Identification and Characterization of Differentially Expressed microRNAs and Target Gene Related to Flax Stem Development

References

• Allen, R. S., J. Li, M. I. Stahle, A. Dubroue, F. Gubler, and A. A. Millar. 2007. Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family. Proceedings of the National Academy of Sciences 104 (41):16371–76. doi:10.1073/pnas.0707653104.
   PubMed Web of Science ®Google Scholar
• Chen, J., Z. Pei, L. Dai, B. Wang, L. Liu, X. An, and D. Peng. 2014. Transcriptome profiling using pyrosequencing shows genes associated with bast fiber development in ramie (Boehmeria nivea L.). BMC Genomics 15 (1):919. doi:10.1186/1471-2164-15-919.
   PubMed Web of Science ®Google Scholar
• Evers, M., M. Huttner, A. Dueck, G. Meister, and J. C. Engelmann. 2015. miRA: Adaptable novel miRNA identification in plants using small RNA sequencing data. BMC Bioinformatics 16 (1):370. doi:10.1186/s12859-015-0798-3.
   PubMedGoogle Scholar
• Gorshkov, O., N. Mokshina, V. Gorshkov, S. Chemikosova, and T. Gorshkova. 2016. Transcriptome portrait of cellulose-enriched flax fibres at advanced stage of specialization. Plant Molecular Biology 93 (4–5):1–19.
   Web of Science ®Google Scholar
• Gorshkov, O., T. Chernova, N. Mokshina, N. Gogoleva, D. Suslov, A. Tkachenko, and T. Gorshkova. 2019. Intrusive growth of phloem fibers in flax stem: Integrated analysis of miRNA and mRNA expression profiles. Plants 8 (2):47. doi:10.3390/plants8020047.
   Google Scholar
• Gorshkova, T., T. Chernova, N. Mokshina, V. Gorshkov, L. Kozlova, and O. Gorshkov. 2018. Transcriptome analysis of intrusively growing flax fibers isolated by laser microdissection. Scientific Reports 8 (1):14570. doi:10.1038/s41598-018-32869-2.
   PubMed Web of Science ®Google Scholar
• Guerriero, G., M. Behr, S. Legay, L. Mangeot-Peter, and J. Hausman. 2017. Transcriptomic profiling of hemp bast fibres at different developmental stages. Scientific Reports 7 (1):4961. doi:10.1038/s41598-017-05200-8.
   PubMed Web of Science ®Google Scholar
• Heller, K., and M. Byczyńska (2004). Ontogenesis of fibre flax (Linum usitatissimum L.). CD Proceedings of the Conference “Bast Fibrous Plants for Healthy Life”, October 24-28, in Banja Luka, Bosnia and Herzegovina, Republic of Srpska.
   Google Scholar
• Hu, H., X. He, L. Tu, L. Zhu, S. Zhu, Z. Ge, and X. Zhang. 2016. GhJAZ2 negatively regulates cotton fiber initiation by interacting with the R2R3-MYB transcription factor GhMYB25-like. The Plant Journal 88 (6):921–35. doi:10.1111/tpj.13273.
   PubMed Web of Science ®Google Scholar
• José, L. R., and N. H. Chua. 2010. ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant Journal 49 (4):592–606.
   Google Scholar
• Li, J., M. Reichel, A. A. Millar, and X. Chen. 2014. Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis. Plos Genetics 10 (3):e1004232. doi:10.1371/journal.pgen.1004232.
   PubMed Web of Science ®Google Scholar
• Li, X. H., M. Wu, G. Y. Liu, W. Pei, and S. Yu. 2017. Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton. BMC Genomics 18 (1):427. doi:10.1186/s12864-017-3812-5.
   PubMed Web of Science ®Google Scholar
• Long, S. H., L. Xiang, X. B. Chen, R. Qiao, X. Deng, C. Qiu, … Y. Wang. 2014. Race clone and RNAi transformation of flax 4CL gene. Acta Botanica Boreali-Occidentalia Sinica 12:2405–11.
   Google Scholar
• Luan, M., M. Xu, Y. Lu, L. Zhang, Y. Fan, and L. Wang. 2015. Expression of zma-miR169 miRNAs and their target ZmNF-YA genes in response to abiotic stress in maize leaves. Gene 555 (2):178–85. doi:10.1016/j.gene.2014.11.001.
   PubMed Web of Science ®Google Scholar
• Melnikova, N. V., A. A. Dmitriev, M. S. Belenikin, A. S. Speranskaya, A. A. Krinitsina, O. A. Rachinskaia, … A. V. Kudryavtseva. 2015. Excess fertilizer responsive miRNAs revealed in Linum usitatissimum L. Biochimie 109:36–41. doi:10.1016/j.biochi.2014.11.017.
   PubMed Web of Science ®Google Scholar
• Melnikova, N. V., A. A. Dmitriev, M. S. Belenikin, N. V. Koroban, A. S. Speranskaya, A. A. Krinitsina, … A. V. Kudryavtseva. 2016. Identification, expression analysis, and target prediction of flax genotroph microRNAs under normal and nutrient stress conditions. Frontiers in Plant Science 7:399. doi:10.3389/fpls.2016.00399.
   PubMed Web of Science ®Google Scholar
• Patade, V.Y., Suprasanna, P., 2010. Short-term salt and PEG stresses regulate expression of microRNA, miR159 in sugarcane leaves. Journal of Crop Science & Biotechnology 13(3), 177–182
   Google Scholar
• Rao, S., S. Balyan, S. Jha, and S. Mathur. 2020. Novel insights into expansion and functional diversification of MIR169 family in tomato. Planta 251 (2):55. doi:10.1007/s00425-020-03346-w.
   PubMed Web of Science ®Google Scholar
• Silva, E. M., G. F. Silva, D. B. Bidoia, M. S. Azevedo, F. A. Jesus, L. E. Pino, … F. T. Nogueira. 2017. MicroRNA159-targeted SIGAMYB transcription factors are required for fruit set in tomato. The Plant Journal 92:95–109. doi:10.1111/tpj.13637.
   PubMed Web of Science ®Google Scholar
• Wang, J., X. B. Chen, Y. Gao, Y. Zhang, S. Long, X. Deng, and Y. Wang. 2009. Expression of Critical Lignin Metabolism Genes in Flax (Linum usitatissimum). <![CDATA[ACTA AGRONOMICA SINICA]]> 35 (8):1468–73. doi:10.3724/SP.J.1006.2009.01468.
   Google Scholar
• Wang, M., R. Sun, C. Li, Q. Wang, and B. Zhang. 2017. MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development. Scientific Reports 7 (1):44454. doi:10.1038/srep44454.
   PubMedGoogle Scholar
• Wang, Y., F. Sun, H. Cao, H. Peng, and Y. Yao. 2012. TamiR159 directed wheat TaGAMYB cleavage and its involvement in anther development and heat response. Plos One 7 (11):e48445. doi:10.1371/journal.pone.0048445.
   PubMed Web of Science ®Google Scholar
• Xue, T., Z. Liu, X. Dai, and F. Xiang. 2017. Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101. Plant Science 262:182. doi:10.1016/j.plantsci.2017.06.008.
   PubMed Web of Science ®Google Scholar
• Yu, Y., G. Wu, H. Yuan, L. Cheng, D. Zhao, W. Huang, … F. Guan. 2016. Identification and characterization of miRNAs and targets in flax (Linum usitatissimum) under saline, alkaline, and saline-alkaline stresses. BMC Plant Biology 16 (1):1–13. doi:10.1186/s12870-016-0808-2.
   PubMedGoogle Scholar
• Yu, Y., H. M. Yuan, D. S. Zhao, Y. Yao, F. Zhou, L. Cheng, … G. Wu. 2020. Transcriptome analysis of two flax varieties at different developmental stages reveals significant differential expression of genes related to stem fiber development. Journal of Natural Fibers. doi:10.1080/15440478.2020.1776662.
   Web of Science ®Google Scholar
• Yurkevich, O. Y., I. V. Kirov, N. L. Bolsheva, O. A. Rachinskaya, Z. E. Grushetskaya, S. A. Zoschuk, … O. V. Muravenko. 2017. Integration of physical, genetic, and cytogenetic mapping data for cellulose synthase (cesA) genes in flax (Linum usitatissimum L.). Frontiers in Plant Science 8:1467. doi:10.3389/fpls.2017.01467.
   PubMed Web of Science ®Google Scholar
• Zeng, H., Y. Zhu, S. Huang, and Z. Yang. 2010. Analysis of phosphorus-deficient responsive miRNAs and cis-elements from soybean (Glycine max L.). Journal of Plant Physiology 167 (15):1289–97. doi:10.1016/j.jplph.2010.04.017.
   PubMed Web of Science ®Google Scholar
• Zhang, H., Q. Wan, W. Ye, Y. Lv, H. Wu, T. Zhang, and B. Zhang. 2013. Genome-wide analysis of small RNA and novel microRNA discovery during fiber and seed initial development in Gossypium hirsutum. L. Plos One 8 (7):e69743. doi:10.1371/journal.pone.0069743.
   PubMed Web of Science ®Google Scholar
• Zhang, N., and M. K. Deyholos. 2016. RNA-seq analysis of the shoot apex of flax (Linum usitatissimum) to identify phloem fiber specification genes. Frontiers in Plant Science 7 (362):750.
   PubMed Web of Science ®Google Scholar
• Zheng, Z., N. Wang, M. Jalajakumari, L. Blackman, E. Shen, S. Verma, and A. A. Millar. 2020. MiR159 represses a constitutive pathogen defense response in tobacco. Plant Physiology 182 (4):786. doi:10.1104/pp.19.00786.
   Web of Science ®Google Scholar