1,365
Views
37
CrossRef citations to date
0
Altmetric
Review

Application of NanoString technologies in companion diagnostic development

, , , , , , , ORCID Icon & show all
Pages 591-598 | Received 23 Feb 2019, Accepted 22 May 2019, Published online: 05 Jun 2019

References

  • Veldman-Jones MH, Brant R, Rooney C, et al. Evaluating robustness and sensitivity of the NanoString technologies nCounter platform to enable multiplexed gene expression analysis of clinical samples. Cancer Res. 2015;75(13):2587–2593.
  • Reis PP, Waldron L, Goswami RS, et al. mRNA transcript quantification in archival samples using multiplexed, color-coded probes. BMC Biotechnol. 2011;11(1):46.
  • Brumbaugh CD, Kim HJ, Giovacchini M, et al. NanoStriDE: normalization and differential expression analysis of NanoString nCounter data. BMC Bioinformatics. 2011;12(1):479.
  • Kulkarni MM. Digital multiplexed gene expression analysis using the NanoString nCounter system. Curr Protoc Mol Biol. 2011; 94(1)25B–10.
  • Malkov VA, Serikawa KA, Balantac N, et al. Multiplexed measurements of gene signatures in different analytes using the Nanostring nCounter assay system. BMC Res Notes. 2009;2:80.
  • M’Boutchou MN, van Kempen LC. Analysis of the tumor microenvironment transcriptome via NanoString mRNA and miRNA expression profiling. Methods Mol Biol. 2016;1458:291–310.
  • Redekop WK, Mladsi D. The faces of personalized medicine: a framework for understanding its meaning and scope. Value Health. 2013;16(6):S4–9.
  • A Fairley J, Gilmour K, Walsh K. Making the most of pathological specimens: molecular diagnosis in formalin-fixed, paraffin embedded tissue. Curr Drug Targets. 2012;13(12):1475–1487.
  • FDA. Companion diagnostics. 2018. [online] [cited 2018 Apr 16]. Available from: https://www.fda.gov/MedicalDevices/ProductsandMedicalProcedures/InVitroDiagnostics/ucm407297.htm.
  • FDA. List of cleared or approved companion diagnostic devices (in vitro and imaging tools). 2018. [online] [cited 2018 Apr 16] Available from: https://www.fda.gov/MedicalDevices/ProductsandMedicalProcedures/InVitroDiagnostics/ucm301431.htm.
  • Tsang HF, Xue VW, Koh SP, et al. NanoString, a novel digital color-coded barcode technology: current and future applications in molecular diagnostics. Expert Rev Mol Diagn. 2017;17(1):95–103.
  • Tekletsion Y, Christensen H, Finn A. Gene detection and expression profiling of Neisseria meningitidis using NanoString nCounter platform. J Microbiol Methods. 2018;146:100–103.
  • Foye C, Yan I, David W, et al. Comparison of miRNA quantitation by Nanostring in serum and plasma samples. PLoS One. 2017;12(12):e0189165.
  • Huang B, West N, Vider J, et al. Diagnosis and typing of influenza using fluorescent barcoded probes. Sci Rep. 2017;7(1):18092.
  • Wallden B, Storhoff J, Nieisen T, et al. Development and verification of the PAM50-based Prosigna breast cancer gene signature assay. BMC Med Genomics. 2015;8:54.
  • Prosigna. See the difference with Prosigna -- breast cancer prognostic gene signature assay. 2017; [online] p.1–4. [cited 2017 Jul] Available from: http://prosigna.com/docs/Prosigna_Product_Data_Sheet_US.pdf.
  • Agarwal A, Ressler D, Snyder G. The current and future state of companion diagnostics. Pharmgenomics Pers Med. 2015;8:99–110.
  • Cesano A, Warren S. Bringing the next generation of immuno-oncology biomarkers to the clinic. Biomedicines. 2018;6(1):14.
  • Lira ME, Kim TM, Huang D, et al. Multiplexed gene expression and fusion transcript analysis to detect ALK fusions in lung cancer. J Mol Diagn. 2013;15(1):51–61.
  • Chang KTE, Goytain A, Tucker T, et al. Development and evaluation of a pan-sarcoma fusion gene detection assay using the NanoString nCounter platform. J Mol Diagn. 2018;20(1):63–77.
  • Ma W, Gilligan BM, Yuan J, et al. Current status and perspectives in translational biomarker research for PD-1/PD-L1 immune checkpoint blockade therapy. J Hematol Oncol. 2016;9(1):47.
  • Ayers M, Lunceford J, Nebozhyn M, et al. IFN-γ–related mRNA profile predicts clinical response to PD-1 blockade. J Clin Invest. 2017;127(8):2930–2940.
  • Chen DS, Mellman I. Elements of cancer immunity and the cancer–immune set point. Nature. 2017;541(7637):321–330.
  • Observer ML NanoString and celgene join forces to develop gene-based companion diagnostics. 2014. [Online]. Available from: https://www.mlo-online.com/nanostring-and-celgene-join-forces-to-develop-gene-based-companion-diagnostics.php.
  • Camicia R, Winkler HC, Hassa PO. Novel drug targets for personalized precision medicine in relapsed/refractory diffuse large B-cell lymphoma: a comprehensive review. Mol Cancer. 2015;14:207.
  • Jinho L, Christopher PV, Gavin M, et al. 3D biology view of cancer: simultaneous detection of somatic DNA mutations and expression profiling of genes and signaling proteins from melanoma tumor FFPE samples. Advances in Genome Biology and Technology (AGBT) Conference. Diplomat Beach Resort, Hollywood Beach, Florida, USA. 2017.
  • Mark M, Tushar R, Matt W, et al. Direct single-molecule RNA sequencing without cDNA conversion using Hyb & SeqTM chemistry. Advances in Genome Biology and Technology (AGBT) conference. Diplomat Beach Resort, Hollywood Beach, Florida, USA. 2017.
  • Farrell D. NanoString highlights progress on product roadmap featuring multiple innovative technologies .Advances in Genome Biology and Technology (AGBT) conference. Diplomat Beach Resort, Hollywood Beach, Florida, USA. 2017.
  • Fiziev P, Akdemir KC, Miller JP, et al. Systematic epigenomic analysis reveals chromatin states associated with melanoma progression. Cell Rep. 2017;19(4):875–889.
  • Pohjanvirta R, Niittynen M, Linden J, et al. Evaluation of various housekeeping genes for their applicability for normalization of mRNA expression in dioxin-treated rats. Chem Biol Interact. 2006;160:134–149.
  • Narrandes S, Xu W. Gene expression detection assay for cancer clinical use. J Cancer. 2018;9(13):2249–2265.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.