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Innovative array-based assay for omics pattern in melanoma

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References

  • Ancuceanu, R.; Neagu, M. Immune based Therapy for Melanoma. Ind. J. Med. Res. 2016, 143(2), 135–144.
  • Gandolfi, G.; Dallaglio, K.; Longo, C.; Moscarella, E.; Lallas, A.; Alfano, R.; Argenziano, G.; Ciarrocchi, A. Contemporary and Potential Future Molecular Diagnosis of Melanoma. Expert Rev. Mol. Diagn. 2016, 16(9), 975–985.
  • Blumenberg, M. Skinomics: Past, Present and Future for Diagnostic Microarray Studies in Dermatology. Exp. Rev. Mol Diagn. 2013, 13(8), 885–894.
  • Bulman, A.; Neagu, M.; Constantin, C. Immunomics in Skin Cancer-improvement in Diagnosis, Prognosis and Therapy Monitoring, Curr Proteom. 2013, 10(3), 202–217.
  • Hua, L.; Zheng, W.Y.; Xia, H.; Zhou, P. Detecting the Potential Cancer Association or Metastasis by Multi-omics Data Analysis. Genet. Mol. Res. 2016, 15(3), 1–15.
  • Jiang, Y.; Shi, X.; Zhao, Q.; Krauthammer, M.; Rothberg, B.E.; Ma, S. Integrated Analysis of Multidimensional Omics Data on Cutaneous Melanoma Prognosis. Genomics 2016, 107(6), 223–230.
  • Jayawardana, K.; Schramm, S.J.; Haydu, L.; Thompson, J.F.; Scolyer, R.A.; Mann, G.J.; Müller, S.; Yang, J.Y. Determination of Prognosis in Metastatic Melanoma through Integration of Clinico-pathologic, Mutation, mRNA, microRNA, and Protein Information. Int. J. Cancer 2015, 136(4), 863–874.
  • Welinder, C.; Jönsson, G.; Ingvar, C.; Lundgren, L.; Olsson, H.; Breslin, T.; Végvári, A.; Laurell, T.; Rezeli, M.; Jansson, B.; Baldetorp, B.; Marko-Varga, G. Establishing a Southern Swedish Malignant Melanoma OMICS and Biobank Clinical Capability. Clin. Transl. Med. 2013, 2(1), 7.
  • Dummer, R.; Goldinger, S.M.; Paulitschke, V.; Levesque, M.P. Curing Advanced Melanoma by 2025. Curr. Opin. Oncol. 2015, 27(2), 125–127.
  • Tsimberidou, A.M.; Eggermont, A.M.; Schilsky, R.L. Precision Cancer Medicine: The Future is Now, Only Better. Am. Soc. Clin. Oncol. Educ. Book. 2014, 61–69.
  • Yoshikawa, S.; Kiyohara, Y.; Otsuka, M.; Kondou, R.; Nonomura, C.; Miyata, H.; Iizuka, A.; Ohshima, K.; Urakami, K.; Nagashima, T.; Kusuhara, M.; Sugino, T.; Mochizuki, T.; Yamaguchi, K.; Akiyama, Y. Multi-omics Profiling of Patients with Melanoma Treated with Nivolumab in Project HOPE. Anticancer Res. 2017, 37(3), 1321–1328.
  • Shtivelman, E.; Davies, M.Q.; Hwu, P.; Yang, J.; Lotem, M.; Oren, M.; Flaherty, K.T.; Fisher, D.E. Pathways and Therapeutic Targets in Melanoma. Oncotarget 2014, 5(7), 1701–1752.
  • Overwijk, W.W.; Wang, E.; Marincola, F.M.; Rammensee, H.G.; Restifo, N.P. Mining the Mutanome: Developing Highly Personalized Immunotherapies based On Mutational Analysis of Tumors. J. Immunother. Cancer. 2013, 1, 11.
  • Riegel, M. Human Molecular Cytogenetics: From Cells to Nucleotides. Genet Mol Biol. 2014, 37(1 Suppl), 194–209.
  • Przybytkowski, E.; Aguilar-Mahecha, A.; Nabavi, S.; Tonellato, P.J.; Basik, M. Ultradense Array CGH and Discovery of Micro-copy Number Alterations and Gene Fusions in the Cancer Genome. Meth. Mol Biol. 2013, 973, 15–38.
  • Urban, A.E.; Korbel, J.O.; Selzer, R.; Richmond, T.; Hacker, A.; Popescu, G.V.; Cubells, J.F.; Green, R.; Emanuel, B.S.; Gerstein, M.B.; Weissman, S.M.; Snyder, M. High-resolution Mapping of DNA Copy Alterations in Human Chromosome 22 using High-density Tiling Oligonucleotide Arrays. Proc. Natl. Acad. Sci., USA. 2006, 103( 12), 4534–4539.
  • Curtis, C.; Lynch, A.G.; Dunning, M.J.; Spiteri, I.; Marioni, J.C.; Hadfield, J.; Chin, S.F.; Brenton, J.D.; Tavare, S.; Caldas, C. The Pitfalls of Platform Comparison: DNA Copy Number Array Technologies Assessed. BMC Genom. 2009, 10, 588.
  • Oostlander, A.E.; Meijer, G.A.; Ylstra, B. Microarray-based Comparative Genomic Hybridization and its Applications in Human Genetics. Clin Genet. 2004, 66(6), 488–495.
  • Inaoka, K.; Inokawa, Y.; Nomoto, S. Genomic-Wide Analysis with Microarrays in Human Oncology. Microarrays (Basel). 2015, 4(4), 454–473.
  • Klopfleisch, R.; Weiss, A.T.; Gruber, A.D. Excavation of a Buried Treasure—DNA, mRNA, miRNA and Protein Analysis in Formalin Fixed, Paraffin Embedded Tissues. Histol. Histopathol. 2011, 26(6), 797–810.
  • Stanta, G.; Jahn, S.W.; Bonin, S.; Hoefler, G. Tumour Heterogeneity: Principles and Practical Consequences. Virchows Arch. 2016, 469(4), 371–384.
  • Nowak, N.J.; Miecznikowski, J.; Moore, S.R.; Gaile, D.; Bobadilla, D.; Smith, D.D.; Kernstine, K.; Forman, S.J.; Mhawech-Fauceglia, P.; Reid, M.; Stoler, D.; Loree, T.; Rigual, N.; Sullivan, M.; Weiss, L.M.; Hicks, D.; Slovak, M.L. Challenges in Array Comparative Genomic Hybridization for the Analysis of Cancer Samples. Genet. Med. 2007, 9(9), 585–595.
  • Ruiz, C.; Lenkiewicz, E.; Evers, L.; Holley, T.; Robeson, A.; Kiefer, J.; Demeure, M.J.; Hollingsworth, M.A.; Shen, M.; Prunkard, D.; Rabinovitch, P.S.; Zellweger, T.; Mousses, S.; Trent, J.M.; Carpten, J.D.; Bubendorf, L.; Von Hoff, D.; Barrett, M.T. Advancing a Clinically Relevant Perspective of the Clonal Nature of Cancer. Proc. Natl. Acad. Sci. U S A. 2011, 108(29), 12054–12059.
  • Wang, L.; Rao, M.; Fang, Y.; Hameed, M.; Viale, A.; Busam, K.; Jhanwar, S.C. A Genome-wide High-resolution Array-CGH Analysis of Cutaneous Melanoma and Comparison of Array-CGH to FISH in Diagnostic Evaluation. J. Mol. Diagn. 2013, 15(5), 581–591.
  • Heitzer, E.; Auer, M.; Gasch, C.; Pichler, M.; Ulz, P.; Hoffmann, E.M.; Lax, S.; Waldispuehl-Geigl, J.; Mauermann, O.; Lackner, C.; Höfler, G.; Eisner, F.; Sill, H.; Samonigg, H.;Pantel, K.; Riethdorf, S.; Bauernhofer, T.; Geigl, J.B.; Speicher, M.R. Complex Tumor Genomes Inferred from Single Circulating Tumor Cells by Array-CGH and Next-generation Sequencing. Cancer Res. 2013, 73(10), 2965–2975.
  • Zurac, S.; Negroiu, G.; Petrescu, S.; Andrei, R.; Tebeica, T.; Popp, C.; Musţată, R.; Neagu, M.; Constantin, C.; Solovan, C.; Chiţu, V.; Reboşapcă, A.; Andreescu, B.; Marinescu, I.; Stăniceanu, F. Spectrum of Morphologic Alterations of Regression in Cutaneous Melanoma—Potential for Improving Disease Prognosis. Rom. J. Intern. Med. 2012, 50(2), 145–153.
  • Tanase, C.P.; Albulescu, R.; Neagu, M. Application of 3D Hydrogel Microarrays in Molecular Diagnostics: Advantages and Limitations. Exp. Rev. Mol. Diagn. 2011, 11(5), 461–464.
  • Moore, D.A.; Pringle, J.H. Saldanha, G.S. Prognostic Tissue Markers in Melanoma. Histopathology 2012, 60(5), 679–689.
  • O’Hagan, R.C.; Brennan, C.W.; Strahs, A.; Zhang, X.; Kannan, K.; Donovan, M.; Cauwels, C.; Sharpless, N.E.; Wong, W.H.; Chin, L. Array Comparative Genome Hybridization for Tumor Classification and Gene Discovery in Mouse Models of Malignant Melanoma. Cancer Res. 2003, 63(17), 5352–5356.
  • Diaconeasa, A.; Boda, D.; Solovan, C.; Enescu, D.M.; Vîlcea, A.M.; Zurac, S. Histopathologic Features of Spitzoid Lesions in Different Age Groups. Rom. J. Morphol. Embryol. 2013, 54(1), 51–62.
  • Redon, S.; Guibourg, B.; Talagas, M.; Marcorelles, P.; Uguen, A. A Diagnostic Algorithm Combining Immunohistochemistry and Molecular Cytogenetics to Diagnose Challenging Melanocytic Tumors. Appl. Immunohistochem. Mol. Morphol. 2017, Mar 30, doi: 10.1097/PAI.0000000000000511. [Epub ahead of print]
  • Harvell, J.D.; Kohler, S.; Zhu, S.; Hernandez-Boussard, T.; Pollack, J.R.; van de Rijn, M. High-resolution Array-based Comparative Genomic Hybridization for Distinguishing Paraffin-embedded Spitz Nevi and Melanomas. Diagn. Mol. Pathol. 2004, 13(1), 22–25.
  • Ali, L.; Helm, T.; Cheney, R.; Conroy, J.; Sait, S.; Guitart, J.; Gerami, P. Correlating Array Comparative Genomic Hybridization Findings with Histology and Outcome in Spitzoid Melanocytic Neoplasms. Int. J. Clin. Exp. Pathol. 2010, 3(6), 593–599.
  • Mesbah Ardakani, N.; Thomas, C.; Robinson, C.; Mina, K.; Harvey, N.T.; Amanuel, B.; Wood, B.A. Detection of Copy Number Variations in Melanocytic Lesions Utilising Array Based Comparative Genomic Hybridisation Pathology. 2017, 49(3), 285–291.
  • Andrei, R.; Zurac, S.; Socoliuc, C.; Mandisodza, P.; Staniceanu, F. Problems of Differential Diagnosis in Melanoma Arising from Blue Naevus. Rom. J. Intern. Med. 2015, 53(1), 95–101.
  • Nedelcu, R.I.; Zurac, S.A.; Brînzea, A.; Cioplea, M.D.; Turcu, G.; Popescu, R.; Popescu, C.M.; Ion, D.A. Morphological Features of Melanocytic Tumors with Depigmented Halo: Review of the Literature and Personal Results. Rom. J. Morphol. Embryol. 2015, 56(2 Suppl), 659–663.
  • Wiesner, T.; Kutzner, H.; Cerroni, L.; Mihm, M.C. Jr.; Busam, K.J.; Murali, R. Genomic Aberrations in Spitzoid Melanocytic Tumours and Their Implications for Diagnosis, Prognosis and Therapy. Pathology 2016, 48(2), 113–131.
  • Birner, P.; Berghoff, A.S.; Dinhof, C.; Pirker, C.; Capper, D.; Schoppmann, S.F.; Petzelbauer, P.; von Deimling, A.; Berger, W.; Preusser, M. MAP Kinase Activity Supported by BRAF (V600E) Mutation Rather than Gene Amplification is Associated with ETV1 Expression in Melanoma Brain Metastases. Arch. Dermatol. Res. 2014, 306(10), 873–884.
  • Lázár, V. Characterization of Genetic Alterations in Primary Human Melanomas Carrying BRAF or NRAS Mutation. Magy. Onkol. 2013, 57(2), 96–99.
  • Rakosy, Z.; Ecsedi, S.; Toth, R.; Vizkeleti, L.; Hernandez-Vargas, H.; Lazar, V.; Emri, G.; Szatmari, I.; Herceg, Z.; Adany, R.; Balazs, M. Integrative Genomics Identifies Gene Signature Associated with Melanoma Ulceration. PLoS One. 2013, 8(1), e54958.
  • Baker, M.J.; Goldstein, A.M.; Gordon, P.L.; Harbaugh, K.S.; Mackley, H.B.; Glantz, M.J.; Drabick, J.J. An Interstitial Deletion within 9p21.3 and Extending Beyond CDKN2A Predisposes to Melanoma, Neural System Tumours and Possible Haematological Malignancies. J. Med. Genet. 2016, pii, jmedgenet-2015-103446.
  • Yang, X.R.; Brown, K.; Landi, M.T.; Ghiorzo, P.; Badenas, C.; Xu, M.; Hayward, N.K.; Calista, D.; Landi, G.; Bruno, W.; Bianchi-Scarrà, G.; Aguilera, P.; Puig, S.; Goldstein, A.M.; Tucker, M.A. Duplication of CXC Chemokine Genes on Chromosome 4q13 in a Melanoma-prone Family. Pigment Cell Melanoma Res. 2012, 25(2), 243–247.
  • Neagu, M.; Constantin, C.; Zurac, S. Immune Parameters in the Prognosis and Therapy Monitoring of Cutaneous Melanoma Patients: Experience, Role, and Limitations. Biomed. Res. Int. 2013, 107940.
  • Neagu, M.; Constantin, C.; Manda, G.; Margaritescu, I. Biomarkers of Metastatic Melanoma. Biomark. Med. 2009, 3(1), 71–89.
  • Neagu, M.; Constantin, C.; Longo, C. Chemokines in the Melanoma Metastasis Biomarkers Portrait. J. Immunoass. Immunochem. 2015, 36(6), 559–566.
  • Neagu, M.; Caruntu, C.; Constantin, C.; Boda, D.; Zurac, S.; Spandidos, D.A.; Tsatsakis, A.M. Chemically Induced Skin Carcinogenesis: Updates in Experimental Models (Review). Oncol Rep. 2016, 35(5), 2516–2528.
  • Namiki, T.; Tanemura, A.; Valencia, J.C.; Coelho, S.G.; Passeron, T.; Kawaguchi, M.; Vieira, W.D.; Ishikawa, M.; Nishijima, W.; Izumo, T.; Kaneko, Y.; Katayama, I.; Yamaguchi, Y.; Yin, L.; Polley, E.C.; Liu, H.;, Kawakami, Y.; Eishi, Y.; Takahashi, E.; Yokozeki, H.; Hearing, V.J. AMP Kinase-related kinase NUAK2 Affects Tumor Growth, Migration, and Clinical Outcome of Human Melanoma. Proc. Natl. Acad. Sci. USA, 2011, 108( 16), 6597–6602.
  • Namiki, T.; Yaguchi, T.; Nakamura, K.; Valencia, J.C.; Coelho, S.G.; Yin, L.; Kawaguchi, M.; Vieira, W.D.; Kaneko, Y.; Tanemura, A.; Katayama, I.; Yokozeki, H.; Kawakami, Y.; Hearing, V.J. NUAK2 Amplification Coupled with PTEN Deficiency Promotes Melanoma Development via CDK Activation. Cancer Res. 2015, 75(13), 2708–2715.
  • Nambiar, S.; Mirmohammadsadegh, A.; Hengge, U.R. Cutaneous Melanoma: Fishing with Chips. Curr. Mol. Med. 2008, 8(3), 235–243.

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