1,543
Views
10
CrossRef citations to date
0
Altmetric
Reports

Delineation of the frequency and boundary of chromosomal copy number variations in paediatric neuroblastoma

, ORCID Icon, ORCID Icon, , , , & show all
Pages 749-758 | Received 06 Oct 2017, Accepted 20 Dec 2017, Published online: 18 May 2018

References

  • Maris JM. Matthay KK. Molecular biology of neuroblastoma. J Clin Oncol. 1999;17:2264–2279. doi:10.1200/JCO.1999.17.7.2264. PMID:10561284
  • Matthay KK, Maris JM, Schleiermacher G, et al. Neuroblastoma. Nature reviews Disease Primers. 2016;2:16078. doi:10.1038/nrdp.2016.78. PMID:27830764
  • Colon NC, Chung DH. Neuroblastoma. Advances in Pediatrics. .2011;58:297–311. doi:10.1016/j.yapd.2011.03.011. PMID:21736987
  • Matthay KK, George RE, Yu AL. Promising therapeutic targets in neuroblastoma. Clin Cancer Res. 2012;18:2740–2753. doi:10.1158/1078-0432.ccr-11-1939. PMID:22589483
  • Janoueix-Lerosey I, Lequin D, Brugieres L, et al. Somatic and germline activating mutations of the ALK kinase receptor in neuroblastoma. Nature. 2008;455:967–970. doi:10.1038/nature07398. PMID:18923523
  • Mosse YP, Laudenslager M, Longo L, et al. Identification of ALK as a major familial neuroblastoma predisposition gene. Nature. 2008;455:930–935. doi:10.1038/nature07261. PMID:18724359
  • Chen Y, Takita J, Choi YL, et al. Oncogenic mutations of ALK kinase in neuroblastoma. Nature. 2008;455:971–974. doi:10.1038/nature07399. PMID:18923524
  • George RE, Sanda T, Hanna M, et al. Activating mutations in ALK provide a therapeutic target in neuroblastoma. Nature. 2008;455:975–978. doi:10.1038/nature07397. PMID:18923525
  • Mosse YP, Laudenslager M, Khazi D, et al. Germline PHOX2B mutation in hereditary neuroblastoma. Am J Hum Genet. 2004;75:727–730. doi:10.1086/424530. PMID:1182065
  • Cheung NK, Zhang J, Lu C, et al. Association of age at diagnosis and genetic mutations in patients with neuroblastoma. Jama. 2012;307:1062–1071. doi:10.1001/jama.2012.228. PMID:3527076
  • Molenaar JJ, Koster J, Zwijnenburg DA, et al. Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes. Nature. 2012;483:589–593. doi:10.1038/nature10910. PMID:22367537
  • Attiyeh EF, London WB, Mosse YP, et al. Chromosome 1p and 11q deletions and outcome in neuroblastoma. N Engl J Med. 2005;353:2243–2253. doi:10.1056/NEJMoa052399. PMID:16306521
  • Bown N, Cotterill S, Lastowska M, et al. Gain of chromosome arm 17q and adverse outcome in patients with neuroblastoma. N Engl J Med. 1999;340:1954–1961. doi:10.1056/nejm199906243402504. PMID:10379019
  • Pugh TJ, Morozova O, Attiyeh EF, et al. The genetic landscape of high-risk neuroblastoma. Nat Genet. 2013;45:279–284. doi:10.1038/ng.2529. PMID:3682833
  • Shaikh TH, Gai X, Perin JC, et al. High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications. Genome Res. 2009;19:1682–1690. doi:10.1101/gr.083501.108. PMID:2752118
  • Suenaga Y, Islam SM, Alagu J, et al. NCYM, a Cis-Antisense Gene of MYCN, Encodes a De Novo Evolved Protein That Inhibits GSK3beta Resulting in the Stabilization of MYCN in Human Neuroblastomas. PLoS Genet. 2014;10:e1003996. doi:10.1371/journal.pgen.1003996. PMID:3879166
  • Liu PY, Erriquez D, Marshall GM, et al. Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression. J Natl Cancer Inst. 2014;106: pii: dju113. doi:10.1093/jnci/dju113. PMID:24906397.
  • Weiss WA, Aldape K, Mohapatra G, et al. Targeted expression of MYCN causes neuroblastoma in transgenic mice. Embo J. 1997;16:2985–2995. doi:10.1093/emboj/16.11.2985. PMID:9214616
  • Defferrari R, Tonini GP, Conte M, et al. Concomitant DDX1 and MYCN gain in neuroblastoma. Cancer Lett. .2007;256:56–63. doi:10.1016/j.canlet.2007.05.010. PMID:17611020
  • Bell JL, Turlapati R, Liu T, et al. IGF2BP1 harbors prognostic significance by gene gain and diverse expression in neuroblastoma. J Clin Oncol. 2015;33:1285–1293. doi:10.1200/jco.2014.55.9880. PMID:25753434
  • Islam A, Kageyama H, Takada N, et al. High expression of Survivin, mapped to 17q25, is significantly associated with poor prognostic factors and promotes cell survival in human neuroblastoma. Oncogene. 2000;19:617–623. doi:10.1038/sj.onc.1203358. PMID:10698506
  • Caron H, van Sluis P, de Kraker J, et al. Allelic loss of chromosome 1p as a predictor of unfavorable outcome in patients with neuroblastoma. N Engl J Med. 1996;334:225–230. doi:10.1056/nejm199601253340404. PMID:8531999
  • Henrich KO, Schwab M, Westermann F. 1p36 tumor suppression–a matter of dosage? Cancer Res. 2012;72:6079–6088. doi:10.1158/0008-5472.can-12-2230. PMID:23172308
  • Diskin SJ, Hou C, Glessner JT, et al. Copy number variation at 1q21.1 associated with neuroblastoma. Nature. 2009;459:987–991. doi:10.1038/nature08035. PMID:2755253
  • Wang K, Li M, Hadley D, et al. PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res. 2007;17:1665–1674. doi:10.1101/gr.6861907. PMID:2045149
  • R Core Team. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2016.
  • Kaplan EL, Meier P. Nonparametric estimation from incomplete observations. In: Kotz S, Johnson N, editors. Breakthroughs in statistics. Springer Series in Satistics. New York (NY): Springer New York; 1992. p. 319–337.
  • Therneau T [Internet]. Rochester (MN): Mayo Clinic; A Package for Survival Analysis in S. version 2.38. c2015 [cited 2017 July 17]. Available from: https://CRAN.R-project.org/package=survival
  • Kassambara A, Kosinski M [Internet]. Marseille (France): Statistical tools for high throughput data analysis. Survminer: Drawing Survival Curves using ‘ggplot2’. 2016. c2016 [cited 2017 July 17]. Available from: http://www.sthda.com/english/rpkgs/survminer/.
  • Goel MK, Khanna P, Kishore J. Understanding survival analysis: Kaplan-Meier estimate. Int J Ayurveda Res. 2010;1:274–278. doi:10.4103/0974-7788.76794. PMID:3059453

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.