Molecular characterization of soybean (glycine max) accessions from the international collection of the plant gene resources of Canada: germplasm identification

References

• Adinolfi, B., A. Chicca, E. Martinotti, M. C. Breschi, and P. Nieri. 2007. “Sequence Characterized Amplified Region (SCAR) Analysis on DNA from Three Medicinal Echinacea Species.” Fitoterapia 78 (1): 43–45. doi:10.1016/j.fitote.2006.09.012.
   PubMed Web of Science ®Google Scholar
• Akkaya, M. S., A. A. Bhagwat, and P. B. Creg. 1992. “Length Polymorphism of Simple Sequence Repeat DNA in Soybean.” Genetics 47: 1131–1139.
   Google Scholar
• Apuya, N., B. L. Frazier, P. Keim, E. Jill Roth, and K. G. Lark. 1988. “Restriction Fragment Length Polymorphisms as Genetic Markers in Soybean, Glycine Max (L.) Merrill.” Theoretical and Applied Genetics 75 (6): 889–901. doi:10.1007/BF00258050.
   Web of Science ®Google Scholar
• Baloch, F. S., C. Kurt*, H. Arioğlu, and H. Özkan. 2010. “Assaying of Diversity among Soybean (Glycine Max (L.) Merr.) and Peanut (Arachis Hypogaea L.) Genotypes at DNA Level.” Turkish Journal of Agriculture and Forestry 34: 285–301.
   Web of Science ®Google Scholar
• Bonato, A. L. V., E. S. Calvo, I. O. Geraldi, and C. A. A. Arias. 2006. “Genetic Similarity among Soybean (Glycine Max (L) Merrill) Cultivars Released in Brazil Using AFLP Markers.” Genetics and Molecular Biology 29 (4): 692–704. doi:10.1590/S1415-47572006000400019.
   Web of Science ®Google Scholar
• Boyd, M., M. A. Panoyan, P. Michael, and K. K. Nkongolo. 2019. “Development and Characterization of Species-diagnostic ISSR and SCAR DNA Markers for Differentiating Red Maple (Acer Rubrum) and Silver Maple (A. Saccharinum).” Genome 62 (8): 527–535. doi:10.1139/gen-2019-0037.
   PubMed Web of Science ®Google Scholar
• Brown-Guedira, G. L., J. A. Thompson, R. L. Nelson, and M. L. Warburton. 2000. “Evaluation of Genetic Diversity of Soybean Introductions and North American Ancestors Using RAPD and SSR Markers.” Crop Sciences 40 (3): 815–823. doi:10.2135/cropsci2000.403815x.
   Web of Science ®Google Scholar
• Burton, J. W., and L. Miranda. 2013. “Soybean Improvement: Achievements and Challenges.” Ratarstvo I Povrtarstvo - Journal of Field and Vegetable Crop Research 50 (2): 44–51. doi:10.5937/ratpov50-4158.
   Google Scholar
• Carter, T. E., R. L. Nelson, C. H. Sneller, and Z. Cui. 2004. “Genetic Diversity in Soybean.” In Soybeans: Improvement, Production and Uses, edited by J. E. Spect and H. R. Boerna, 303–416. Madison, WI: ASA/CSSA/SSSA.
   Google Scholar
• Chang, R. Z., L. J. Qiu, J. Y. Sun, Y. Chen, X. H. Li, and Z. Y. Xu. 1999. “Collection and Conservation of Soybean Germplasm in China.” In Proc. World Soybean Research Conference VI. Chicago, IL, edited by Kauffman, H. E, 172–176. Urbana, IL: National Soybean Research Lab. 4–7 August 1999.
   Google Scholar
• Chavan, P., Warude, D., Joshi, K., and Patwardhan, B. 2008. “Development of SCAR (sequence‐characterized amplified region) markers as a complementary tool for identification of ginger (Zingiber officinale Roscoe) from crude drugs and multicomponent formulations.” Biotechnology and Applied Biochemistry 50: 61–69. doi:10.1042/BA20070128
   Google Scholar
• Chen, Y. W., and R. L. Nelson. 2005. “Relationship between Origin and Genetic Diversity in Chinese Soybean Germplasm.” Crop Sciences 45 (4): 1645–1652. doi:10.2135/cropsci2004.0071.
   Web of Science ®Google Scholar
• Chowdhury, A. K., P. Srinives, P. Tongpamnak, P. Saksoong, and P. Chatwachirawong. 2002. “Genetic Relationship among Exotic Soybean Introductions in Thailand: Consequence for Varietal Registration.” Science Asia 28 (3): 227–239. doi:10.2306/scienceasia1513-1874.2002.28.227.
   Google Scholar
• de la Hoz, S., M. P., J. A. Davila, Y. Loarce, and E. Ferrer. 1996. “Simple Sequence Repeat Primers Used in Polymerase Chain Reaction Amplifications to Study Genetic Diversity in Barley.” Genome 39 (1): 112–117. doi:10.1139/g96-015.
   PubMed Web of Science ®Google Scholar
• Devaiah, K., S. P. Balusubramani, and P. Venkatasubramanian. 2010. “Development of Randomly Amplified Polymorphic DNA Based SCAR Marker for Identification of Ipomoea Mauritiana Jacq (Convolvulaceae).” eCAM 2011: 1–7.
   Google Scholar
• Doldi, M. L., J. Vollmann, and T. Lelley. 1997. “Genetic Diversity in Soybean as Determined by RAPD and Microsatellite Analysis.” Plant Breeding 116 (4): 331–335. doi:10.1111/j.1439-0523.1997.tb01007.x.
   Web of Science ®Google Scholar
• Dong, D., X. Fu, F. Yuan, P. Chen, S. Zhu, B. Li, Q. Yang et al.. 2014. “Genetic Diversity and Population Structure of Vegetable Soybean (Glycine Max (L.) Merr.) In China as Revealed by SSR Markers.” Genet Resources and Crop Evolution 61 (1): 173–183. DOI:10.1007/s10722-013-0024-y.
   Web of Science ®Google Scholar
• Ford, B. A., P. W. Ball, and K. Ritland. 1991. “Allozyme Diversity and Genetic Relationships among North American Members of the Short-beaked Taxa of Carex Sect. Vesicariae Cyperaceae.” Systematic Botany 16 (1): 116–131. doi:10.2307/2418977.
   Web of Science ®Google Scholar
• Funatsukih, H., M. Ishimoto, H. Tsuji, K. Kawaguchi, M. Hajika, and K. Fujno. 2006. “Simple Sequence Repeat Markers Linked to a Major QTL Controlling Pod Shattering in Soybean.” Plant Breeding 125 (2): 195–197. doi:10.1111/j.1439-0523.2006.01199.x.
   Web of Science ®Google Scholar
• Green, M. R., and J. Sambrook. 2012. Molecular Cloning: A Laboratory Manual, 1881. 12e edition ed. NY. USA: Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
   Google Scholar
• Hiromoto, D. M., and N. A. Vello. 1986. “The Genetic Base of Brazilian Soybean (Glycine Max (L.) Merril) Cultivars.” Brazilian Journal of Genetics 9: 295–306.
   Google Scholar
• Hyten, D. L., Q. J. Song, Y. I. Zhu, I. Y. Choi, R. L. Nelson, J. M. Costa, J. E. Specht, R. C. Shoemaker, and P. B. Cregan. 2008. “Impacts of Genetic Bottlenecks on Soybean Genome Diversity.” Proceedings of the National Academy of Sciences USA 103 (45): 16666–16671. doi:10.1073/pnas.0604379103.
   Web of Science ®Google Scholar
• Kachare, S., S. Tiwari, N. Tripathi, and V. V. Thakur. 2020. “Assessment of Genetic Diversity of Soybean (Glycine Max) Genotypes Using Qualitative Traits and Microsatellite Markers.” Agricultural Research 9 (1): 23–34. DOI:10.1007/s40003-019-00412-y.
   Web of Science ®Google Scholar
• Keim, P., B. W. Diers, T. C. Olson, and R. C. Shoemaker. 1990. “RFLP Mapping in Soybean: Association between Marker Loci and Variation in Quantitative Traits.” Genetics 126 (3): 735–742.
   PubMed Web of Science ®Google Scholar
• Keim, P., R. C. Shoemaker, and R. G. Palmer. 1989. “RFLP Diversity in Soybean.” Theoretical and Applied Genetics 77 (6): 786–792. doi:10.1007/BF00268327.
   PubMed Web of Science ®Google Scholar
• Keim, P., W. Beavis, J. Schupp, and  R. Freestone. 1992. “Evaluation of Soybean RFLP Marker Diversity in Adapted Germ Plasm.” Theoretical and Applied Genetics 85 (2–3): 205–212. DOI:10.1007/BF00222861.
   PubMed Web of Science ®Google Scholar
• Lee, J. A., and P. J. Kaltsikes. 1973. “The Application of Mahalanobis’s Generalized Distances to Measure Genetic Divergence in Durum Wheat.” Euphytica 22 (1): 124–131. doi:10.1007/BF00021564.
   Web of Science ®Google Scholar
• Lee, J. W., Y. C. Kim, I. H. Jo, A. Y. Seo, J. H. Lee, Kim, D. Y. Hyun,  S. W. Cha, K. H. Bang,  and J. H. Cho. . 2011. “Development of an ISSR-Derived SCAR Marker in Korean Ginseng Cultivars (Panax Ginseng C. A. Meyer).” Journal of Ginseng Research 35 (1): 52–59. DOI:10.5142/jgr.2011.35.1.052.
   Web of Science ®Google Scholar
• Lin, J., J. Kuo, J. Ma, J. A.Saunders, H. S. Beard, M. H. MacDonald, W. Kenworthy, G. N. Ude, and B. F. Matthews. 1996. “Identification of Molecular Markers in Soybean Comparing RFLP, RAPD and AFLP DNA Mapping Techniques.” Plant Molecular Biology Reporter 14 (2): 156–169. doi:10.1007/BF02684905.
   Web of Science ®Google Scholar
• Liu, T., H. Lin, and R. Wu. 2008. “Identification of Astragalus Medicines Using SCAR Markers.” J Food Drug Anal 16: 57–62.
   Web of Science ®Google Scholar
• Liu, Z., H. Li, Z. Wen, X. Fan, Y. Li, R. Guan,Y. Guo, S. Wang, D. Wang, and L. Qiu. 2017. “Comparison of Genetic Diversity between Chinese and American Soybean (Glycine Max (L.)) Accessions Revealed by High-Density SNPs.” Frontiers in Plant Sciences 8 :2014. doi:10.3389/fpls.2017.02014.
   PubMed Web of Science ®Google Scholar
• Lu, B.-R. 2004. “Conserving Biodiversity of Soybean Gene Pools in the Biotechnology Era.” Plant Species Biology 19 (2): 115–125. doi:10.1111/j.1442-1984.2004.00108.x.
   Google Scholar
• Lu, H., J. S. Li, J. L. Liu, and R. Bernardo. 2002. “Allozyme Polymorphisms of Maize Populations from Southwestern China.” Theoretical and Applied Genetics 104 (1): 119–126. doi:10.1007/s001220200014.
   PubMed Web of Science ®Google Scholar
• Mehes, M., K. K. Nkongolo, and P. Michael. 2007. “Genetic Variation in Pinus Strobus and P. Monticola Populations from Canada: Development of Genome- Specific Markers.” Plant Systematics and Evolution 267 (1–4): 47–63. doi:10.1007/s00606-007-0534-1.
   Web of Science ®Google Scholar
• Moarefi, N., P. Michael, P. Beckett, and K. K. Nkongolo. 2018. “Identification of Molecular Markers Differentiating Betula Papyrifera and B. Pumila Populations from Northern Ontario (Canada).” American Journal of Environmental Sciences 14 (5): 246–256. doi:10.3844/ajessp.2018.246.256.
   Google Scholar
• Moon, B. C., B. K. Choo, M. S. Cheon, T. Yoon, Y. Ji,  B. B. Kim, A. Y. Lee, and H. K. Kim. 2010. “Rapid Molecular Authentication of Three Medicinal Plant Species, Cynanchum Wilfordii, Cynanchum Auriculatum, and Polygonum Multiflorum (Fallopia Multiflorum) by the Development of RAPD-derived SCAR Markers and multiplex-PCR.” Plant Biotechnology 4 (1): 1–7. DOI:10.1007/s11816-009-0114-7.
   Web of Science ®Google Scholar
• Mudibu, J., K. K. C. Nkongolo, M. Mehes-Smith, and A. Kalonji Mbuyi. 2011. “Genetic Analysis of a Soybean Genetic Pool Using ISSR Marker: Effect of Gamma Radiation on Genetic Variability.” Int J Plant Breed Gene 5 (3): 235–245. doi:10.3923/ijpbg.2011.235.245.
   Google Scholar
• Mudibu, J., R. V. Kizungu, R. V. Kizungu, and K. K. Nkongolo. 2012. “Effect of Gamma Irradiation on Morpho-Agronomic Characteristics of Soybeans (Glycine Max L.).” American Journal of Plant Sciences 3 (3): 331–337. doi:10.4236/ajps.2012.33039.
   Google Scholar
• Nkongolo, K. K., P. Michael, and T. Demers. 2005. “Application of ISSR, RAPD, and Cytological Markers to the Certification of Picea Mariana, P. Glauca, and P. Engelmannii Trees, and Their Putative Hybrids.” Genome 48 (2): 302–311. doi:10.1139/g04-118.
   PubMed Web of Science ®Google Scholar
• Pavlicek, A., S. Hrda, and J. Flegr. 1999. “FreeTree - Freeware Program for Construction of Phylogenetic Trees on the Basis of Distance Data and Bootstrap/jackknife Analysis of the Tree Robustness.” Folia Biologica (Praha) 45: 97–99.
   PubMed Web of Science ®Google Scholar
• Powell, W., M. Morgante, J. J. Doyle, J. W. McNicol, and S. V. Tingey. 1996. “Genepool Variation in Genus Glycine Subgenus Soja Revealed by Polymorphic Nuclear and Chloroplast Microsatellites.” Genetics 144 (2): 793–803.
   PubMed Web of Science ®Google Scholar
• Prasad, M., R. K. Varshney, J. K. Roy, H. S. Balyan, and P. K. Gupta. 2000. “The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat.” Theorerical and Applied Genetics 100: 584–592. doi.org/10.1007/s001220050077
   Google Scholar
• Qiu, L. J., P. Y. Chen, Z. X. Liu, and Y.-H. Li. 2011. “The Worldwide Utilization of the Chinese Soybean Germplasm Collection.” Plant Genetic Resources: Characterisation and Utilisation 9 (1): 109–122. doi:10.1017/S1479262110000493.
   Web of Science ®Google Scholar
• Saitou, N., and M. Nei, M.. 1987. “The Neighbor-joining Method: A New Method for Reconstructing Phylogenetic Trees.” Molecular Biology and Evolution 4 (4): 406–425. doi:10.1093/oxfordjournals.molbev.a040454.
   PubMed Web of Science ®Google Scholar
• Tantasawat, P., J. Trongchuen, T. Prajongjai, S. Jenweerawat, and W. Chaowiset. 2011. “SSR Analysis of Soybean (Glycine Max (L.) Merr.) Genetic Relationship and Variety Identification in Thailand.” Australian Journal of Crop Sciences 5: 283–290.
   Google Scholar
• Theerakulpisut, P., N. Kanawpee, D. Maensiri, S. Bunnag, and P. Chantaranothai. 2008. “Development of Species-specific SCAR Markers for Identification of Three Medicinal Species of Phyllanthus.” Journal of Systematics and Evolution 46: 614–621.
   Web of Science ®Google Scholar
• Ude, G. N., W. J. Kenworthy, J. M. Costa, P. B. Cregan, and J. Alvernaz. 2003. “Genetic Diversity of Soybean Cultivars from China, Japan, North America and North American Ancestral Lines Determined by Amplified Fragments Length Polymorphism.” Crop Sciences 43 (5): 1858–1867. doi:10.2135/cropsci2003.1858.
   Web of Science ®Google Scholar
• Vieira, M. L. C., L. Santini, A. L. Diniz, and C. F. Munhoz. 2016. “Microsatellite Markers: What They Mean and Why They are so Useful.” Genetics and Molecular Research 39 (3): 312–328.
   Google Scholar
• Wang, J., W. Y. Ha, F. N. Ngan, H. P. P. But, and P. C. Shaw. 2001. “Application of Sequence Characterized Amplified Region (SCAR) Analysis to Authenticate Panax Species and Their Adulterants.” Planta Medica 67 (8): 781–783. doi:10.1055/s-2001-18340.
   PubMed Web of Science ®Google Scholar
• Wang, L. X., F. Y. Lin, L. H. Li, W. Li, Z. Yan, W. J. Luan, R. H.  Piao, et al. 2016. “Genetic Diversity Center of Cultivated Soybean (Glycine Max) in China: New Insight and Evidence for the Diversity Center of Chinese Cultivated Soybean.” Journal of Integrative Agriculture 15 (11): 2481–2487. DOI:10.1016/S2095-3119(15)61289-8.
   Web of Science ®Google Scholar
• World agricultural production 2020. www.worldagriculturalproduction.com/crop/soybean.aspx, Accessed, December 2020
   Google Scholar
• Yeh, F. C., and T. J. B. Boyle. 1997. “Population Genetic Analysis of Co-dominant and Dominant Markers and Quantitative Traits.” Belgian Journal of Botany 129: 157–163.
   Google Scholar