REFERENCES
- Carbone , G. , Gomez-Bravo , F. , Selvi , O. ( 2012 ). An experimental validation of collision-free trajectories for parallel manipulators . Mechanics Based Design of Structures and Machines 40 ( 4 ): 414 – 433 .
- Cornell , N. W. D. , Cieplak , P. , Bayly , C. I. , Gould , I. R. , Merz , K. M. , Ferguson , D. M. , Spellmeyer , D. C. , Fox , T. , Caldwell , J. W. , Kollman , P. A. ( 1995 ). A second generation force field for the simulation of proteins, nucleic acids, and organic molecules . Journal of the American Chemical Society 117 ( 19 ): 5179 – 5197 .
- Diez , M. , Petuya , V. , Macho , E. , Hernández , A. ( 2010 ). Protein kinematic motion simulation including potential energy feedback . New Trends in Mechanism Science: Analysis and Design 82 – 90 .
- Diez , M. , Petuya , V. , Martínez-Cruz , L. A. , Hernández , A. ( 2011 ). A biokinematic approach for the computational simulation of proteins molecular mechanism . Mechanism and Machine Theory 46 ( 12 ): 1854 – 1868 .
- Diez , M. , Petuya , V. , Martínez-Cruz , L. A. , Hernández , A. (2013). Biokinematic protein simulation by an adaptive angle approach. Mechanism and Machine Theory 69:105–114.
- Jeong , J. I. , Lattman , E. E. , Chirikjian , G. S. ( 2006 ). A method for finding candidate conformations for molecular replacement using relative rotation between domains of a known structure . Acta Crystallographica Section D Biological Crystallography 62 ( 4 ): 398 – 409 .
- Lucas , M. , Encinar , J. A. , Arribas , E. A. , Oyenarte , I. , García , I. G. , Kortazar , D. , Fernández , J. A. , Mato , J. M. , Martínez-Chantar , M. L. , Martínez-Cruz , L. A. ( 2010 ). Binding of S-methyl-5’-thioadenosine and S-adenosyl-L-methionine to protein MJ0100 triggers an open-to-closed conformational change in its CBS motif pair . Journal of Molecular Biology 396 ( 3 ): 800 – 820 .
- Madden , C. , Bohnenkamp , P. , Kazerounian , K. , Ilies , H. T. ( 2009 ). Residue level three-dimensional workspace maps for conformational trajectory planning of proteins . The International Journal of Robotics Research 28 ( 4 ): 450 – 463 .
- Pratiher , B. , Dwivedy , S. K. ( 2011 ). Nonlinear vibrations and frequency response analysis of a cantilever beam under periodically varying magnetic field . Mechanics Based Design of Structures and Machines 39 ( 3 ): 378 – 391 .
- Thomas , S. , Tang , X. , Tapia , L. , Amato , N. M. ( 2007 ). Simulating protein motions with rigidity analysis . Journal of Computational Biology 14 ( 6 ): 839 – 855 .
- #Communicated by G. K. Ananthasuresh.
- Color versions of one or more of the figures in the article can be found online at www.tandfonline.com/lmbd.