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Research Article

A molecular phylogeny of Bopyroidea and Cryptoniscoidea (Crustacea: Isopoda)

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Pages 495-506 | Received 04 May 2013, Accepted 11 Nov 2013, Published online: 16 Dec 2013

References

  • Adkison, D.L. 1990. A review of the Entoniscinae (Isopoda: Epicaridea: Entoniscidae). Ph.D. dissertation, Tulane University, New Orleans, Louisiana, USA pp. 1–199.
  • Adkison, D.L., Heard, R.W. & Clark, G.T. 1982. Description of the male and notes on the female of Argeiopsis inhacae (Crustacea: Isopoda: Bopyridae). Proceedings of the Biological Society of Washington 95, 334–337.
  • An, J., Markham, J.C. & Yu, H. 2010. Description of two new species and a new genus of bopyrid isopod parasites (Bopyridae: Pseudioninae) of hermit crabs from China. Journal of Natural History 44, 2065–2073.
  • An, J., Boyko, C.B. & Li, X. 2012. Two new species of the genus Megacepon George, 1947 (Crustacea: Isopoda: Bopyridae) infesting Varunidae (Crustacea: Brachyura: Grapsoidea) from China. Journal of Natural History 46, 131–143.
  • Bourdon, R. 1968. Les Bopyridae des mers européennes. Mémoires du Muséum National d’Histoire Naturelle, Série A, Zoologie 50, 77–424.
  • Bourdon, R. & Boyko, C.B. 2005. Redescription of Bopyrophryxus branchiabdominalis Codreanu, 1965 (Crustacea: Isopoda: Bopyridae) with a reappraisal of the subfamily Bopyrophryxinae Codreau, 1965. Proceedings of the Biological Society of Washington 118, 108–116.
  • Boyko, C.B. & Williams, J.D. 2009. Crustacean parasites as phylogenetic indicators in decapod evolution, pp. 197–220. In: MARTIN, J.W., CRANDALL, K.A. & FELDER, D.L., Eds., Decapod crustacean phylogenetics (Crustacean Issues). CRC Press, Boca Raton, FL, USA.
  • Brandt, A. & Poore, G.C.B. 2003. Higher classification of the flabelliferan and related Isopoda based on a reappraisal of relationships. Invertebrate Systematics 17, 893–923.
  • Brusca, R.C. & Wilson, G.D.F. 1991. A phylogenetic analysis of the Isopoda with some classificatory recommendations. Memoirs of the Queensland Museum 31, 143–204.
  • Caira, J.N. & Jensen, K. 2001. An investigation of the co-evolutionary relationships between onchobothriid tapeworms and their elasmobranch hosts. International Journal for Parasitology 31, 960–975.
  • Conow, C., Fielder, D., Ovadia, Y. & Libeskind-Hadas, R. 2010. Jane: a new tool for the cophylogeny reconstruction problem. Algorithms for Molecular Biology 5, 16.
  • Cribb, T.H., Bray, R.A. & Littlewood, D.T.J. 2001. The nature and evolution of the association among digeneans, molluscs and fishes. International Journal for Parasitology 31, 997–1011.
  • Desdevises, Y., Morand, S., Jousson, O. & Legendre, P. 2002. Coevolution between Lamellodiscus (Monogenea: Diplectanidae) and Sparidae (Teleostei): the study of a complex host–parasite system. Evolution 56, 2459–2471.
  • Do, C.B., Mahabhashyam, M.S., Brudno, M. & Batzoglou, S. 2005. ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Research 15, 330–340.
  • Dreyer, H. & Wägele, J.-W. 2001. Parasites of crustaceans (Isopoda: Bopyridae) evolved from fish parasites: molecular and morphological evidence. Zoology 103, 157–178.
  • Dreyer, H. & Wägele, J.-W. 2002. The Scutocoxifera tax. nov. and the information content of nuclear ssu rDNA sequences for reconstruction of isopod phylogeny (Peracarida: Isopoda). Journal of Crustacean Biology 22, 217–234.
  • Duvernoy, G.L. & Lereboullet, D.A. 1841. Essai d’une monographie des organes de la respiration de l’ordre des crustacés isopodes. Annales des Sciences Naturelles (2e Série) 15, 177–240, pl. 6.
  • Edgar, R.C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32, 1792–1797.
  • Fraisse, P. 1878. Die Gattung Cryptoniscus Fr. Müller. Arbeiten aus dem Zoologisch-Zootomischen Institut in Würzburg 4, 239–296, pls. 12–15.
  • Grygier, M.J. 1981. Gorgoniscus incisodactylus, a new isopod of the epicaridean superfamily Cryptoniscoidea, parasitic on an ascothoracican cirriped from Hawaii. Proceedings of the Biological Society of Washington 94, 122–134.
  • Held, C. 2000. Phylogeny and biogeography of serolid isopods (Crustacea, Isopoda, Serolidae) and the use of ribosomal expansion segments in molecular systematics. Molecular Phylogenetics and Evolution 15, 165–178.
  • Hoberg, E.P. & Klassen, G.J. 2002. Revealing the faunal tapestry: co-evolution and historical biogeography of hosts and parasites in marine systems. Parasitology 124, S3–S22.
  • Hosie, A.M. 2008. Four new species and a new record of Cryptoniscoidea (Crustacea: Isopoda: Hemioniscidae and Crinoniscidae) parasitizing stalked barnacles from New Zealand. Zootaxa 1795, 1–28.
  • Huelsenbeck, J.P. & Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754–755.
  • Jenner, R.A., Dhubhghaill, C.N., Ferla, M.P. & Wills, M.A. 2009. Eumalacostracan phylogeny and total evidence: limitations of the usual suspects. BioMed Central Evolutionary Biology 9, 21.
  • Katoh, K., Misawa, K., Kuma, K. & Miyata, T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30, 3059–3066.
  • Kensley, B. 1979. Redescription of Zonophryxus trilobus Richardson, with notes on the male and developmental stages (Crustacea: Isopoda: Dajidae). Proceedings of the Biological Society of Washington 92, 665–670.
  • Koenemann, S., Jenner, R.A., Hoenemann, M., Stemme, T. & Von Reumont, B.M. 2010. Arthropod phylogeny revisited, with a focus on crustacean relationships. Arthropod Structure & Development 39, 88–110.
  • Lanterbecq, D., Rouse, G.W. & Eeckhaut, I. 2010. Evidence for cospeciation events in the host–symbiont system involving crinoids (Echinodermata) and their obligate associates, the myzostomids (Myzostomida, Annelida). Molecular Phylogenetics and Evolution 54, 357–371.
  • Lee, C., Grasso, C. & Sharlow, M.F. 2001. Multiple sequence alignment using partial order graphs. Bioinformatics 18, 452–464.
  • Lin, F.-J., Liu, Y., Sha, Z., Tsang, L.M., Chu, K.H., Chan, T.-Y., Liu, R. & Cui, Z. 2012. Evolution and phylogeny of the mud shrimps (Crustacea: Decapoda) revealed from complete mitochondrial genomes. BioMed Central Genomics 12, 631.
  • Markham, J.C. 1982. Bopyrid isopods parasitic on decapod crustaceans in Hong Kong and southern China, pp. 325–391. In: Morton, B.S. & Tseng, C.K. (Eds.), Volume 1, Proceedings of the First International Marine Biological Workshop: The Marine Flora and Fauna of Hong Kong and Southern China.
  • Markham, J.C. 1985. A review of the bopyrid isopods infesting caridean shrimps in the northwestern Atlantic Ocean, with special reference to those collected during the Hourglass Cruises in the Gulf of Mexico. Memoirs of the Hourglass Cruises 8, 1–156.
  • Markham, J.C. 1986. Evolution and zoogeography of the Isopoda Bopyridae, parasites of Crustacea Decapoda. In: Gore, R.H. & Heck, K.L., Eds., Crustacean Issues 4. Crustacean Biogeography. A.A. Balkema, Rotterdam, the Netherlands, pp. 143–164.
  • Markham, J.C. & Boyko, C.B. 2003. A new species of Albunione Markham & Boyko, 1999 (Crustacea: Isopoda: Bopyridae: Pseudioninae) from Taiwan. American Museum Novitates 3410, 1–7.
  • Markham, J.C. & Dworschak, P.C. 2005. A new species of Entophilus Richardson, 1903 (Isopoda: Bopyridae: Entophilidae) from the Gulf of Aqaba. Journal of Crustacean Biology 25, 413–419.
  • Martin, J.W. & Davis, G.E. 2001. An updated classification of the recent Crustacea. Natural History Museum of Los Angeles County Science Series 39, 1–124.
  • Mattern, D. & Schlegel, M. 2001. Molecular evolution of the small subunit ribosomal DNA in woodlice (Crustacea, Isopoda, Oniscidae) and implications for oniscidean phylogeny. Molecular Phylogenetics and Evolution 18, 54–65.
  • Medlin, L., Elwood, H.J., Stickel, S. & Sogin, M.L. 1988. The characterization of enzymatically amplified eukaryotic16S-like rRNA-coding proteins. Gene 71, 491–499.
  • Monod, T. 1922. Sur un essai de classification rationnelle des isopodes. Bulletin de la Societé Zoologique de France 47, 134–140.
  • Notredame, C., Higgins, D.G. & Heringa, J. 2000. T-Coffee: a novel method for fast and accurate multiple sequence alignment. Journal of Molecular Biology 302, 205–217.
  • Pei, J., Sadrevev, R. & Grishin, N.V. 2002. PCMA: fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics 19, 427–428.
  • Pike, R.B. 1961. Observations on Epicaridea obtained from hermit-crabs in British waters, with notes on the longevity of the host-species. Annals and Magazine of Natural History, 13th ser. 4, 225–240.
  • Poore, G.C.B. 2005. Peracarida: Monophyly, relationships and evolutionary success. Nauplius 13, 1–27.
  • Posada, D. & Crandall, K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817–818.
  • Rannala, B. & Yang, Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43, 304–311.
  • Raupach, M.J., Held, C. & Wägele, J.-W. 2004. Multiple colonization of the deep sea by the Asellota (Crustacea: Peracarida: Isopoda). Deep Sea Research 51, 1787–1795.
  • Regier, J.C., Shultz, J.W., Zwick, A., Hussey, A., Ball, B., Wetzer, R., Martin, J.W. & Cunningham, C.W. 2010. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature 463, 1079–1083.
  • Schmalfuss, H. 1989. Phylogenetics in Oniscoidea. Monitore Zoologia Italiana Monographs 4, 3–27.
  • Schotte, M., Boyko, C.B., Bruce, N.L., Poore, G.C.B., Taiti, S., et al. 2013. World Marine, Freshwater and Terrestrial Isopod Crustaceans database. Accessed through: World Register of Marine Species at: http: //www.marinespecies.org/aphia.php?p = taxdetails&id = 1131 (accessed 12 November 2013).
  • Shen, H., Braband, A. & Scholtz, G. 2012. Mitogenomic analysis of decapod crustacean phylogeny corroborates traditional views on their relationships. Molecular Phylogenetics and Evolution 66, 776–789.
  • Shields, J.D. & Earley, C.G. 1993. Cancrion australiensis new species (Isopoda: Entoniscidae) found in Thalamita sima (Brachyura: Portunidae) from Australia. International Journal for Parasitology 23, 601–608.
  • Shiino, S.M. 1952. Phylogeny of the family Bopyridae. Annual Report of the Prefectural University of Mie, section 2, Natural Science 1, 33–56.
  • Shiino, S.M. 1965. Phylogeny of the genera within the family Bopyridae. Bulletin du Muséum National d’Histoire Naturelle, ser. 2 37, 462–465.
  • Strömberg, J.-O. 1972. Isopod phylogeny. Aspects based on embryological, morphological and palaeontological evidence. Contributions of the Zoological Institute of the University of Lund 1972, 1–112.
  • Subramanian, A.R., Kauffman, M. & Morgenstern, B. 2008. DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms for Molecular Biology 3, 6.
  • Swofford, D.L. 2002. PAUP Phylogenetic Analysis Using Parsimony (and Other Methods). Version 4.0b10. Sinauer Associates, Sunderland, MA, USA.
  • Thompson, J.D., Higgins, D.G. & Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673–4680.
  • Trilles, J.-P. 1999. Ordre des isopodes sous-ordre des épicarides (Epicaridea Latreille, 1825) In: Forest, J., Ed. Traité de Zoologie. Anatomie, Systématique, Biologie (Pierre-P. Grassé). Tome VII, Fascicule III A, Crustacés Péracarides. Memoires de l’Institut Oceanographique, Monaco 19, 279–352.
  • Wägele, J.-W. 1989. Evolution und phylogenetisches System der Isopoda. Zoologica 140, 1–262.
  • Wetzer, R. 2001. Hierarchical analysis of mtDNA variation and the use of mtDNA for isopod (Crustacea: Peracarida: Isopoda) systematics. Contributions to Zoology 70, 23–39.
  • Wetzer, R. 2002. Mitochondrial genes and isopod phylogeny (Peracarida: Isopoda). Journal of Crustacean Biology 22, 1–14.
  • Wetzer, R., Pérez Losada, M. & Bruce, N.L. 2013. Phylogenetic relationships of the family Sphaeromatidae Latreille, 1825 (Crustacea: Peracarida: Isopoda) within Sphaeromatidea based on 18S-rDNA molecular data. Zootaxa 3599, 161–177.
  • Williams, J.D. & Boyko, C.B. 2012. The global diversity of parasitic isopods associated with crustacean hosts (Isopoda: Bopyroidea and Cryptoniscoidea). Public Library of Science ONE 7, e35350.
  • Wilson, G.D.F. 2009. The phylogenetic position of the Isopoda in the Pericarida (Crustacea: Malacostraca). Arthropod Systematics and Phylogeny 67, 159–198.

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