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Research Paper

Decoding LINC00052 role in breast cancer by bioinformatic and experimental analyses

, , , , , , , , & ORCID Icon show all
Pages 1-11 | Accepted 09 May 2024, Published online: 04 Jun 2024

References

  • Bray F, Ferlay J, Laversanne M. Cancer incidence in five continents: inclusion criteria, highlights from volume X and the global status of cancer registration. Int J Cancer. 2015;137(9):2060–2071. doi: 10.1002/ijc.29670
  • Bastien RR, Rodríguez-Lescure Á, Ebbert MT. PAM50 Breast Cancer Subtyping by RT-qPCRand Concordance with Standard Clinical Molecular Markers. BMC Med Genomics. 2012;5(1):44. doi: 10.1186/1755-8794-5-44
  • Yersal O. Biological subtypes of breast cancer: Prognostic and therapeutic implications. World J Clin Oncol. 2014;5(3):412–424. doi: 10.5306/wjco.v5.i3.412
  • Zhang K, Shi Z-M, Chang Y-N. The ways of action of long non-coding RNAs in cytoplasm and nucleus. Gene. 2014;547(1):1–9. doi: 10.1016/j.gene.2014.06.043
  • Choudhari R, Sedano MJ, Harrison AL, et al. Long noncoding RNAs in cancer: From discovery to therapeutic targets. Adv Clin Chem. 2020;95:105–147.
  • Slack FJ, Chinnaiyan AM. The role of non-coding RNAs in oncology. Cell. 2019;179(5):1033–1055. doi: 10.1016/j.cell.2019.10.017
  • Statello L, Guo C-J, Chen L-L. Gene regulation by long non-coding RNAs and its biological functions. Nat Rev Mol Cell Biol. 2021;22(2):96–118. doi: 10.1038/s41580-020-00315-9
  • Davis CA, Hitz BC, Sloan CA. The encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res. 2018;46(D1):D794–D801. doi: 10.1093/nar/gkx1081
  • Schlackow M, Nojima T, Gomes T. Distinctive Patterns of Transcription and RNA Processing for Human lincRnas. Mol Cell. 2017;65(1):25–38. doi: 10.1016/j.molcel.2016.11.029
  • Yan S, Shan X, Chen K. LINC00052/miR-101-3p axis inhibits cell proliferation and metastasis by targeting SOX9 in hepatocellular carcinoma. Gene. 2018;679:138–149. doi: 10.1016/j.gene.2018.08.038
  • Zhu L, Yang N, Chen J. LINC00052 upregulates EPB41L3 to inhibit migration and invasion of hepatocellular carcinoma by binding miR-452-5p. Oncotarget. 2017;8(38):63724–63737. doi: 10.18632/oncotarget.18892
  • Xiong X, Shi Q, Yang X. LINC00052 functions as a tumor suppressor through negatively modulating miR-330-3p in pancreatic cancer. J Cell Physiol. 2019;234(9):15619–15626. doi: 10.1002/jcp.28209
  • Piao Y, Li M, Zhang Q. LINC00052 suppressed glioma cell proliferation and invasion by downregulating insulin-like growth factor 2. Transl Cancer Res. 2019;8(4):1517–1522. doi: 10.21037/tcr.2019.07.55
  • Xu CF, Liu P, Tan J. Long noncoding RNA LINC00052 suppressed the proliferation, migration and invasion of glioma cells by upregulating KLF6. Eur Rev Med Pharmacol Sci. 2019;23(11):4822–4827. doi: 10.26355/eurrev_201906_18068
  • Mingming Lv PX, Wu Y, Huang 2 L. LncRNAs as new biomarkers to differentiate triple negative breast cancer from non-triple negative breast cancer. Oncotarget. 2016;11(11):13047–13059. doi: 10.18632/oncotarget.7509
  • Munoz-Galindo L, Melendez-Zajgla J, Pacheco-Fernández T. Changes in the transcriptome profile of breast cancer cells grown as spheroids. Biochem Biophys Res Commun. 2019;516(4):1258–1264. doi: 10.1016/j.bbrc.2019.06.155
  • Pacheco-Marin R, Melendez-Zajgla J, Castillo-Rojas G. Transcriptome profile of the early stages of breast cancer tumoral spheroids. Sci Rep. 2016;6(1):23373. doi: 10.1038/srep23373
  • Usman S, Jamal A, Bushaala A. Transcriptome analysis reveals vimentin-induced disruption of cell–cell associations augments breast cancer cell migration. Cells. 2022;11(24):4035. doi: 10.3390/cells11244035
  • Shan Y, Ying R, Jia Z. LINC00052 promotes gastric cancer cell proliferation and metastasis via activating the Wnt/β-catenin signaling pathway. Oncol Res. 2017;25(9):1589–1599. doi: 10.3727/096504017X14897896412027
  • Sanchez-Lopez JM, Mandujano-Tinoco EA, Garcia-Venzor A. Integrative analysis of transcriptional profile reveals LINC00052 as a suppressor of breast cancer cell migration. Cancer Biomark. 2021;30(4):365–379. doi: 10.3233/CBM-200337
  • Salameh A, Fan X, Choi B-K. HER3 and LINC00052 interplay promotes tumor growth in breast cancer. Oncotarget. 2017;8(4):6526–6539. doi: 10.18632/oncotarget.14313
  • Dong M, Xu T, Li H. LINC00052 promotes breast cancer cell progression and metastasis by sponging miR‑145‑5p to modulate TGFBR2 expression. Oncol Lett. 2021;21(5):368. doi: 10.3892/ol.2021.12629
  • Huang X, Yu J, Lai S. Long non-coding RNA LINC00052 targets miR-548p/Notch2/Pyk2 to modulate tumor budding and metastasis of human breast cancer. Biochem Genet. 2023;61(1):336–353. doi: 10.1007/s10528-022-10255-y
  • Lanczky A, Gyorffy B. Web-based survival analysis tool tailored for medical research (KMplot): development and implementation. J Med Internet Res. 2021;23(7):e27633. doi: 10.2196/27633
  • Prat A, Pineda, E, Adamo, B, et al. Clinical implications of the intrinsic molecular subtypes of breast cancer. Breast. 2015;24(Suppl 2):S26–35. doi: 10.1016/j.breast.2015.07.008
  • Jezequel P, Frenel J-S, Campion L. bc-GenExMiner 3.0: new mining module computes breast cancer gene expression correlation analyses. Database (Oxford). 2013;2013:bas060. doi: 10.1093/database/bas060
  • Kang J, Tang Q, He J. Rnainter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. Nucleic Acids Res. 2022;50(D1):D326–D332. doi: 10.1093/nar/gkab997
  • Feng C, Song C, Liu Y. KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors. Nucleic Acids Res. 2020;48(D1):D93–D100. doi: 10.1093/nar/gkz881
  • Li JH, Liu S, Zhou H. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res. 2014;42(Database issue):D92–7. doi: 10.1093/nar/gkt1248
  • Kang YJ, Yang D-C, Kong L. CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features. Nucleic Acids Res. 2017;45(W1):W12–W16. doi: 10.1093/nar/gkx428
  • Volders PJ, Anckaert J, Verheggen K. Lncipedia 5: towards a reference set of human long non-coding RNAs. Nucleic Acids Res. 2019;47(D1):D135–D139. doi: 10.1093/nar/gky1031
  • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta C(T)) method. Methods. 2001;25(4):402–408. doi: 10.1006/meth.2001.1262
  • Kumaravel TS, Vilhar B, Faux SP. Comet assay measurements: a perspective. Cell Biol Toxicol. 2009;25(1):53–64. doi: 10.1007/s10565-007-9043-9
  • Ruiz-Silvestre A, Garcia-Venzor A, Ceballos-Cancino G, et al. Transcriptomic changes in cisplatin-resistant MCF-7 cells. Int J Mol Sci. 2024 Mar 29;25(7):3820. doi: 10.3390/ijms25073820
  • Choi SW, Kim HW, Nam JW. The small peptide world in long noncoding RNAs. Brief Bioinform. 2019;20(5):1853–1864. doi: 10.1093/bib/bby055
  • Wu P, Mo Y, Peng M. Emerging role of tumor-related functional peptides encoded by lncRNA and circRNA. Mol Cancer. 2020;19(1):22. doi: 10.1186/s12943-020-1147-3
  • Subramanian A, Tamayo P, Mootha VK. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA. 2005;102(43):15545–15550. doi: 10.1073/pnas.0506580102
  • Hua H, Zhang H, Kong Q. Mechanisms for estrogen receptor expression in human cancer. Exp Hematol Oncol. 2018;7(1):24. doi: 10.1186/s40164-018-0116-7
  • Choo SW, Zhong Y, Sendler E. Estrogen distinctly regulates transcription and translation of lncRnas and pseudogenes in breast cancer cells. Genomics. 2022;114(4):110421. doi: 10.1016/j.ygeno.2022.110421
  • Taheri M, Shoorei H, Dinger ME. Perspectives on the role of non-coding RNAs in the regulation of expression and function of the estrogen receptor. Cancers (Basel). 2020;12(8):2162. doi: 10.3390/cancers12082162
  • Bjorklund SS, Aure MR, Häkkinen J. Subtype and cell type specific expression of lncRnas provide insight into breast cancer. Commun Biol. 2022;5(1):834. doi: 10.1038/s42003-022-03559-7
  • Lanceta L, O’Neill C, Lypova N. Transcriptomic profiling identifies differentially expressed genes in palbociclib-resistant ER+ MCF7 breast cancer cells. Genes (Basel). 2020;11(4):467. doi: 10.3390/genes11040467
  • Wang QK, Guo HR, Xie GY. [The expression of LINC00052 during glycidyl methacrylate-induced malignant transformation of 16HBE cells]. Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi. 2019;37(11):806–809. doi: 10.3760/cma.j.issn.1001-9391.2019.11.002