Identification of Differentially Expressed Proteins in Cassava Infected with Colletotrichum gloeosporioides f. sp. manihotis

REFERENCES

• Ángeles Castillejo, M., N. Amiour, E. Dumas–Gaudot, D. Rubiales, and J. V. Jorrı́n. 2004. A proteomic approach to studying plant response to crenate broomrape (Orobanche crenata) in pea (Pisum sativum). Phytochem. 65(12):1817–1828.
   PubMed Web of Science ®Google Scholar
• Asada, K. 2006. Production and scavenging of reactive oxygen species in chloroplasts and their functions. Plant Physiol. 141(2): 391–396.
   PubMed Web of Science ®Google Scholar
• Baba, A.I ., F. C. S. Nogueira, C. B. Pinheiro, J. N. Brasil, E. S. Jereissati, T. L. Jucá, A. A. Soares, M. F. Santos, G. B. Domont, and F. A. P. Campos. 2008. Proteome analysis of secondary somatic embryogenesis in cassava (Manihot esculenta). Plant Sci. (Amsterdam, Neth.). 175(5):717–723.
   Google Scholar
• Butt, Y. K.–C., and S. C.–L. Lo. 2007. Proteomic studies on plant–pathogen interaction in compatible and incompatible systems. Curr. Proteomics 4(3):141–156.
   Google Scholar
• Cabral, B. G., and J. C. B. L. Carvalho. 2001. Analysis of proteins associated with storage root formation in cassava using two–dimensional gel electrophoresis. Rev. Bras. Fisiol. Veg. 13(1):41–48.
   Google Scholar
• Cánovas, F. M., E. Dumas–Gaudot, G. Recorbet, J. Jorrin, H. P. Mock, and M. Rossignol. 2004. Plant proteome analysis. Proteomics 4(2):285–298.
   PubMed Web of Science ®Google Scholar
• Cao, Y., Q. Zhang, Y. Chen, H. Zhao, Y. Lang, C. Yu, and J. Yang. 2013. Identification of differential expression genes in leaves of rice (Oryza sativa L.) in response to heat stress by cDNA–AFLP analysis. BioMed Res. Int. 2013: 11.
   Google Scholar
• Capaldi, R. A., and R. Aggeler. 2002. Mechanism of the F1F0–type ATP synthase, a biological rotary motor. Trends Biochem. Sci. 27(3):154–160.
   PubMed Web of Science ®Google Scholar
• Caspar, T., S. C. Huber, and C. Somerville. 1985. Alterations in growth, photosynthesis, and respiration in a starchless mutant of Arabidopsis thaliana (L.) deficient in chloroplast phosphoglucomutase activity. Plant Physiol. 79(1):11–17.
   PubMed Web of Science ®Google Scholar
• Collinson, I. R., M. J. Runswick, S. K. Buchanan, I. M. Fearnley, J. M. Skehel, M. J. van Raaij, D. E. Griffiths, and J. E. Walker. 1994. Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1–ATPase. Biochemistry 33(25):7971–7978.
   PubMed Web of Science ®Google Scholar
• Cooper, C. E., and G. C. Brown. 2008. The inhibition of mitochondrial cytochrome oxidase by the gases carbon monoxide, nitric oxide, hydrogen cyanide and hydrogen sulfide: chemical mechanism and physiological significance. J. Bioenerg. Biomembr. 40(5):533–539.
   PubMed Web of Science ®Google Scholar
• Doke, N., Y. Miura, L. M. Sanchez, H. J. Park, T. Noritake, H. Yoshioka, and K. Kawakita. 1996. The oxidative burst protects plants against pathogen attack: mechanism and role as an emergency signal for plant bio–defence – a review. Gene 179(1):45–51.
   PubMed Web of Science ®Google Scholar
• Enami, I., S. Yoshihara, A. Tohri, A. Okumura, H. Ohta, and J.–R. Shen. 2000. Cross–reconstitution of various extrinsic proteins and photosystem II complexes from cyanobacteria, red algae and higher plants. Plant Cell Physiol. 41(12):1354–1364.
   PubMed Web of Science ®Google Scholar
• Fang, X., W. Chen, Y. Xin, H. Zhang, C. Yan, H. Yu, H. Liu, W. Xiao, S. Wang, G. Zheng, H. Liu, L. Jin, H. Ma, and S. Ruan. 2012. Proteomic analysis of strawberry leaves infected with Colletotrichum fragariae. J. Proteomics 75(13):4074–4090.
   PubMed Web of Science ®Google Scholar
• Fokunang C. N., Dixon A. G. O., Ikotun T, Tembe E. A., Akem C. N., and Asiedu R. 2001. Anthracnose: an economic disease of cassava in Africa. Pakistan J. Biol. Sci. 4(7):920–925.
   Google Scholar
• Fokunang, C. N., A. G. Dixon, T. Ikotun, R. Asiedu, E. A. Tembe, and C. N. Akem. 2002. In vitro, greenhouse and field assessments of cassava lines for resistance to anthracnose disease caused by Colletotrichum gloeosporioides f.sp. manihotis. Mycopathologia 154(4):191–198.
   PubMed Web of Science ®Google Scholar
• Gechev, T.S., F. Van Breusegem, J.M. Stone, I. Denev, and C. Laloi. 2006. Reactive oxygen species as signals that modulate plant stress responses and programmed cell death. BioEssays 28(11):1091–1101.
   PubMed Web of Science ®Google Scholar
• Geddes, J., F. Eudes, A. Laroche, and L. B. Selinger. 2008. Differential expression of proteins in response to the interaction between the pathogen Fusarium graminearum and its host, Hordeum vulgare. Proteomics 8(3):545–554.
   PubMed Web of Science ®Google Scholar
• Hahn, S. K., J. C. G. Isoba, and T. Ikotun. 1989. Resistance breeding in root and tuber crops at the international institute of tropical agriculture (IITA), Ibadan, Nigeria. Crop Prot. 8(3):147–168.
   Web of Science ®Google Scholar
• Hahn, S. K., E. R. Terry, K. Leuschner, I. O. Akobundu, C. Okali, and R. Lal. 1979. Cassava improvement in Africa. Field Crops Res. 2(0):193–226.
   Web of Science ®Google Scholar
• Hurkman, W. J., and C. K. Tanaka. 1986. Solubilization of plant membrane proteins for analysis by two–dimensional gel electrophoresis. Plant Physiol. 81(3):802–806.
   PubMed Web of Science ®Google Scholar
• Kehrer, J. P. 2000. The haber–weiss reaction and mechanisms of toxicity. Toxicology 149(1): 43–50.
   PubMed Web of Science ®Google Scholar
• Kramer, D. M., J. A. Cruz, and A. Kanazawa. 2003. Balancing the central roles of the thylakoid proton gradient. Trends Plant Sci. 8(1):27–32.
   PubMed Web of Science ®Google Scholar
• Kroth, P. G., A. Chiovitti, A. Gruber, V. Martin–Jezequel, T. Mock, M. S. Parker, M. S. Stanley, A. Kaplan, L. Caron, T. Weber, U. Maheswari, E.V. Armbrust and C. Bowler. 2008. A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis. PLoS One 3(1):e1426.
   PubMed Web of Science ®Google Scholar
• Kunkeaw, S., J. Worapong, D. Smith, and K. Triwitayakorn. 2010. An in vitro detached leaf assay for pre–screening resistance to anthracnose disease in cassava (Manihot esculenta crantz). Australas. Plant Pathol. 39(6):547–550.
   Web of Science ®Google Scholar
• Lebot, V. 2009. Tropical root and tuber crops: cassava, sweet potato, yams and aroids. In Crop production science in horticulture, 17. Wallingford, UK: CABI Publishing.
   Google Scholar
• Lee, J., T. M. Bricker, M. Lefevre, S. R. M. Pinson, and J. H. Oard. 2006. Proteomic and genetic approaches to identifying defence–related proteins in rice challenged with the fungal pathogen Rhizoctonia solani. Mol. Plant Pathol. 7(5):405–416.
   PubMed Web of Science ®Google Scholar
• Leyva, J. A., M. A. Bianchet and L. M. Amzel. 2003. Understanding atp synthesis: Structure and mechanism of the F1–ATPase (review). Mol. Membr. Biol. 20(1):27–33.
   PubMed Web of Science ®Google Scholar
• Li, K., W. Zhu, K. Zeng, Z. Zhang, J. Ye, W. Ou, S. Rehman, B. Heuer, and S. Chen. 2010. Proteome characterization of cassava (Manihot esculenta crantz) somatic embryos, plantlets and tuberous roots. Proteome Sci. 8(1):1–12.
   PubMed Web of Science ®Google Scholar
• Livak, K. J., and T. D. Schmittgen. 2001. Analysis of relative gene expression data using real–time quantitative pcr and the 2−ΔΔct method. Methods 25(4):402–408.
   PubMed Web of Science ®Google Scholar
• Mahungu, N. M., A. G. O. Dixon, and J. M. Kumbira. 1994. Breeding cassava for multiple pest resistance in Africa. Afr. Crop Sci. J. 2(4):539–552.
   Google Scholar
• Makambila, C. 1994. The fungal disease of cassava in the republic of Congo, central Africa. Afr. Crop Sci. J. 2(4):511–517.
   Google Scholar
• Michelsen, C. F., and P. Stougaard. 2012. Hydrogen cyanide synthesis and antifungal activity of the biocontrol strain Pseudomonas fluorescens In5 from greenland is highly dependent on growth medium. Can. J. Microbiol. 58(4):381–390.
   PubMed Web of Science ®Google Scholar
• Mitprasat, M., S. Roytrakul, S. Jiemsup, O. Boonseng, and K. Yokthongwattana. 2011. Leaf proteomic analysis in cassava (Manihot esculenta Crantz) during plant development, from planting of stem cutting to storage root formation. Planta 233(6):1209–1221.
   PubMed Web of Science ®Google Scholar
• Morell, S., H. Follmann, M. De Tullio and I. Häberlein. 1997. Dehydroascorbate and dehydroascorbate reductase are phantom indicators of oxidative stress in plants. FEBS Lett. 414(3):567–570.
   PubMed Web of Science ®Google Scholar
• Muimba, K. A., M. O. Adeniyi, and E. R. Terry. 1983. Susceptibility of cassava to Colletotrichum manihotis. In Tropical root crops: production and uses in Africa, ed. E. R. Terry, E. V. Doku, O. B. Arene and N. M. Maungu, 82–85. Proceedings of 2nd Triennial Symposium of the International Society for Tropical Root Crops Africa Branch, August 1983, Douala. Cameroon.
   Google Scholar
• Obilo, O. P., B. Ikotun, G. O. Ihejirika, I. I. Ibeawuchi, and T. T. Oben. 2010. The effect of the incidence of cassava anthracnose disease (CAD) on the performance and yield of cassava cultivars. Crop Prot. 29(5):482–486.
   Web of Science ®Google Scholar
• Plücken, H., B. Müller, D. Grohmann, P. Westhoff, and L. A. Eichacker. 2002. The HCF136 protein is essential for assembly of the photosystemII reaction center in Arabidopsis thaliana. FEBS Lett. 532(1):85–90.
   PubMed Web of Science ®Google Scholar
• Poramacom, N. 2013. Cassava production, prices and related policy in Thailand. Am. Int. J. Contemp. Res. 3(5):43–51.
   Google Scholar
• Quirino, B. F., E. S. Candido, P. F. Campos, O. L. Franco and R. H. Krüger. 2010. Proteomic approaches to study plant–pathogen interactions. Phytochem. 71(4):351–362.
   PubMed Web of Science ®Google Scholar
• Raji, A., J. Anderson, O. Kolade, C. Ugwu, A. Dixon and I. Ingelbrecht. 2009. Gene–based microsatellites for cassava (Manihot esculenta crantz): Prevalence, polymorphisms, and cross–taxa utility. BMC Plant Biol. 9(1):118.
   PubMedGoogle Scholar
• Selmar, D., R. Lieberei, B. Biehl, and E. E. Conn, 1989. Α–hydroxynitrile lyase in Hevea brasiliensis and its significance for rapid cyanogenesis. Physiol. Plant 75(1):97–101.
   Web of Science ®Google Scholar
• Sheffield, J., N. Taylor, C. Fauquet, and S. Chen. 2006. The cassava (Manihot esculenta Crantz) root proteome: Protein identification and differential expression. Proteomics 6(5):1588–1598.
   PubMed Web of Science ®Google Scholar
• Shetty, J. K., G. Chotani, D. Gang, and D. Bates. 2007. Cassava as an alternative feedstock in the production of transportation fuel. Int Sugar J. 109:663–677.
   Web of Science ®Google Scholar
• Sraphet, S., A. Boonchanawiwat, T. Thanyasiriwat, O. Boonseng, S. Tabata, S. Sasamoto, K. Shirasawa, S. Isobe, D. Lightfoot, S. Tangphatsornruang and K. Triwitayakorn. 2011. SSR and EST–SSR–based genetic linkage map of cassava (Manihot esculenta Crantz). Theor. Appl. Genet. 122(6):1161–1170.
   PubMed Web of Science ®Google Scholar
• Subramanian, B., V. K. Bansal and N. N. V. Kav. 2004. Proteome–level investigation of Brassica carinata–derived resistance to Leptosphaeria maculans. J. Agric. Food Chem. 53(2):313–324.
   Web of Science ®Google Scholar
• Sun, C., L. Wang, D. Hu, A.R.M. Riquicho, T. Liu, X. Hou and Y. Li. 2014. Proteomic analysis of non–heading chinese cabbage infected with Hyaloperonospora parasitica. J. Proteomics 98(0):15–30.
   PubMedGoogle Scholar
• Thanyasiriwat, T., S. Sraphet, S. Whankaew, O. Boonseng, J. Bao, D.A. Lightfoot, S. Tangphatsornruang, and K. Triwitayakorn. 2014. Quantitative trait loci and candidate genes associated with starch pasting viscosity characteristics in cassava (Manihot esculenta crantz). Plant Biol. 16(1):197–207.
   PubMed Web of Science ®Google Scholar
• Théberge, R.L., 1985. Common african pests and diseases of cassava, yam, sweet potato and cocoyam. Ibadan, Nigeria: IITA.
   Google Scholar
• Torres, M. A., J. D. Jones, and J. L. Dangl. 2006. Reactive oxygen species signaling in response to pathogens. Plant Physiol. 141(2):373–378.
   PubMed Web of Science ®Google Scholar
• Wei, M., W. Zhu, G. Xie, T. A. Lestander, and S. Xiong. 2015. Cassava stem wastes as potential feedstock for fuel ethanol production: A basic parameter study. Renew. Energ. 83(0):970–978.
   Google Scholar
• Whankaew, S., S. Poopear, S. Kanjanawattanawong, S. Tangphatsornruang, O. Boonseng, D. Lightfoot, and K. Triwitayakorn. 2011. A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population. BMC Genomics 12(1):1–12.
   Google Scholar
• White, W. L. B., D. I. Arias–Garzon, J. M. McMahon, and R.T. Sayre. 1998. Cyanogenesis in cassava. The role of hydroxynitrile lyase in root cyanide production. Plant Physiol. 116(4):1219–1225.
   PubMed Web of Science ®Google Scholar
• White, W. L. B., J. M. McMahon, and R. T. Sayre. 1994. Regulation of cyanogenesis in cassava. Acta Hortic. 375:69–77.
   Google Scholar
• Wienkoop, S., M. Glinski, N. Tanaka, V. Tolstikov, O. Fiehn, and W. Weckwerth. 2004. Linking protein fractionation with multidimensional monolithic reversed–phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. Rapid Commun. Mass Spectrom. 18(6):643–650.
   PubMed Web of Science ®Google Scholar
• Wittmann–Liebold, B., H.–R. Graack and T. Pohl. 2006. Two–dimensional gel electrophoresis as tool for proteomics studies in combination with protein identification by mass spectrometry. Proteomics 6(17):4688–4703.
   PubMed Web of Science ®Google Scholar