478
Views
0
CrossRef citations to date
0
Altmetric
Research Article

Molecular taxonomic identification and species-level phylogeny of the narrow-mouthed frogs of the genus Rhombophryne (Anura: Microhylidae: Cophylinae) from Madagascar

ORCID Icon, , , ORCID Icon, , , , , , & ORCID Icon show all

References

  • AmphibiaWeb. (2021). AmphibiaWeb. https://amphibiaweb.org (accessed 09th March 2021).
  • Andreone, F., & Randrianirina, J. E. (2008). An unexpected Rhombophryne record at Tsingy de Bemaraha confirms the presence of cophyline frogs in western Madagascar. Zootaxa, 1812(1), 46–48. https://doi.org/10.11646/zootaxa.1812.1.2
  • Andreone, F., Vences, M., Vieites, D. R., Glaw, F., & Meyer, A. (2005). Recurrent ecological adaptations revealed through a molecular analysis of the secretive cophyline frogs of Madagascar. Molecular Phylogenetics and Evolution, 34(2), 315–322.
  • Bellati, A., Scherz, M. D., Megson, S., Hyde Roberts, S., Andreone, F., Rosa, G. M., Noël, J., Randrianirina, J. E., Fasola, M., Glaw, F., & Crottini, A. (2018). Resurrection and re-description of Plethodontohyla laevis (Boettger, 1913) and transfer of Rhombophryne alluaudi (Mocquard, 1901) to the genus Plethodontohyla (Amphibia, Microhylidae, Cophylinae). Zoosystematics and Evolution, 94(1), 109–135. https://doi.org/10.3897/zse.94.14698
  • Bruford, M. W., Hanotte, O., Brookfield, J. F. Y., & Burke, T. (1992). Single-locus and multilocus DNA fingerprinting. In A. R. Hoelzel (Ed.), Molecular Genetic Analyses of Populations – A Practical Approach (pp. 225–269). IRL Press.
  • Crottini, A., Rosa, G. M., Penny, S. G., Cocca, W., Holderied, M. W., Rakotozafy, L. M. S., & Andreone, F. (2020). A new stump-toed frog from the transitional forests of NW Madagascar (Anura, Microhylidae, Cophylinae, Stumpffia)). ZooKeys, 933, 139–164. https://doi.org/10.3897/zookeys.933.47619
  • D'Cruze, N., Köhler, J., Vences, M., & Glaw, F. (2010). A new fat fossorial frog (Microhylidae: Cophylinae: Rhombophryne) from the rainforest of the Forêt d’Ambre Special Reserve, northern Madagascar. Herpetologica, 66(2), 182–191. https://doi.org/10.1655/09-008R1.1
  • Frost, D. R., Grant, T., Faivovich, J., Bain, R. H., Haas, A., Haddad, C. F. B., DE Sá, R. O., Channing, A. L. A. N., Wilkinson, M. A. R. K., Donnellan, S. C., Raxworthy, C. J., Campbell, J. A., Blotto, B. L., Moler, P. A. U. L., Drewes, R. C., Nussbaum, R. A., Lynch, J. D., Green, D. M., & Wheeler, W. C. (2006). The amphibian tree of life. Bulletin of the American Museum of Natural History, 297, 1–370. https://doi.org/10.1206/0003-0090(2006)297[0001:TATOL2.0.CO;2]
  • Glaw, F., Köhler, J., & Vences, M. (2010). A new fossorial frog, genus Rhombophryne, from Nosy Mangabe Special Reserve, Madagascar. Zoosystematics and Evolution, 86(2), 235–243. https://doi.org/10.1002/zoos.201000006
  • Glaw, F., & Vences, M. (2007). A field guide to the amphibians and reptiles of Madagascar (3rd ed.). Vences & Glaw Verlag.
  • Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.
  • Hime, P. M., Lemmon, A. R., Lemmon, E. C. M., Prendini, E., Brown, J. M., Thomson, R. C., Kratovil, J. D., Noonan, B. P., Pyron, R. A., Peloso, P. L. V., Kortyna, M. L., Keogh, J. S., Donnellan, S. C., Mueller, R. L., Raxworthy, C. J., Kunte, K., Ron, S. R., Das, S., Gaitonde, N., … Weisrock, D. W. (2021). Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life. Systematic Biology, 70(1), 49–66. https://doi.org/10.1093/sysbio/syaa034
  • Huelsenbeck, J. P., Ronquist, F., Nielsen, R., & Bollback, J. P. (2001). Bayesian inference of phylogeny and its impact on evolutionary biology. Science (New York, N.Y.), 294(5550), 2310–2314.
  • Katoh, K., & Standley, D. M. (2013). MAFFT Multiple Sequence Alignment Software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30(4), 772–780.
  • Koo, M. S., Vredenburg, V. T., Gross, J., Spencer, C. L., Tunstall, T., Wake, D. B. (2013). Visualizing AmphibiaWeb data with continuous cartograms - AmphibiaWeb: Information on amphibian biology and conservation. http://amphibiaweb.org/ (accessed 15th March 2021).
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6), 1547–1549.
  • Lambert, S. M., Hutter, C. R., & Scherz, M. D. (2017). Diamond in the rough: A new species of fossorial diamond frog (Rhombophryne) from Ranomafana National Park, southeastern Madagascar. Zoosystematics and Evolution, 93(1), 143–155. https://doi.org/10.3897/zse.93.10188
  • Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., & Calcott, B. (2017). PartitionFinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution, 34(3), 772–773.
  • Miller, M. A., Pfeiffer, W., & Schwartz, T. (2010 Creating the CIPRES science gateway for inference of large phylogenetic trees [Paper presentation]. Gateway Computing Environments Workshop (GCE), New Orleans, LA. November). (pp. 1–8)
  • Moat, J., & Smith, P. (2007). Atlas of the vegetation of Madagascar (Atlas de La Vegetation de Madagascar). Royal Botanic Gardens.
  • Muñoz-Pajares, A. J., Belluardo, F., Cocca, W., Crottini, A. (2019). PipeLogeny: An automated pipeline for phylogenetic reconstruction. https://sites.google.com/site/pipelogenydownload/ (accessed 15th February 2021).
  • Padial, J. M., Miralles, A., De la Riva, I., & Vences, M. (2010). The integrative future of taxonomy. Frontiers in Zoology, 7, 16.
  • Peloso, P. L. V., Frost, D. R., Richards, S. J., Rodrigues, M. T., Donnellan, S., Matsui, M., Raxworthy, C. J., Biju, S. D., Lemmon, E. M., Lemmon, A. R., & Wheeler, W. C. (2016). The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae). Cladistics: The International Journal of the Willi Hennig Society, 32(2), 113–140. https://doi.org/10.1111/cla.12118
  • Perl, R. G. B., Nagy, Z. T., Sonet, G., Glaw, F., Wollenberg, K. C., & Vences, M. (2014). DNA barcoding Madagascar’s amphibian fauna. Amphibia-Reptilia, 35(2), 197–206. https://doi.org/10.1163/15685381-00002942
  • R Core Team (2020). R: a language and environment for statistical computing. https://www.R-project.org/ (accessed 15th February 2021).
  • Rabosky, D. L. (2015). No substitute for real data: A cautionary note on the use of phylogenies from birth-death polytomy resolvers for downstream comparative analyses. Evolution; International Journal of Organic Evolution, 69(12), 3207–3216. https://doi.org/10.1111/evo.12817
  • Rakotoarison, A., Crottini, A., Müller, J., Rödel, M. O., Glaw, F., & Vences, M. (2015). Revision and phylogeny of narrow-mouthed treefrogs (Cophyla) from northern Madagascar: Integration of molecular, osteological, and bioacoustic data reveals three new species. Zootaxa, 3937(1), 61–89.
  • Rakotoarison, A., Scherz, M. D., Glaw, F., Köhler, J., Andreone, F., Franzen, M., … Vences, M. (2017). Describing the smaller majority: Integrative taxonomy reveals twenty-six new species of tiny microhylid frogs (genus Stumpffia) from Madagascar. Vertebrate Zoology, 67, 271–398.
  • Rambaut, A. (2009). FigTree (1.3.1). http://tree.bio.ed.ac.uk/software/figtree/ (accessed 15th February 2021).
  • Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67(5), 901–904.
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3), 539–542. https://doi.org/10.1093/sysbio/sys029
  • Rosa, G. M., Andreone, F., Crottini, A., Hauswaldt, J. S., Noël, J., Rabibisoa, N. H., Randriambahiniarime, M. O., Rebelo, R., & Raxworthy, C. J. (2012). The amphibians of the relict Betampona low-elevation rainforest, eastern Madagascar: An application of the integrative taxonomy approach to biodiversity assessments. Biodiversity and Conservation, 21(6), 1531–1559. https://doi.org/10.1007/s10531-012-0262-x
  • Rosa, G. M., Crottini, A., Noël, J., Rabibisoa, N., Raxworthy, C. J., & Andreone, F. (2014). A new phytotelmic species of Platypelis (Microhylidae: Cophylinae) from the Betampona Reserve, eastern Madagascar. Salamandra, 50, 201–214.
  • Scherz, M. D. (2020). Diamond frogs forever: A new species of Rhombophryne Boettger, 1880 (Microhylidae, Cophylinae) from Montagne d’Ambre National Park, northern Madagascar. Zoosystematics and Evolution, 96(2), 313–323. https://doi.org/10.3897/zse.96.51372
  • Scherz, M. D., Glaw, F., Vences, M., Andreone, F., & Crottini, A. (2016a). Two new species of terrestrial microhylid frogs (Microhylidae: Cophylinae: Rhombophryne) from northeastern Madagascar. Salamandra, 52, 91–106.
  • Scherz, M. D., Hawlitschek, O., Andreone, F., Rakotoarison, A., Vences, M., & Glaw, F. (2017). A review of the taxonomy and osteology of the Rhombophryne serratopalpebrosa species group (Anura: Microhylidae) from Madagascar, with comments on the value of volume rendering of micro-CT data to taxonomists. Zootaxa, 4273(3), 301–340.
  • Scherz, M. D., Hutter, C. R., Rakotoarison, A., Riemann, J. C., Rödel, M.-O., Ndriantsoa, S. H., Glos, J., Hyde Roberts, S., Crottini, A., Vences, M., & Glaw, F. (2019). Morphological and ecological convergence at the lower size limit for vertebrates highlighted by five new miniaturised microhylid frog species from three different Madagascan genera. PLoS One, 14(3), e0213314. https://doi.org/10.1371/journal.pone.0213314
  • Scherz, M. D., Rakotoarison, A., Hawlitschek, O., Vences, M., & Glaw, F. (2015a). Leaping towards a saltatorial lifestyle? An unusually long-legged new species of Rhombophryne (Anura, Microhylidae) from the Sorata massif in northern Madagascar. Zoosystematics and Evolution, 91(2), 105–114. https://doi.org/10.3897/zse.91.4979
  • Scherz, M. D., Ruthensteiner, B., Vences, M., & Glaw, F. (2014). A new microhylid frog, genus Rhombophryne, from northeastern Madagascar, and a re-description of R. serratopalpebrosa using micro-computed tomography. Zootaxa, 3860(6), 547–560. https://doi.org/10.11646/zootaxa.3860.6.3
  • Scherz, M. D., Ruthensteiner, B., Vieites, D. R., Vences, M., & Glaw, F. (2015b). Two new microhylid frogs of the genus Rhombophryne with superciliary spines from the Tsaratanana Massif in northern Madagascar. Herpetologica, 71(4), 310–321. https://doi.org/10.1655/HERPETOLOGICA-D-14-00048
  • Scherz, M. D., Vences, M., Rakotoarison, A., Andreone, F., Köhler, J., Glaw, F., & Crottini, A. (2016b). Reconciling molecular phylogeny, morphological divergence and classification of Madagascan narrow-mouthed frogs (Amphibia: Microhylidae). Molecular Phylogenetics and Evolution, 100, 372–381. https://doi.org/10.1016/j.ympev.2016.04.019
  • Tu, N., Yang, M., Liang, D., & Zhang, P. (2018). A large-scale phylogeny of Microhylidae inferred from a combined dataset of 121 genes and 427 taxa. Molecular Phylogenetics and Evolution, 126, 85–91.
  • Vences, M., & Glaw, F. (2003). New microhylid frog (Plethodontohyla) with a supraocular crest from Madagascar. Copeia, 2003, 789–793.
  • Vences, M., Kosuch, J., Glaw, F., Böhme, W., & Veith, M. (2003). Molecular phylogeny of hyperoliid treefrogs: Biogeographic origin of Malagasy and Seychellean taxa and re-analysis of familial paraphyly. Journal of Zoological Systematics and Evolutionary Research, 41(3), 205–215. https://doi.org/10.1046/j.1439-0469.2003.00205.x
  • Vieites, D. R., Wollenberg, K. C., Andreone, F., Köhler, J., Glaw, F., & Vences, M. (2009). Vast underestimation of Madagascar’s biodiversity evidenced by an integrative amphibian inventory. Proceedings of the National Academy of Sciences of the United States of America, 106(20), 8267–8272.
  • Wollenberg, K. C., Vieites, D. R., van der Meijden, A., Glaw, F., Cannatella, D. C., & Vences, M. (2008). Patterns of endemism and species richness in Malagasy cophyline frogs support a key role of mountainous areas for speciation. Evolution; International Journal of Organic Evolution, 62(8), 1890–1907. https://doi.org/10.1111/j.1558-5646.2008.00420.x
  • Zimkus, B. M., Lawson, L. P., Barej, M. F., Barratt, C. D., Channing, A., Dash, K. M., Dehling, J. M., Du Preez, L., Gehring, P.-S., Greenbaum, E., Gvoždík, V., Harvey, J., Kielgast, J., Kusamba, C., Nagy, Z. T., Pabijan, M., Penner, J., Rödel, M.-O., Vences, M., & Lötters, S. (2017). Leapfrogging into new territory: How Mascarene ridged frogs diversified across Africa and Madagascar to maintain their ecological niche. Molecular Phylogenetics and Evolution, 106, 254–269. https://doi.org/10.1016/j.ympev.2016.09.018

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.