://doi.org/10.1186/1471-2164-11-206
- Marczylo, E. L., Amoako, A. A., Konje, J. C., Gant, T. W., & Marczylo, T. H. (2012). Smoking induces differential miRNA expression in human spermatozoa: a potential transgenerational epigenetic concern? Epigenetics, 7(5), 432–439. https://doi.org/https://doi.org/10.4161/epi.19794
- Meister, G., Landthaler, M., Peters, L., Chen, P. Y., Urlaub, H., Lührmann, R., & Tuschl, T. (2005). Identification of novel argonaute-associated proteins. Current Biology: CB, 15(23), 2149–2155. https://doi.org/https://doi.org/10.1016/j.cub.2005.10.048
- Metzler-Guillemain, C., Victorero, G., Lepoivre, C., Bergon, A., Yammine, M., Perrin, J., Sari-Minodier, I., Boulanger, N., Rihet, P., & Nguyen, C. (2015). Sperm mRNAs and microRNAs as candidate markers for the impact of toxicants on human spermatogenesis: An application to tobacco smoking. Systems Biology in Reproductive Medicine, 61(3), 139–149. https://doi.org/https://doi.org/10.3109/19396368.2015.1022835
- Mostafa, T. (2010). Cigarette smoking and male infertility. Journal of Advanced Research, 1(3), 179–186. https://doi.org/https://doi.org/10.1016/j.jare.2010.05.002
- Noveski, P., Popovska‐Jankovic, K., Kubelka‐Sabit, K., Filipovski, V., Lazarevski, S., Plaseski, T., & Plaseska-Karanfilska, D. (2016). MicroRNA expression profiles in testicular biopsies of patients with impaired spermatogenesis. Andrology, 4(6), 1020–1027. https://doi.org/https://doi.org/10.1111/andr.12246
- Perrin, J., Tassistro, V., Mandon, M., Grillo, J.-M., Botta, A., & Sari-Minodier, I. (2011). Tobacco consumption and benzo(a)pyrene-diol-epoxide-DNA adducts in spermatozoa: In smokers, swim-up procedure selects spermatozoa with decreased DNA damage. Fertility and Sterility, 95(6), 2013–2017. https://doi.org/https://doi.org/10.1016/j.fertnstert.2011.02.021
- Razavi, S. M., Sabbaghian, M., Jalili, M., Divsalar, A., Wolkenhauer, O., & Salehzadeh-Yazdi, A. (2017). Comprehensive functional enrichment analysis of male infertility. Scientific Reports, 7(1), 15778. https://doi.org/https://doi.org/10.1038/s41598-017-16005-0
- Saaranen, M., Suonio, S., Kauhanen, O., & Saarikoski, S. (1987). Cigarette smoking and semen quality in men of reproductive age. Andrologia, 19(6), 670–676. https://doi.org/https://doi.org/10.1111/j.1439-0272.1987.tb01926.x
- Saei, A. A., & Omidi, Y. (2011). A glance at DNA microarray technology and applications. BioImpacts: Bi, 1(2), 75–86. https://doi.org/https://doi.org/10.5681/bi.2011.011
- Salas-Huetos, A., Blanco, J., Vidal, F., Godo, A., Grossmann, M., Pons, M. C., F-Fernández, S., Garrido, N., & Anton, E. (2015). Spermatozoa from patients with seminal alterations exhibit a differential micro-ribonucleic acid profile. Fertility and Sterility, 104(3), 591–601. https://doi.org/https://doi.org/10.1016/j.fertnstert.2015.06.015
- Song, W. Y., Meng, H., Wang, X. G., Jin, H. X., Yao, G. D., Shi, S. L., Wu, L., Zhang, X. Y., & Sun, Y. P. (2017). Reduced micro RNA‐188‐3p expression contributes to apoptosis of spermatogenic cells in patients with azoospermia. Cell Proliferation, 50(1), e12297. https://doi.org/https://doi.org/10.1111/cpr.12297
- Sun, C., Yuan, Q., Wu, D., Meng, X., & Wang, B. (2017). Identification of core genes and outcome in gastric cancer using bioinformatics analysis. Oncotarget, 8(41), 70271–70280. https://doi.org/https://doi.org/10.18632/oncotarget.20082
- Tanwar, P. S., Kaneko-Tarui, T., Zhang, L., Rani, P., Taketo, M. M., & Teixeira, J. (2010a). Constitutive WNT/beta-catenin signaling in murine Sertoli cells disrupts their differentiation and ability to support spermatogenesis. Biology of Reproduction, 82(2), 422–432. https://doi.org/https://doi.org/10.1095/biolreprod.109.079335
- Tanwar, P. S., Zhang, L., Tanaka, Y., Taketo, M. M., Donahoe, P. K., & Teixeira, J. M. (2010b). Focal Mullerian duct retention in male mice with constitutively activated beta-catenin expression in the Mullerian duct mesenchyme . Proceedings of the National Academy of Sciences of the United States of America, 107(37), 16142–16147. https://doi.org/https://doi.org/10.1073/pnas.1011606107
- Tanwar, P. S., Zhang, L., & Teixeira, J. M. (2011). Adenomatous polyposis coli (APC) is essential for maintaining the integrity of the seminiferous epithelium. Molecular Endocrinology (Baltimore, Md), 25(10), 1725–1739. https://doi.org/https://doi.org/10.1210/me.2011-0057
- Thomas, M., Lieberman, J., & Lal, A. (2010). Desperately seeking microRNA targets. Nature Structural & Molecular Biology, 17(10), 1169–1174. https://doi.org/https://doi.org/10.1038/nsmb.1921
- Tokar, T., Pastrello, C., Rossos, A. E., Abovsky, M., Hauschild, A.-C., Tsay, M., Lu, R., & Jurisica, I. (2018). mirDIP 4.1-integrative database of human microRNA target predictions. Nucleic Acids Research, 46(D1), D360–D370. https://doi.org/https://doi.org/10.1093/nar/gkx1144
- Wu, R.-C., Jiang, M., Beaudet, A. L., & Wu, M.-Y. (2013). ARID4A and ARID4B regulate male fertility, a functional link to the AR and RB pathways. Proceedings of the National Academy of Sciences of the United States of America, 110(12), 4616–4621. https://doi.org/https://doi.org/10.1073/pnas.1218318110
- Xie, Z., Yin, X., Gong, B., Nie, W., Wu, B., Zhang, X., Huang, J., Zhang, P., Zhou, Z., & Li, Z. (2015). Salivary microRNAs show potential as a noninvasive biomarker for detecting resectable pancreatic cancer. Cancer Prevention Research (Philadelphia, PA), 8(2), 165–173. https://doi.org/https://doi.org/10.1158/1940-6207.CAPR-14-0192
- Xu, W., Fang, P., Zhu, Z., Dai, J., Nie, D., Chen, Z., Qin, Q., Wang, L., Wang, Z., & Qiao, Z. (2013). Cigarette smoking exposure alters pebp1 DNA methylation and protein profile involved in MAPK signaling pathway in mice testis. Biology of Reproduction, 89(6), 142. 1–11. https://doi.org/https://doi.org/10.1095/biolreprod.113.111245
- Zhang, Z. H., Zhu, H. B., Li, L. L., Yu, Y., Zhang, H. G., & Liu, R. Z. (2013). Decline of semen quality and increase of leukocytes with cigarette smoking in infertile men. International Journal of Reproductive BioMedicine, 11(7), 589–596. http://journals.ssu.ac.ir/ijrmnew/article-1-441-en.html