Advanced search
Publication Cover
Nucleosides, Nucleotides & Nucleic Acids Volume 38, 2019 - Issue 5
Submit an article Journal homepage
92
Views
5
CrossRef citations to date
0
Altmetric
Articles

Visual representation of DNA sequences for exon detection using non-parametric spectral estimation techniques

Ahmed M. DessoukyAl Alson Academy, Cairo, Egypt; Correspondence[email protected]
,
Taha E. TahaDepartment of Electronics and Electrical Communication Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt.;
,
Mohamed M. DessoukyDepartment of Computer Science and Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt;
,
Ashraf A. EltholthNational Telecommunication Institute, Cairo, Egypt;
,
Emadeldeen HassanDepartment of Electronics and Electrical Communication Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt.; ;Department of computing science, Umeå University, Sweden
&
Fathi E. Abd El-SamieDepartment of Electronics and Electrical Communication Engineering, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt.;
Pages 321-337 | Received 17 Jun 2018, Accepted 11 Oct 2018, Published online: 12 Mar 2019

References

  • Attwood, T.; Miller, C. Progress in Bioinformatics and the Importance of Being Earnest. Biotechnol Annu Rev. 2002, 8, 1–54.
  • Luscombe, N.M.; Greenbaum, D.; Gerstein, M. What is Bioinformatics? A Proposed Definition and Overview of the Field. Methods Inf. Med. 2001, 40, 346–358.
  • Anastassiou, D. Genomic Signal Processing. IEEE Signal Process. Mag. 2001, 18, 8–20.
  • El-Badawy, I. M.; Gasser, S.; Aziz, A. M. On the Use of Pseudo-EIIP Mapping Scheme for Identifying Exons Locations in DNA Sequences. IEEE International Conference on Signal and Image Processing Applications (ICSIPA), 2015.
  • Inbamalar, T.; Sivakumar, R. Study of DNA Sequence Analysis Using DSP Techniques. J. Autom. Control Eng. 2013, 1, 336–342.
  • Saberkari, H.; Shamsi, M.; Heravi, H.; Sedaaghi, M. H. A Fast Algorithm for Exonic Regions Prediction in DNA Sequences. J. Med. Signals Sensors 2013, 3, 139–147.
  • Saberkari, H.; Shamsi, M.; Sedaaghi, M.; Golabi, F. Prediction of Protein Coding Regions in DNA Sequences Using Signal Processing Methods. IEEE Symposium on Industrial Electronics and Applications (ISIEA), 2012, pp. 355–360.
  • Berger, J.; Mitra, S.; Astola, J. Power Spectrum Analysis for DNA Sequences. Proceedings of Seventh International Symposium on Signal Processing and Its Applications, IEEE, 2003, pp. 29–32.
  • Abo-Zahhad, M.; Ahmed, S.M.; Abd-Elrahman, S.A. Genomic Analysis and Classification of Exon and Intron Sequences Using DNA Numerical Mapping Techniques. Int. J. Inf. Technol. Comput. Sci. (IJITCS) 2012, 4, 22–36.
  • Mabrouk, M. S. A Study of the Potential of EIIP Mapping Method in Exon Prediction Using the Frequency Domain Techniques. Am. J. Biomed. Eng. 2012, 2, 17–22.
  • Nair, A.S.; Sreenadhan, S.P. A Coding Measure Scheme Employing Electron-Ion Interaction Pseudopotential (EIIP). Bioinformation 2006, 1, 197–202
  • Yin, C.; Yau, S.S.-T. Numerical Representation of DNA Sequences Based on Genetic Code Context and Its Applications in Periodicity Analysis of Genomes. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008, pp. 223–227.
  • Bai Arniker, S.; Kwan, H.K. Advanced numerical representation of DNA sequences. International Conference on Bioscience, Biochemistry and Bioinformatics IPCBEE. 2012, vol. 31, pp. 2–5.
  • Wassfy, H. M.; Salem, M. L.; Abdelnaby, M. M.; Mabrouk, M. S.; Zidan, A. Advanced DNA Mapping Schemes for Exon Prediction Using Digital Filters. Am. J. Biomed. Eng. 2016, 6, 25–31.
  • Nazib, A.; Amimul Ahsan, A.; Rahman, D. Evaluation of Information Theory in Analyzing DNA Sequences. Int. J. Comput. Inf. Technol. 2012, 2, 44–46.
  • Wąż, P.; Bielińska-Wąż, D. Non-standard Similarity/Dissimilarity Analysis of DNA Sequences, Genomics 2014, 104, 464–471.
  • Bielińska-Wąż, D. Graphical and Numerical Representations of DNA Sequences Statistical Aspects of Similarity. J. Math. Chem. 2011, 49, 2345–2407.
  • Randić, M.; Novič, M.; Plavšić, D. Milestones in Graphical Bioinformatics. Int. J. Quantum Chem. 2013, 113, 2413–2446.
  • https://srogic.wordpress.com/datasets/hmr195-dataset/.
  • Proakis, J. G.; Rader, C. M.; Ling, F.; Nikias, C. L. Advanced Digital Signal Processing. Maxwell Macmillan International: New York, 1992.
  • Orfanidis, S. J. Optimum Signal Processing: An Introduction, McGraw-Hill Book Company: New York, 1990.
  • Kalouptsidis, N. Signal Processing Systems, Theory and Design, Wiley: New York, 1997.
  • Zelniker, G.; Taylor, F. J. Advanced Digital Signal Processing: Theory and Applications, Marcel Dekker, Inc., New York, 1994.
  • Robinson, E. A. A Historical Perspective of Spectrum Estimation, Proceedings of the IEEE, Sept. 1982, Vol.70, No.9, pp. 885–907.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.