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Research Paper

Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants

, ORCID Icon, ORCID Icon, ORCID Icon & ORCID Icon
Pages 266-278 | Received 28 Jul 2021, Accepted 26 Dec 2021, Published online: 07 Feb 2022

References

  • Eisenach C. How plants respond to climate change: a new virtual special issue of plant, cell & environment. Plant Cell Environ. 2019;42:2537–2539.
  • Chang C-Y, Lin W-D, Tu S-L. Genome-wide analysis of heat-sensitive alternative splicing in physcomitrella patens. Plant Physiol. 2014;165:826–840.
  • Wu Z, Liang J, Wang C, et al. Alternative splicing provides a mechanism to regulate LlHSFA3 function in response to heat stress in Lily. Plant Physiol. 2019;181:1651–1667.
  • Sanyal RP, Misra HS, Saini A. Heat-stress priming and alternative splicing-linked memory. J Exp Bot. 2018;69:2431–2434.
  • Laloum T, Martín G, Duque P. Alternative splicing control of abiotic stress responses. Trends Plant Sci. 2018;23:140–150.
  • Punzo P, Grillo S, Batelli G. Alternative splicing in plant abiotic stress responses. Biochem Soc Trans. 2020;48:2117–2126.
  • Fragkostefanakis S, Mesihovic A, Simm S, et al. HsfA2 controls the activity of developmentally and stress-regulated heat stress protection mechanisms in tomato male reproductive tissues. Plant Physiol. 2016;170:2461–2477.
  • Frank G, Pressman E, Ophir R, et al. Transcriptional profiling of maturing tomato (Solanum lycopersicum L.) microspores reveals the involvement of heat shock proteins, ROS scavengers, hormones, and sugars in the heat stress response. J Exp Bot. 2009;60:3891–3908.
  • Hu Y, Mesihovic A, Jiménez-Gómez JM, et al. Natural variation in HsfA2 pre-mRNA splicing is associated with changes in thermotolerance during tomato domestication. New Phytol. 2020;225:1297–1310.
  • Guo M, Liu J-H, Ma X, et al. The plant heat stress transcription factors (HSFs): structure, regulation, and function in response to abiotic stresses. Front Plant Sci. 2016;7:114.
  • Fu X-D, Ares M. Context-dependent control of alternative splicing by RNA-binding proteins. Nat Rev Genet. 2014;15:689–701.
  • Kortmann J, Narberhaus F. Bacterial RNA thermometers: molecular zippers and switches. Nat Rev Microbiol. 2012;10:255–265.
  • Chung BYW, Balcerowicz M, Di Antonio M, et al. An RNA thermoswitch regulates daytime growth in Arabidopsis. Nat Plants. 2020;6:522–532.
  • Wachter A, Tunc-Ozdemir M, Grove BC, et al. Riboswitch control of gene expression in plants by splicing and alternative 3ʹ end processing of mRNAs. Plant Cell. 2007;19:3437–3450.
  • Meyer M, Plass M, Pérez-Valle J, et al. Deciphering 3’ss selection in the yeast genome reveals an RNA thermosensor that mediates alternative splicing. Mol Cell. 2011;43:1033–1039.
  • Shiina T, Shimizu Y. Temperature-dependent alternative splicing of precursor mRNAs and its biological significance: a review focused on post-transcriptional regulation of a cold shock protein gene in hibernating mammals. Int J Mol Sci. 2020;21. DOI:10.3390/ijms21207599
  • Bellaousov S, Reuter JS, Seetin MG, et al. RNAstructure: web servers for RNA secondary structure prediction and analysis. Nucleic Acids Res. 2013;41:4.
  • Syed NH, Kalyna M, Marquez Y, et al. Alternative splicing in plants–coming of age. Trends Plant Sci. 2012;17:616–623.
  • Susila H, Nasim Z, Ahn JH. Ambient temperature-responsive mechanisms coordinate regulation of flowering time. Int J Mol Sci. 2018;19. DOI:10.3390/ijms19103196
  • Zhang X, Zhang Y, Wang T, et al. A comprehensive map of intron branch points and lariat RNAs in plants. Plant Cell. 2019;31:956–973.
  • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003;31:3406–3415.
  • Reuter JS, Mathews DH. RNAstructure: software for RNA secondary structure prediction and analysis. BMC Bioinformatics. 2010;11:129.
  • Sklenář V, Bax A. Spin-echo water suppression for the generation of pure-phase two-dimensional NMR spectra. J Magnetic Resonance (1969). 1987;74:469–479.
  • Solyom Z, Schwarten M, Geist L, et al. BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins. J Biomol NMR. 2013;55:311–321.
  • Favier A, Brutscher B. Recovering lost magnetization: polarization enhancement in biomolecular NMR. J Biomol NMR. 2011;49:9–15.
  • Schanda P, Kupce E, Brutscher B. SOFAST-HMQC experiments for recording two-dimensional heteronuclear correlation spectra of proteins within a few seconds. J Biomol NMR. 2005;33:199–211.
  • Mergny J-L, Lacroix L. Analysis of thermal melting curves. Oligonucleotides. 2003;13:515–537.