RT-LAMP in SARS-CoV-2 detection: point to improve primer designing and decrease molecular diagnosis pitfalls

References

• Wu D, Wu T, Liu Q, et al. The SARS-CoV-2 outbreak: what we know. Int J Infect Dis. 2020;94:44–48.
   PubMed Web of Science ®Google Scholar
• Harapan H, Itoh N, Yufika A, et al. Coronavirus disease 2019 (COVID-19): a literature review. J Infect Public Health. 2020;13(5):667–673.
   PubMed Web of Science ®Google Scholar
• Tré‐Hardy M, Wilmet A, Beukinga I, et al. Analytical and clinical validation of an ELISA for specific SARS‐CoV‐2 IgG, IgA, and IgM antibodies. J Med Virol. 2021;93(2):803–811.
   PubMed Web of Science ®Google Scholar
• van Kasteren Pb, van Der Veer B, van den Brink S, et al. Comparison of seven commercial RT-PCR diagnostic kits for COVID-19. J Clin Virol. 2020;128:104412.
   PubMed Web of Science ®Google Scholar
• Chen L, Liu W, Zhang Q, et al. RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak. Emerg Microbes Infect. 2020;9(1):313–319.
   PubMed Web of Science ®Google Scholar
• Loeffelholz MJ, Tang Y-W. Laboratory diagnosis of emerging human coronavirus infections–the state of the art. Emerg Microbes Infect. 2020;9(1):747–756.
   PubMed Web of Science ®Google Scholar
• Arevalo-Rodriguez I, Buitrago-Garcia D, Simancas-Racines D, et al. False-negative results of initial RT-PCR assays for COVID-19: a systematic review. PLoS One. 2020;15(12):e0242958.
   PubMed Web of Science ®Google Scholar
• Tahamtan A, Ardebili A. Real-time RT-PCR in COVID-19 detection: issues affecting the results. Expert Rev Mol Diagn. 2020;20(5):453–454.
   PubMed Web of Science ®Google Scholar
• Watson J, Whiting PF, Brush JE. Interpreting a covid-19 test result. BMJ. 2020;369:m1808.
   PubMed Web of Science ®Google Scholar
• West CP, Montori VM, Sampathkumar P. COVID-19 testing: the threat of false-negative results. Mayo Clin Proc. 2020;95(6):1127–1129.
   PubMed Web of Science ®Google Scholar
• Vandenberg O, Martiny D, Rochas O, et al. Considerations for diagnostic COVID-19 tests. Nat Rev Microbiol. 2021;19(3):171–183.
   PubMed Web of Science ®Google Scholar
• Deiman B, van Aarle P, Sillekens P. Characteristics and applications of nucleic acid sequence-based amplification (NASBA). Mol Biotechnol. 2002;20(2):163–179.
   PubMed Web of Science ®Google Scholar
• Huang WE, Lim B, Hsu CC, et al. RT‐LAMP for rapid diagnosis of coronavirus SARS‐CoV‐2. Microb Biotechnol. 2020;13(4):950–961.
   PubMed Web of Science ®Google Scholar
• Barreda-García S, Miranda-Castro R, de-Los-Santos-Álvarez N, et al. Helicase-dependent isothermal amplification: a novel tool in the development of molecular-based analytical systems for rapid pathogen detection. Anal Bioanal Chem. 2018;410(3):679–693.
   PubMed Web of Science ®Google Scholar
• Wang B, Potter SJ, Lin Y, et al. Rapid and sensitive detection of severe acute respiratory syndrome coronavirus by rolling circle amplification. J Clin Microbiol. 2005;43(5):2339–2344.
   PubMed Web of Science ®Google Scholar
• Daher RK, Stewart G, Boissinot M, et al. Recombinase polymerase amplification for diagnostic applications. Clin Chem. 2016;62(7):947–958.
   PubMed Web of Science ®Google Scholar
• Wang Y, Li H, Wang Y, et al. Development of multiple cross displacement amplification label-based gold nanoparticles lateral flow biosensor for detection of Listeria monocytogenes. Int J Nanomed. 2017;12:473.
   PubMed Web of Science ®Google Scholar
• Notomi T, Okayama H, Masubuchi H, et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000;28(12):e63–e63.
   PubMed Web of Science ®Google Scholar
• Corman VM, Landt O, Kaiser M, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Eurosurveillance. 2020;25(3):2000045.
   Web of Science ®Google Scholar
• Centers for Disease Control and Prevention. The CDC 2019 novel coronavirus (2019 nCoV) real time Rt-PCR diagnostics [cited 2020 Jan 24]. https://www.fda.gov/media/134922/download.pdf (2019).
   Google Scholar
• Yu L, Wu S, Hao X, et al. Rapid detection of COVID-19 coronavirus using a reverse transcriptional loop-mediated isothermal amplification (RT-LAMP) diagnostic platform. Clin Chem. 2020;66(7):975–977.
   PubMed Web of Science ®Google Scholar
• Suwancharoen D, Kulchim C, Chirathaworn C, et al. Development of a novel primer combination to detect pathogenic Leptospira by loop-mediated isothermal amplification. J Microbiol Methods. 2012;91(1):171–173.
   PubMed Web of Science ®Google Scholar
• Wiame I, Remy S, Swennen R, et al. Irreversible heat inactivation of DNase I without RNA degradation. Biotechniques. 2000;29(2):252–256.
   PubMed Web of Science ®Google Scholar
• Lu R, Wu X, Wan Z, et al. A novel reverse transcription loop-mediated isothermal amplification method for rapid detection of SARS-CoV-2. Int J Mol Sci. 2020;21(8):2826.
   PubMed Web of Science ®Google Scholar
• Lu R, Wu X, Wan Z, et al. Development of a novel reverse transcription loop-mediated isothermal amplification method for rapid detection of SARS-CoV-2. Virol Sin. 2020;35(3):344–347.
   PubMed Web of Science ®Google Scholar
• Kashir J, Yaqinuddin A. Loop mediated isothermal amplification (LAMP) assays as a rapid diagnostic for COVID-19. Med Hypotheses. 2020;141:109786.
   PubMed Web of Science ®Google Scholar
• Chan WM, Ip JD, Chu AWH, et al. Identification of nsp1 gene as the target of SARS‐CoV‐2 real‐time RT‐PCR using nanopore whole‐genome sequencing. J Med Virol. 2020;92(11):2725–2734.
   PubMed Web of Science ®Google Scholar
• Nayar G, Seabolt EE, Kunitomi M, et al. Analysis and forecasting of global real time RT-PCR primers and probes for SARS-CoV-2. Sci Rep. 2021;11(1):1–11.
   PubMed Web of Science ®Google Scholar
• Hsieh K, Mage PL, Csordas AT, et al. Simultaneous elimination of carryover contamination and detection of DNA with uracil-DNA-glycosylase-supplemented loop-mediated isothermal amplification (UDG-LAMP). ChemComm. 2014;50(28):3747–3749.
   PubMed Web of Science ®Google Scholar
• Ma C, Wang F, Wang X, et al. A novel method to control carryover contamination in isothermal nucleic acid amplification. ChemComm. 2017;53(77):10696–10699.
   PubMed Web of Science ®Google Scholar
• Li Y, Yao L, Li J, et al. Stability issues of RT‐PCR testing of SARS‐CoV‐2 for hospitalized patients clinically diagnosed with COVID‐19. J Med Virol. 2020;92(7):903–908.
   PubMed Web of Science ®Google Scholar
• Li Y, Xia L. Coronavirus disease 2019 (COVID-19): role of chest CT in diagnosis and management. Am J Roentgenol. 2020;214(6):1280–1286.
   PubMed Web of Science ®Google Scholar