Melatonin promotes Cashmere goat (Capra hircus) secondary hair follicle growth: a view from integrated analysis of long non-coding and coding RNAs

References

• Claustrat B, Leston J. Melatonin: physiological effects in humans. Neuro-Chirurgie. 2015;61:77–84. PMID:25908646.
   PubMed Web of Science ®Google Scholar
• Slominski AT, Kleszczynski K, Semak I, et al. Local melatoninergic system as the protector of skin integrity. Int J Mol Sci. 2014;15:17705–17732. PMID:25272227.
   PubMed Web of Science ®Google Scholar
• Slominski RM, Reiter RJ, Schlabritz-Loutsevitch N, et al. Melatonin membrane receptors in peripheral tissues: distribution and functions. Mol Cell Endocrinol. 2012;351:152–166. PMID:22245784.
   PubMed Web of Science ®Google Scholar
• Manchester LC, Coto-Montes A, Boga JA, et al. Melatonin: an ancient molecule that makes oxygen metabolically tolerable. J Pineal Res. 2015;59:403–419. PMID:26272235.
   PubMed Web of Science ®Google Scholar
• Mendivil-Perez M, Soto-Mercado V, Guerra-Librero A, et al. Melatonin enhances neural stem cell differentiation and engraftment by increasing mitochondrial function. J Pineal Res. 2017;63:e12415. PMID:28423196.
   PubMed Web of Science ®Google Scholar
• Majidinia M, Sadeghpour A, Mehrzadi S, et al. Melatonin: A pleiotropic molecule that modulates DNA damage response and repair pathways. J Pineal Res. 2017;63:e12416. PMID:28439991.
   PubMed Web of Science ®Google Scholar
• Luchetti F, Canonico B, Betti M, et al. Melatonin signaling and cell protection function. FASEB J. 2010;24:3603–3624. PMID:20534884.
   PubMed Web of Science ®Google Scholar
• Slominski A, Tobin DJ, Shibahara S, et al. Melanin pigmentation in mammalian skin and its hormonal regulation. Physiol Rev. 2004;84:1155–1228. PMID:15383650.
   PubMed Web of Science ®Google Scholar
• Acuna-Castroviejo D, Escames G, Venegas C, et al. Extrapineal melatonin: sources, regulation, and potential functions. Cell Mol Life Sci. 2014;71:2997–3025. PMID:24554058.
   PubMed Web of Science ®Google Scholar
• Stehle JH, Saade A, Rawashdeh O, et al. A survey of molecular details in the human pineal gland in the light of phylogeny, structure, function and chronobiological diseases. J Pineal Res. 2011;51:17–43. PMID:21517957.
   PubMed Web of Science ®Google Scholar
• Ibraheem M, Galbraith H, Scaife J, et al. Growth of secondary hair follicles of the Cashmere goat in vitro and their response to prolactin and melatonin. J Anat. 1994;185(Pt 1): 135–142. PMID:7559108.
   PubMedGoogle Scholar
• Esrefoglu M, Seyhan M, Gul M, et al. Potent therapeutic effect of melatonin on aging skin in pinealectomized rats. J Pineal Res. 2005;39:231–237. PMID:16150102.
   PubMed Web of Science ®Google Scholar
• Fischer TW, Slominski A, Tobin DJ, et al. Melatonin and the hair follicle. J Pineal Res. 2008;44:1–15. PMID:18078443.
   PubMed Web of Science ®Google Scholar
• Liu H, Liu C, Yang G, et al. DNA polymorphism of insulin-like growth factor-binding protein-3 gene and its association with cashmere traits in cashmere goats. Asian-Australas J Anim Sci. 2012;25:1515–1520. PMID:25049511.
   PubMed Web of Science ®Google Scholar
• Ji XY, Wang JX, Liu B, et al. Comparative transcriptome analysis reveals that a ubiquitin-mediated proteolysis pathway is important for primary and secondary hair follicle development in cashmere goats. PloS One. 2016;11:e0156124. PMID:27695037.
   PubMed Web of Science ®Google Scholar
• Greco V, Chen T, Rendl M, et al. A two-step mechanism for stem cell activation during hair regeneration. Cell Stem Cell. 2009;4:155–169. PMID:19200804.
   PubMed Web of Science ®Google Scholar
• Ge W, Cheng SF, Dyce PW, et al. Skin-derived stem cells as a source of primordial germ cell- and oocyte-like cells. Cell Death Dis. 2016;7:e2471. PMID:27831564.
   PubMed Web of Science ®Google Scholar
• Geng R, Yuan C, Chen Y. Exploring differentially expressed genes by RNA-Seq in cashmere goat (Capra hircus) skin during hair follicle development and cycling. PloS One. 2013;8:e62704. PMID:23638136.
   PubMed Web of Science ®Google Scholar
• Fu S, Zhao H, Zheng Z, et al. Melatonin regulating the expression of miRNAs involved in hair follicle cycle of cashmere goats skin. Yi Chuan = Hereditas. 2014;36:1235–1242. PMID:25487268.
   PubMedGoogle Scholar
• Mattick JS. RNA regulation: a new genetics? Nat Reviews Genet. 2004;5:316–323. PMID:15131654.
   PubMed Web of Science ®Google Scholar
• Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell. 2011;43:904–914. PMID:21925379.
   PubMed Web of Science ®Google Scholar
• Xia T, Chen S, Jiang Z, et al. Long noncoding RNA FER1L4 suppresses cancer cell growth by acting as a competing endogenous RNA and regulating PTEN expression. Sci Rep. 2015;5:13445. PMID:26306906.
   PubMed Web of Science ®Google Scholar
• Alvarez-Dominguez JR, Bai Z, Xu D, et al. De novo reconstruction of adipose tissue transcriptomes reveals long non-coding RNA regulators of brown adipocyte development. Cell Metab. 2015;21:764–776. PMID:25921091.
   PubMed Web of Science ®Google Scholar
• Huang X, Yuan T, Tschannen M, et al. Characterization of human plasma-derived exosomal RNAs by deep sequencing. BMC Genomics. 2013;14:319. PMID:23663360.
   PubMed Web of Science ®Google Scholar
• Arita T, Ichikawa D, Konishi H, et al. Circulating long non-coding RNAs in plasma of patients with gastric cancer. Anticancer Res. 2013;33:3185–3193, PMID:23898077
   PubMed Web of Science ®Google Scholar
• Liang L, Ai L, Qian J, et al. Long noncoding RNA expression profiles in gut tissues constitute molecular signatures that reflect the types of microbes. Sci Rep. 2015;5:11763. PMID:26123364.
   PubMed Web of Science ®Google Scholar
• Spurlock CF 3rd, Tossberg JT, Guo Y, et al. Expression and functions of long noncoding RNAs during human T helper cell differentiation. Nat Commun. 2015;6:6932. PMID:25903499.
   PubMed Web of Science ®Google Scholar
• Ren H, Wang G, Chen L, et al. Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus). BMC Genomics. 2016;17:67. PMID:26785828.
   PubMed Web of Science ®Google Scholar
• Chacon-Martinez CA, Klose M, Niemann C, et al. Hair follicle stem cell cultures reveal self-organizing plasticity of stem cells and their progeny. EMBO J. 2017;36:151–164. PMID:27940653.
   PubMed Web of Science ®Google Scholar
• Zhang S, Hu H, Zhang H, et al. Hair follicle stem cells derived from single rat vibrissa via organ culture reconstitute hair follicles in vivo. Cell Transplant. 2012;21:1075–1085. PMID:22546759.
   PubMed Web of Science ®Google Scholar
• Lincoln GA, Ebling FJ. Effect of constant-release implants of melatonin on seasonal cycles in reproduction, prolactin secretion and moulting in rams. J Reprod Fertil. 1985;73: 241–253. PMID:3918164.
   PubMedGoogle Scholar
• Zhang S, Qin C, Cao G, et al. Systematic analysis of long noncoding RNAs in the senescence-accelerated mouse prone 8 brain using RNA sequencing. Mol Ther Nucleic Acid. 2016;5:e343. PMID:27483026.
   PubMedGoogle Scholar
• Liu P, Wang Y, Du X, et al. Transcriptome analysis of thermal parthenogenesis of the domesticated silkworm. PloS One. 2015;10:e0135215. PMID:26274803.
   PubMed Web of Science ®Google Scholar
• Sato T, Katagiri K, Kubota Y, et al. In vitro sperm production from mouse spermatogonial stem cell lines using an organ culture method. Nat Protoc. 2013;8:2098–2104. PMID:24091557.
   PubMed Web of Science ®Google Scholar
• Foldes A, Maxwell CA. Effect of pinealectomy and plane of nutrition on wool growth in Merino sheep. J Pineal Res. 1993;15: 27–34. PMID:8229643.
   PubMed Web of Science ®Google Scholar
• Slominski A, Pisarchik A, Semak I, et al. Serotoninergic and melatoninergic systems are fully expressed in human skin. FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology. 2002;16:896–898. PMID:12039872.
   PubMed Web of Science ®Google Scholar
• Slominski A, Baker J, Rosano TG, et al. Metabolism of serotonin to N-acetylserotonin, melatonin, and 5-methoxytryptamine in hamster skin culture. J Biol Chem. 1996;271: 12281–12286. PMID:8647827.
   PubMed Web of Science ®Google Scholar
• Slominski AT, Semak I, Fischer TW, et al. Metabolism of melatonin in the skin: why is it important? Exp Dermatol. 2017;26:563–568. PMID:27619234.
   PubMed Web of Science ®Google Scholar
• Kim TK, Kleszczynski K, Janjetovic Z, et al. Metabolism of melatonin and biological activity of intermediates of melatoninergic pathway in human skin cells. FASEB J. 2013;27:2742–2755. PMID:23620527.
   PubMed Web of Science ®Google Scholar
• Biernaskie J, Paris M, Morozova O, et al. SKPs derive from hair follicle precursors and exhibit properties of adult dermal stem cells. Cell Stem Cell. 2009;5:610–623. PMID:19951689.
   PubMed Web of Science ®Google Scholar
• Muller-Rover S, Handjiski B, van der Veen C, et al. A comprehensive guide for the accurate classification of murine hair follicles in distinct hair cycle stages. J Invest Dermatol. 2001;117:3–15. PMID:11442744.
   PubMed Web of Science ®Google Scholar
• Zhu B, Xu T, Yuan J, et al. Transcriptome sequencing reveals differences between primary and secondary hair follicle-derived dermal papilla cells of the Cashmere goat (Capra hircus). PloS One. 2013;8:e76282. PMID:24069460.
   PubMed Web of Science ®Google Scholar
• Schwarzbauer J. Basement membranes: putting up the barriers. Current Biology: CB. 1999;9: R242–R244. PMID:10209113.
   PubMed Web of Science ®Google Scholar
• Timpl R. Macromolecular organization of basement membranes. Curr Opin Cell Biol. 1996;8: 618–624. PMID:8939648.
   PubMed Web of Science ®Google Scholar
• Poschl E, Schlotzer-Schrehardt U, Brachvogel B, et al. Collagen IV is essential for basement membrane stability but dispensable for initiation of its assembly during early development. Development. 2004;131:1619–1628. PMID:14998921.
   PubMed Web of Science ®Google Scholar
• Kyriakides TR, Leach KJ, Hoffman AS, et al. Mice that lack the angiogenesis inhibitor, thrombospondin 2, mount an altered foreign body reaction characterized by increased vascularity. Proc Natl Acad Sci U S A. 1999;96: 4449–4454. PMID:10200282.
   PubMed Web of Science ®Google Scholar
• Eder J, Laccone F, Rohrbach M, et al. A new COL3A1 mutation in Ehlers-Danlos syndrome type IV. Exp Dermatol. 2013;22:231–234. PMID:23489429.
   PubMed Web of Science ®Google Scholar
• Reed CC, Iozzo RV. The role of decorin in collagen fibrillogenesis and skin homeostasis. Glycoconj J. 2002;19:249–255. PMID:12975602.
   PubMed Web of Science ®Google Scholar
• Yeh JT, Yeh LK, Jung SM, et al. Impaired skin wound healing in lumican-null mice. Br J Dermatol. 2010;163:1174–1180. PMID:20738297.
   PubMed Web of Science ®Google Scholar
• Zhang YC, Liao JY, Li ZY, et al. Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice. Genome Biol. 2014;15:512. PMID:25517485.
   PubMed Web of Science ®Google Scholar
• Marquardt S, Raitskin O, Wu Z, et al. Functional consequences of splicing of the antisense transcript COOLAIR on FLC transcription. Mol Cell. 2014;54:156–165. PMID:24725596.
   PubMed Web of Science ®Google Scholar
• Yano K, Brown LF, Detmar M. Control of hair growth and follicle size by VEGF-mediated angiogenesis. J Clin Invest. 2001;107:409–417. PMID:11181640.
   PubMed Web of Science ®Google Scholar
• Mecklenburg L, Tobin DJ, Muller-Rover S, et al. Active hair growth (anagen) is associated with angiogenesis. J Invest Dermatol. 2000;114:909–916. PMID:10771470.
   PubMed Web of Science ®Google Scholar
• Ge W, Zhao Y, Lai FN, et al. Cutaneous applied nano-ZnO reduce the ability of hair follicle stem cells to differentiate. Nanotoxicology. 2017;11:465–474. PMID:28326861.
   PubMed Web of Science ®Google Scholar
• Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9:357–359. PMID:22388286.
   PubMed Web of Science ®Google Scholar
• Langmead B, Trapnell C, Pop M, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10:R25. PMID:19261174.
   PubMed Web of Science ®Google Scholar
• Trapnell C, Roberts A, Goff L, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012;7:562–578. PMID:22383036.
   PubMed Web of Science ®Google Scholar
• Trapnell C, Williams BA, Pertea G, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28:511–515. PMID:20436464.
   PubMed Web of Science ®Google Scholar
• Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4:44–57. PMID:19131956.
   PubMed Web of Science ®Google Scholar
• Huang da W, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009;37:1–13. PMID:19033363.
   PubMed Web of Science ®Google Scholar
• Wang S, Ge W, Luo Z, et al. Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus). BMC Genomics. 2017;18:767. PMID:29020916.
   PubMed Web of Science ®Google Scholar