TEX264 is a major receptor for mammalian reticulophagy

References

• Klionsky DJ, Abdelmohsen K, Abe A, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 2016;12(1):1–222. PubMed PMID: 26799652; PubMed Central PMCID: PMCPMC4835977.
   PubMed Web of Science ®Google Scholar
• Nascimbeni AC, Giordano F, Dupont N, et al. ER-plasma membrane contact sites contribute to autophagosome biogenesis by regulation of local PI3P synthesis. Embo J. 2017 Jul 14;36(14):2018–2033. PubMed PMID: 28550152; PubMed Central PMCID: PMCPMC5509996. eng.
   PubMed Web of Science ®Google Scholar
• Axe EL, Walker SA, Manifava M, et al. Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum. J Cell Biol. 2008 Aug 25;182(4):685–701. PubMed PMID: 18725538; PubMed Central PMCID: PMCPMC2518708. eng.
   PubMed Web of Science ®Google Scholar
• Noda NN, Kumeta H, Nakatogawa H, et al. Structural basis of target recognition by Atg8/LC3 during selective autophagy. Genes Cells. 2008 Dec;13(12):1211–1218. PubMed PMID: 19021777; eng.
   PubMed Web of Science ®Google Scholar
• Birgisdottir AB, Lamark T, Johansen T. The LIR motif - crucial for selective autophagy. J Cell Sci. 2013 Aug 1;126(Pt 15):3237–3247. PubMed PMID: 23908376; eng.
   PubMed Web of Science ®Google Scholar
• Mochida K, Oikawa Y, Kimura Y, et al. Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus. Nature. 2015 Jun 18;522(7556):359–362. PubMed PMID: 26040717. eng.
   PubMed Web of Science ®Google Scholar
• Chen S, Cui Y, Parashar S, et al. ER-phagy requires Lnp1, a protein that stabilizes rearrangements of the ER network. Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):E6237–e6244. PubMed PMID: 29915089; PubMed Central PMCID: PMCPMC6142256. eng.
   PubMed Web of Science ®Google Scholar
• Cui Y, Parashar S, Zahoor M, et al. A COPII subunit acts with an autophagy receptor to target endoplasmic reticulum for degradation. Science (New York, NY). 2019 Jul 5;365(6448):53–60. PubMed PMID: 31273116; eng.
   Google Scholar
• Khaminets A, Heinrich T, Mari M, et al. Regulation of endoplasmic reticulum turnover by selective autophagy. Nature. 2015 Jun 18;522(7556):354–358. PubMed PMID: 26040720. eng.
   PubMed Web of Science ®Google Scholar
• Fumagalli F, Noack J, Bergmann TJ, et al. Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery. Nat Cell Biol. 2016 Nov;18(11):1173–1184. PubMed PMID: 27749824. eng.
   PubMed Web of Science ®Google Scholar
• Grumati P, Morozzi G, Holper S, et al. Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy. eLife. 2017 Jun 15;6. PubMed PMID: 28617241; PubMed Central PMCID: PMCPMC5517149. eng.
   PubMed Web of Science ®Google Scholar
• Smith MD, Harley ME, Kemp AJ, et al. CCPG1 is a non-canonical autophagy cargo receptor essential for ER-phagy and pancreatic ER proteostasis. Dev Cell. 2018 Jan 22;44(2):217–232.e11. PubMed PMID: 29290589; PubMed Central PMCID: PMCPMC5791736. eng.
   PubMed Web of Science ®Google Scholar
• Chen Q, Xiao Y, Chai P, et al. ATL3 is a tubular ER-phagy receptor for GABARAP-mediated selective autophagy. Curr Biol. 2019 Mar 4;29(5):846–855.e6. PubMed PMID: 30773365. eng.
   PubMed Web of Science ®Google Scholar
• Chino H, Hatta T, Natsume T, et al. Intrinsically disordered protein TEX264 mediates ER-phagy. Mol Cell. 2019 Jun 6;74(5):909–921.e6. PubMed PMID: 31006538. eng.
   PubMed Web of Science ®Google Scholar
• An H, Ordureau A, Paulo JA, et al. TEX264 is an endoplasmic reticulum-resident ATG8-interacting protein critical for ER remodeling during nutrient stress. Mol Cell. 2019 Jun 6;74(5):891–908.e10. PubMed PMID: 31006537. eng.
   PubMed Web of Science ®Google Scholar
• McAlister GC, Nusinow DP, Jedrychowski MP, et al. MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes. Anal Chem. 2014 Jul 15;86(14):7150–7158. PubMed PMID: 24927332; PubMed Central PMCID: PMCPMC4215866. eng.
   PubMed Web of Science ®Google Scholar
• Katayama H, Kogure T, Mizushima N, et al. A sensitive and quantitative technique for detecting autophagic events based on lysosomal delivery. Chem Biol. 2011 Aug 26;18(8):1042–1052. PubMed PMID: 21867919; eng.
   PubMedGoogle Scholar
• Hayashi-Nishino M, Fujita N, Noda T, et al. A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation. Nat Cell Biol. 2009 Dec;11(12):1433–1437. PubMed PMID: 19898463; eng.
   PubMed Web of Science ®Google Scholar
• McGuffin LJ, Bryson K, Jones DT. The PSIPRED protein structure prediction server. Bioinformatics. 2000 Apr;16(4):404–405. PubMed PMID: 10869041; eng.
   PubMed Web of Science ®Google Scholar
• Darling AL, Uversky VN. Intrinsic disorder and posttranslational modifications: the darker side of the biological dark matter. Front Genet. 2018;9:158. PubMed PMID: 29780404; PubMed Central PMCID: PMCPMC5945825. eng.
   PubMed Web of Science ®Google Scholar
• Uversky VN. Functional roles of transiently and intrinsically disordered regions within proteins. Febs J. 2015 Apr;282(7):1182–1189. PubMed PMID: 25631540; eng.
   PubMed Web of Science ®Google Scholar
• Van Roey K, Uyar B, Weatheritt RJ, et al. Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation. Chem Rev. 2014 Jul 9;114(13):6733–6778. PubMed PMID: 24926813; eng.
   PubMed Web of Science ®Google Scholar
• Popelka H, Klionsky DJ. Analysis of the native conformation of the LIR/AIM motif in the Atg8/LC3/GABARAP-binding proteins. PubMed PMID: 26565669; PubMed Central PMCID: PMCPMC4835208. eng Autophagy. 2015;1112:2153–2159.
   PubMed Web of Science ®Google Scholar
• Yamamoto H, Fujioka Y, Suzuki SW, et al. The intrinsically disordered protein Atg13 mediates supramolecular assembly of autophagy initiation complexes. Dev Cell. 2016 Jul 11;38(1):86–99. PubMed PMID: 27404361.
   PubMed Web of Science ®Google Scholar