References
- Aberer, A. J., Krompass, D., & Stamatakis, A. (2013). Pruning rogue taxa improves phylogenetic accuracy: An efficient algorithm and webservice. Systematic Biology, 62, 162–166. doi: 10.1093/sysbio/sys078
- Aberer, A. J., & Stamatakis, A. (2011). A simple and accurate method for rogue taxon identification. Atlanta, Georgia: IEEE International Conference on Bioinformatics and Biomedicine. doi: 10.1109/BIBM.2011.70
- Agorreta, A., Mauro, D. S., Schliewen, U., Van Tassell, J. L., Kovacic, M., Zardoya, R., & Ruber, L. (2013). Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies. Molecular Phylogenetics and Evolution, 69, 619–633. doi: 10.1016/j.ympev.2013.07.017.
- Akshay, D., Dong, J., & Fernández-Baca, D. (2012). Identifying rogue taxa through reduced consensus: NP-Hardness and exact algorithms. In L. Bleris, I. Măndoiu, R. Schwartz, & J. Wang (Eds.), International symposium on bioinformatics research and applications (pp. 87–98). Berlin Heidelberg (Germany): Springer-Verlag.
- Maronna, M. M., Miranda, T. P., Cantero, A. L. P., Barbeitos, M. S., & Marques, A. C. (2016). Towards a phylogenetic classification of Leptothecata (Cnidaria, Hydrozoa). Scientific Reports, 6. doi: 10.1038/srep18075
- Pattengale, N., Aberer, A. J., Swenson, K., Stamatakis, A., & Moret, B. (2011). Uncovering hidden phylogenetic consensus in large datasets. IEEM/ACM Transasctions on Computational Biology and Bioinformatics, 8, 902–911. doi: 10.1109/TCBB.2011.28
- Selvatti, A. P., Gonzaga, L. P., Augusta, C., & Russo, M. (2015). A Paleogene origin for crown passerines and the diversification of the Oscines in the New World. Molecular Phylogenetics and Evolution, 88, 1–15. doi: 10.1016/j.ympev.2015.03.018.
- Siu-Ting, K., Pisani, D., Creevey, C. J., & Wilkinson, M. (2015). Concatabominations: Identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction. Systematic Biology, 64, 137–143. doi: 10.1093/sysbio/syu066
- Swofford, D. (2003). PAUP*: Phylogenetic analysis using parsimony. Version 4.0 b10. Sunderland, Massachusetts: Sinauer Associates.
- Timmermans, M. J. T.N., Barton, C., Haran, J., Ahrens, D., Culverwell, C. L., Ollikainen, A., … Vogler, A. P. (2016). Family-level sampling of mitochondrial genomes in Coleoptera: Compositional heterogeneity and phylogenetics. Genome Biology and Evolution, 8, 161–175. doi: 10.1093/gbe/evv241
- Thorley, J. L., & Wilkinson, M. (1999). Testing the phylogenetic stability of early tetrapods. Journal of Theoretical Biology, 200, 343–344. doi: 10.1006/jtbi.1999.0999
- Thorley, J. L., Wilkinson, M., & Charleston, M. A. (1998). The information content of consensus trees. In: A. Rizzi, M. Vichi, & H. H. Bock (Eds.), Advances in data science and classification (pp. 91–98). Berlin, Germany: Springer-Verlag.
- Wilkinson, M. (1994). Common cladistic information and its consensus representation: Reduced Adams and reduced cladistic consensus trees and profiles. Systematic Biology, 43, 343–368. doi: 10.1093/sysbio/43.3.343
- Wilkinson, M. (1995a). Coping with missing entries in phylogenetic inference using parsimony. Systematic Biology, 44, 501–514. doi: 10.1093/sysbio/44.4.501
- Wilkinson, M. (1995b). More on reduced consensus methods. Systematic Biology, 44, 435–439. doi: 10.2307/2413604
- Wilkinson, M. (1996). Majority-rule reduced consensus methods and their use in bootstrapping. Molecular Biology and Evolution, 13, 437–444. Retrieved from: http://mbe.oxfordjournals.org/ (accessed 19 October 2016).
- Wilkinson, M. (2003). Missing data and multiple trees: Instability, relationships, and support in parsimony analysis. Journal of Vertebrate Paleontology, 23, 311–323. doi: 10.1671/0272-4634
- Wilkinson, M. (2006). Identifying stable reference taxa for phylogenetic nomenclature. Zoologica Scripta, 35, 109–112. doi: 10.1111/j.1463-6409.2005.00213.x
- Wilkinson, M., Cotton, J. A., & Thorley, J. L. (2004). The information content of trees and their matrix representations. Systematic Biology, 53, 989–1001. doi: 10.1080/10635150490522737
- Wilkinson, M., & Thorley, J. L. (2003). Reduced consensus. In M. F. Janovitz, F. J. Lapointe, F. R. McMorris, B. Mirkin, & F. S. Roberts (Eds.), Bioconsensus, DIMCAS Series in Discrete Mathematics and Theoretical Computer Science (Vol. 61, pp. 195–204). Providence, RI: American Mathematical Society.
- Wilkinson, M., Thorley, J. L., Pisani, D., Lapointe, F. J., & McInerney, J. O. (2004). Some desiderata for liberal supertrees. In O. Bininda-Emonds (Ed.), Phylogenetic supertrees (pp. 227–246). Dordrecht, Netherlands: Kluwer Academic Publishers.