NATIVE MICHIGAN PLANTS STIMULATE SOIL MICROBIAL SPECIES CHANGES AND PAH REMEDIATION AT A LEGACY STEEL MILL

REFERENCES

• Adler , P R , Arora , R , El Ghaouth , A , Glenn , D M and Solar , J M . 1994 . Bioremediation of phenolic compounds from the water with plant root surface peroxidases . J Environ Qual. , 23 : 1113 – 1117 .
   PubMed Web of Science ®Google Scholar
• Alexander , M. 2000 . Aging, bioavailability, and overestimation of risk from environmental pollutants . Environ Sci Technol. , 34 : 4259 – 4265 .
   Web of Science ®Google Scholar
• Bacilio-Jiménez , M , Aguilar-Flores , S , Ventura-Zapata , E , Pérez-Campos , E , Bouquelet , S and Zenteno , E . 2003 . Chemical characterization of root exudates from rice (Oryza sativa) and their effects on the chemotactic response of endophytic bacteria . Plant Soil. , 249 : 271 – 277 .
   Web of Science ®Google Scholar
• Badri , D , Loyola-Vargas , V , Broeckling , C , De-la-Peña , C , Jasinski , M , Santelia , D , Martinoia , E , Lloyd , W , Sumner , L , Banta , L , Frank Stermitz , F and Vivanco , J . 2008 . Altered profile of secondary metabolites in the root exudates of Arabidopsis ATP-binding cassette transporter mutants . Plant Physiol. , 146 : 762 – 771 .
   PubMed Web of Science ®Google Scholar
• Bais , H P , Park , S-W , Weir , T L , Callaway , R M and Vivanco , J M . 2004 . How plants communicate using the underground information superhighway . Trends Plant Sci. , 9 : 26 – 32 .
   PubMed Web of Science ®Google Scholar
• Banks , M K , Lee , E and Schwab , A P . 1999 . Evaluation of dissipation mechanisms for benzoo[a]pyrene in the rhizosphere of tall fescue . J Environ Qual. , 28 : 294 – 298 .
   Web of Science ®Google Scholar
• Bastiaens , L , Springael , D , Wattiau , P , Harms , H , Dewachter , R , Verachter , H and Diels , L . 2000 . Isolation of adherent polycyclic aromatic hydrocarbon (PAH)- degrading bacteria using PAH-sorbing carriers . Appl Environ Microbiol. , 66 : 1834 – 1843 .
   PubMed Web of Science ®Google Scholar
• Binet , P , Portal , J and Leyva , C . 2000 . Dissipation of 3–6-ring polycyclic aromatic hydrocarbons in the rhizosphere of ryegrass . Soil Biol Biochem. , 32 : 2011 – 2017 .
   Web of Science ®Google Scholar
• Boyle , J J and Shann , J R . 1998 . The influence of planting and soil characteristics on mineralization of 2,4,5-T in rhizosphere soil . J Environ Qual. , 27 : 704 – 709 .
   Web of Science ®Google Scholar
• Broeckling , C , Broz , A , Bergelson , J , Manter , D and Vivanco , J . 2008 . Root exudates regulate soil fungal community composition and diversity . Appl Environ Microbiol. , 74 : 738 – 744 .
   PubMed Web of Science ®Google Scholar
• Cheng , W , Zhang , Q , Coleman , D , Carroll , C R and Hoffman , C A . 1996 . Is available carbon limiting microbial growth in the rhizosphere? . Soil Biol Biochem. , 28 : 1283 – 1288 .
   Web of Science ®Google Scholar
• Connors , M A and Barnsley , E A . 1982 . Naphthalene plasmids in pseudomonads . J Bacteriol. , 149 : 1096 – 1101 .
   PubMed Web of Science ®Google Scholar
• Dakora , F D and Phillips , D A . 2002 . Root exudates as mediators of mineral acquisition in low-nutrient environments. Plant and Soil . 245 : 35 – 47 .
   Google Scholar
• Dayakar , V and Vivanco , J . 2009 . Regulation and function of root exudates. Plant, Cell Environ . 32 : 666 – 681 .
   Google Scholar
• Donnelly , P K , Hedge , R S and Flectcher , R S . 1994 . Growth of PCB-degrading bacteria on compounds from photosynthetic plants . Chemosphere. , 28 : 981 – 988 .
   Web of Science ®Google Scholar
• DuTeau , N M , Rogers , J D , Bartholomay , C T and Reardon , K F . 1998 . Species-specific oligonucleotides for enumeration of Pseudomonas putida F1, Burkholderia sp. strain JS150, and Bacillus subtilis ATCC 7003 in biodegradation experiments . Appl Environ Microbiol. , 64 : 4994 – 4999 .
   PubMed Web of Science ®Google Scholar
• Fierer , N and Jackson , R B . 2006 . The diversity and biogeography of soil bacterial communities . Proc Natl Acad Sci USA. , 103 : 626 – 631 .
   PubMed Web of Science ®Google Scholar
• Fletcher , J S and Hegde , R S . 1995 . Release of phenols by perennial plant roots and their importance in bioremediation . Chemosphere. , 31 : 3009 – 3016 .
   Web of Science ®Google Scholar
• Flynn , S J , Löffler , F E and Tiedje , J M . 2000 . Microbial community changes associated with a shift from reductive dechlorination of PCE to reductive dechlorination of cis-DCE and VC . Environ Sci Technol. , 34 : 1056 – 1061 .
   Web of Science ®Google Scholar
• Grayson , S , Wang , S , Campbell , C and Edwards , A . 1998 . Selective influence of plant species on microbial diversity in the rhizosphere . Soil Biol Biochem. , 30 : 369 – 378 .
   Web of Science ®Google Scholar
• Haby , P A and Crowley , D E . 1998 . Biodegradation of 3-chlorobenzoate as affected by rhizodeposition and selected carbon substrates . J Environ Qual. , 25 : 304 – 310 .
   Web of Science ®Google Scholar
• Haichar , F , Marol , C , Berge , O , Rangel-Castro , J , Prosser , J , Balesdent , J , Heulin , T and Achouak , W . 2008 . Plant host habitat and root exudates shape soil bacterial community structure . ISME J. , 2 : 1221 – 1230 .
   PubMed Web of Science ®Google Scholar
• Hartwig , U A , Joseph , C M and Phillips , D A . 1991 . Flavonoids released naturally from alfalfa seeds enhance growth rate of Rhizobium meliloti . Plant Physiol. , 95 : 797 – 803 .
   PubMed Web of Science ®Google Scholar
• Ho , C H and Banks , M K . 2006 . Degradation of polycyclic aromatic hydrocarbons in the rhizosphere of Festuca arundinacea and associated microbial community changes . Bioremediation , 10 : 93 – 104 .
   Google Scholar
• Hutchinson , S L , Schwab , A P and Banks , M K . 2001 . Phytoremediation of aged petroleum sludge: Effect of irrigation techniques and scheduling . J Environ Qual. , 30 : 1516 – 1522 .
   PubMed Web of Science ®Google Scholar
• Jimenez , L , Breen , A , Thomas , N , Federle , T W and Sayler , G S . 1991 . Mineralization of linear alkylbenzene sulfonate by a four-member aerobic bacterial consortium . Appl Environ Microbiol. , 57 : 1566 – 1569 .
   PubMed Web of Science ®Google Scholar
• Joner , E J , Corgie , S C , Amellal , N and Leyval , C . 2000 . Nutritional constraints to degradation of polycyclic aromatic hydrocarbons in a simulated rhizosphere . Soil Biol Biochem. , 34 : 859 – 864 .
   Web of Science ®Google Scholar
• Jones , D L and Brassington , D S . 1998 . Sorption of organic acids in acid soils and its implications in the rhizosphere . Eur J Soil Sci. , 49 : 447 – 455 .
   Web of Science ®Google Scholar
• Jones , D L , Hodge , A and Kuzyakov , Y . 2004 . Plant and mycorrhizal regulation of rhizodeposition . New Phytol. , 163 : 459 – 480 .
   PubMed Web of Science ®Google Scholar
• Kamath , R , Schnoor , J L and Alvarez , P JJ . 2004 . Effects of plant derived substrates on expression of catabolic genes using a nah-lux reporter . Environ Sci Technol. , 38 : 1740 – 1745 .
   PubMed Web of Science ®Google Scholar
• Kidda , P , Barcelób , J , Bernalc , M , Navari-Izzod , F , Poschenriederb , C , Shileve , S , Clementec , R and Monterrosof , C . 2009 . Trace element behaviour at the root–soil interface: Implications in phytoremediation . Environ Exp Bot. , 67 : 243 – 259 .
   Web of Science ®Google Scholar
• Liebeg , E W and Cutright , T J . 1999 . The investigation of enhanced bioremediation through the addition of macro and micronutrients in a PAH contaminated soil . Int. Biodeterior Biodegrad. , 44 : 55 – 64 .
   Web of Science ®Google Scholar
• Liste , H-H and Alexander , M . 1999 . Rapid screening of plants promoting phenanthrene degradation . J Environ Qual. , 28 : 1376 – 1377 .
   Web of Science ®Google Scholar
• Liste , H-H and Prutz , I . 2006 . Plant performance, dioxygenase-expressing rhizosphere bacteria, and biodegradation of weathered hydrocarbons in contaminated soil . Chemosphere. , 62 : 1411 – 1420 .
   PubMed Web of Science ®Google Scholar
• Liu , W-T , Marsh , T , Cheng , H and Forney , L J . 1997 . Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA . Appl Environ Microbiol. , 63 : 4516 – 4522 .
   PubMed Web of Science ®Google Scholar
• Miya , R K and Firestone , M K . 2001 . Enhanced phenanthrene biodegradation in soils by slender oat root exudates and root debris . J Environ. Qual. , 30 : 1911 – 1918 .
   PubMed Web of Science ®Google Scholar
• Ortega-Calvo , J J , Marchenko , A I , Vorobyov , A V and Borovick , R V . 2003 . Chemotaxis in polycyclic aromatic hydrocarbon-degrading bacteria isolated from coal-tar and oil-polluted rhizospheres . FEMS Microbiol Ecol. , 44 : 373 – 381 .
   PubMed Web of Science ®Google Scholar
• Parrish , Z D , Banks , K M and Schwab , P A . 2005 . Effect of root death and decay on dissipation of polycyclic aromatic hydrocarbons in the rhizosphere of yellow sweet clover and tall fescue . J Environ Qual. , 34 : 207 – 216 .
   PubMed Web of Science ®Google Scholar
• Reddy , K. 2010 . Technical challenges to In-situ remediation of polluted sites . Geotech Geol Eng , 28 : 211 – 221 .
   Google Scholar
• Reilley , K A , Banks , M K and Schwab , A P . 1996 . Dissipation of polycyclic aromatic hydrocarbons in the rhizosphere . J Environ Qual. , 25 : 212 – 219 .
   Web of Science ®Google Scholar
• Rentz , J A , Alvarez , P JJ and Schnoor , J L . 2004 . Repression of Pseudomonas putida phenanthrene- degrading activity by plant extracts and exudates . Environ Microbiol. , 6 : 574 – 583 .
   PubMed Web of Science ®Google Scholar
• Rentz , J A , Alvarez , P JJ and Schnoor , J L . 2005 . Benzoo[a]pyrene co-metabolism in the presence of plant root extracts and exudates: Implications for phytoremediation . Environ Pollut. , 136 : 477 – 484 .
   PubMed Web of Science ®Google Scholar
• Romantschuk , M , Sarand , I , Petanen , T , Peltola , R , Jonsson-Vihanne , M , Koivula , T , Yrjala , K and Haahtela , K . 2000 . Means to improve the effect of in situ bioremediation of contaminated soil: an overview of novel approaches . Environ Pollut. , 107 : 179 – 185 .
   PubMed Web of Science ®Google Scholar
• Roy , S , Labelle , S , Mehta , P , Mihoc , A , Fortin , N , Masson , C , Leblanc , R , Chateauneuf , G , Sura , C , Gallipeau , C , Olsen , C , Delisle , S , Labrecque , M and Greer , C W . 2005 . Phytoremediation of heavy metal and PAH-contaminated brownfield sites . Plant Soil. , 272 : 277 – 290 .
   Web of Science ®Google Scholar
• Rugh , C L , Susilawati , E , Kravchenko , A N and Thomas , J C . 2005 . Biodegrader metabolic expansion during polyaromatic hydrocarbon rhizoremediation . Z. Naturforsch. C. Biosci. , 60c : 331 – 339 .
   Google Scholar
• Schaffner , A , Messner , B , Langebartels , C and Sandermann , H . 2002 . Genes and enzymes for in planta phytoremediation of air, water, and soil . Acta Biotechnol. , 22 : 141 – 152 .
   Google Scholar
• Schnoor , J L , Licht , L A , McCutcheon , S C , Wolfe , N L and Carreira , L . 1995 . Phytoremediation of organic and nutrient contaminants . Environ Sci Technol. , 29 : 318 – 323 .
   PubMed Web of Science ®Google Scholar
• Senior , E , Bull , A T and Slater , J H . 1976 . Enzyme evolution in a microbial community growing on the herbicide Dalapon . Nature. , 263 : 476 – 479 .
   PubMed Web of Science ®Google Scholar
• Siciliano , S D and Germida , J J . 1998 . Mechanisms of phytoremediation: Biochemical and ecological interactions between plants and bacteria . Environ Rev. (Ottawa, ON, Can.) , 6 : 65 – 79 .
   Google Scholar
• Siciliano , S D , Germida , J J , Banks , K and Greer , C W . 2003 . Changes in microbial community composition and function during a polyaromatic hydrocarbon phytoremediation field trial . Appl Environ Microbiol. , 69 : 483 – 489 .
   PubMed Web of Science ®Google Scholar
• Steer , J and Harris , J A . 2000 . Shifts in the microbial community in rhizosphere and non-rhizosphere soils during the growth of Agrostis stolonifera . Soil Biol Biochem. , 32 : 869 – 878 .
   Web of Science ®Google Scholar
• Stieber , M , Haeseler , F , Werner , P and Frimmel , F H . 1994 . A rapid screening method for microorganisms degrading polycyclic aromatic hydrocarbons in microplates . Appl Microbiol Biotechnol. , 40 : 753 – 755 .
   Web of Science ®Google Scholar
• Thomas , J C and Dabkowski , R T . 2011 . Glucose and plant exudate enhanced enumeration of polycyclic aromatic hydrocarbon - degrading bacteria . Can J Microbiol. , 57 : 1067 – 1072 .
   PubMed Web of Science ®Google Scholar
• Van Overbeek , L S and Van Elase , J D . 1995 . Root exudate-induced promoter activity in Pseudomonas fluorescens mutants in the wheat rhizosphere . Appl Environ Microbiol. , 61 : 890 – 898 .
   PubMed Web of Science ®Google Scholar
• Wrenn , B A and Venosa , A D . 1996 . Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most-probable-number procedure . Can J Microbiol. , 42 : 252 – 258 .
   PubMed Web of Science ®Google Scholar
• Yeats , C , Gillings , M R , Davison , A D , Altavilla , N and Veal , D A . 1998 . Methods for microbial extraction from soil for PCR amplification . Biol Proced. Online , 1 : 40 – 47 .
   PubMedGoogle Scholar
• Yoshitomi , K J and Shann , J . 2001 . Corn (Zea mays L.) root exudates and their impact on 14C-pyrene mineralization . Soil Biol Biochem. , 33 : 1769 – 1776 .
   Web of Science ®Google Scholar
• Zheng , X Y and Sinclair , J B . 1996 . Chemotactic response of Bacillus megaterium strain B153–2-2 to soybean root and seed exudate . Physiol Mol Plant Pathol. , 48 : 21 – 35 .
   Web of Science ®Google Scholar
• Zimmer , D , Baum , C , Leinweber , P , Hrynkiewicz , K and Meissner , R . 2009 . Associated bacteria increase the phytoextraction of cadmium and zinc from a metal contaminated soil by mycorrhizal willows Int J Phytoremediation . 11 : 200 – 213 .
   Google Scholar