329
Views
8
CrossRef citations to date
0
Altmetric
Original Research

The effect of main urine inhibitors on the activity of different DNA polymerases in loop-mediated isothermal amplification

, , &
Pages 403-410 | Received 18 Oct 2016, Accepted 13 Jan 2017, Published online: 29 Jan 2017

References

  • Chernesky MA, Jang D, Sellors J, et al. Urinary inhibitors of polymerase chain reaction and ligase chain reaction and testing of multiple specimens may contribute to lower assay sensitivities for diagnosing Chlamydia trachomatis infected women. Mol Cell Probes. 1997;11:243–249.
  • Japelaghi RH, Haddad R, Garoosi GA. Rapid and efficient isolation of high quality nucleic acids from plant tissues rich in polyphenols and polysaccharides. Mol Biotechnol. 2011;49:129–137.
  • Read SJ. Recovery efficiencies of nucleic acid extraction kits as measured by quantitative LightCycler (TM) PCR. J Clin Pathol-Mol Pathol. 2001;54:86–90.
  • Fredricks DN, Smith C, Meier A. Comparison of six DNA extraction methods for recovery of fungal DNA as assessed by quantitative PCR. J Clin Microbiol. 2005;43:5122–5128.
  • He YQ, Zeng K, Zhang SQ, et al. Visual detection of gene mutations based on isothermal strand-displacement polymerase reaction and lateral flow strip. Biosens Bioelectron. 2012;31:310–315.
  • Hu J, Zhang CY. Sensitive detection of nucleic acids with rolling circle amplification and surface-enhanced Raman scattering spectroscopy. Anal Chem. 2010;82:8991–8997.
  • Kim HJ, Tong Y, Tang W, et al. A rapid and simple isothermal nucleic acid amplification test for detection of herpes simplex virus types 1 and 2. J Clin Virol. 2011;50:26–30.
  • Xu G, Hu L, Zhong H, et al. Cross priming amplification: mechanism and optimization for isothermal DNA amplification. Sci Rep. 2012;2:246.
  • Sappat A, Jaroenram W, Puthawibool T, et al. Detection of shrimp Taura syndrome virus by loop-mediated isothermal amplification using a designed portable multi-channel turbidimeter. J Virol Methods. 2011;175:141–148.
  • Jevtusevskaja J, Uusna J, Andresen L, et al. Combination with antimicrobial peptide lyses improves loop-mediated isothermal amplification based method for Chlamydia trachomatis detection directly in urine sample. BMC Infect Dis. 2016;16:329.
  • Iwamoto T, Sonobe T, Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol. 2003;41:2616–2622.
  • Poon LL, Wong BW, Ma EH, et al. Sensitive and inexpensive molecular test for falciparum malaria: detecting Plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. Clin Chem. 2006;52:303–306.
  • Frączyk M, Woźniakowski G, Kowalczyk A, et al. Development of cross-priming amplification for direct detection of the African Swine Fever Virus, in pig and wild boar blood and sera samples. Lett Appl Microbiol. 2016;62:386–391.
  • Safavieh M, Kanakasabapathy MK, Tarlan F, et al. Emerging loop-mediated isothermal amplification-based microchip and microdevice technologies for nucleic acid detection. ACS Biomater Sci Eng. 2016;2:278–294.
  • Mukhopadhyay HK, Amsaveni S, Matta SL, et al. Development and evaluation of loop-mediated isothermal amplification assay for rapid and sensitive detection of canine parvovirus DNA directly in faecal specimens. Lett Appl Microbiol. 2012;55:202–209.
  • Kaneko H, Iida T, Aoki K, et al. Sensitive and rapid detection of herpes simplex virus and varicella-zoster virus DNA by loop-mediated isothermal amplification. J Clin Microbiol. 2005;43:3290–3296.
  • Nakao R, Stromdahl EY, Magona JW, et al. Development of loop-mediated isothermal amplification (LAMP) assays for rapid detection of Ehrlichia ruminantium. BMC Microbiol. 2010;10:296.
  • Notomi T, Okayama H, Masubuchi H, et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000;28:63e-63.
  • Krõlov K, Frolova J, Tudoran O, et al. Sensitive and rapid detection of Chlamydia trachomatis by recombinase polymerase amplification directly from urine samples. J Mol Diagn. 2014;16:127–135.
  • Francois P, Tangomo M, Hibbs J, et al. Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications. FEMS Immunol Med Microbiol. 2011;62:41–48.
  • Hedman J, Rådström P. Overcoming inhibition in real-time diagnostic PCR. Methods Mol Biol. 2013;943:17–48.
  • Khan G, Kangro HO, Coates PJ, et al. Inhibitory effects of urine on the polymerase chain-reaction for cytomegalovirus DNA. J Clin Pathol. 1991;44:360–365.
  • Edwards T, Burke PA, Smalley HB, et al. Loop-mediated isothermal amplification test for detection of Neisseria gonorrhoeae in urine samples and tolerance of the assay to the presence of urea. J Clin Microbiol. 2014;52:2163–2165.
  • Behzadbehbahani A, Klapper PE, Vallely PJ, et al. Detection of BK virus in urine by polymerase chain reaction: a comparison of DNA extraction methods. J Virol Methods. 1997;67:161–166.
  • Farell EM, Alexandre G. Bovine serum albumin further enhances the effects of organic solvents on increased yield of polymerase chain reaction of GC-rich templates. BMC Res Notes. 2012;5:257.
  • Rauter C, Mueller M, Diterich I, et al. Critical evaluation of urine-based PCR assay for diagnosis of Lyme borreliosis. Clin Diagn Lab Immunol. 2005;12:910–917.
  • Stults JR, Snoeyenbos-West O, Methe B, et al. Application of the 5ʹ fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments. Appl Environ Microbiol. 2001;67:2781–2789.
  • Mabey D, Rw P, Ustianowski A, et al. Diagnostics for the developing world. Nat Rev Microbiol. 2004;2:231–240.
  • Ignatov KB, Barsova EV, Fradkov AF, et al. A strong strand displacement activity of thermostable DNA polymerase markedly improves the results of DNA amplification. Biotechniques. 2014;57:81–87.
  • Chander Y, Koelbl J, Puckett J, et al. A novel thermostable polymerase for RNA and DNA loop-mediated isothermal amplification (LAMP). Front Microbiol. 2014;5:395.
  • Tanner NA, Zhang Y, Evans TC Jr. Simultaneous multiple target detection in real-time loop-mediated isothermal amplification. Biotechniques. 2012;53:81–89.
  • Kaneko H, Kawana T, Fukushima E, et al. Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances. J Biochem Biophys Methods. 2007;70:499–501.
  • Woźniakowski G, Samorek-Salamonowicz E. Direct detection of Marek’s disease virus in poultry dust by loop-mediated isothermal amplification. Arch Virol. 2014;159:3083–3087.
  • Tian B, Qiu Z, Ma J, et al. Attomolar Zika virus oligonucleotide detection based on loop-mediated isothermal amplification and AC susceptometry. Biosens Bioelectron. 2016;86:420–425.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.