Comparison analysis of metabolite profiling in seeds and bark of Ulmus parvifolia, a Chinese medicine species

References

• Thakur R, Karnosky D. Micropropagation and germplasm conservation of central park splendor Chinese elm (Ulmus parvifolia Jacq. ‘A/Ross Central Park’) trees. Plant Cell Rep. 2007;26(8):1171–10. doi:10.1007/s00299-007-0334-7.
   PubMed Web of Science ®Google Scholar
• Li JX, Zhou FQ, Zhang ZR. Medica flora of Shandong. Xi’an: Xi’an Jiaotong University Press; 2013.
   Google Scholar
• Fujian Academy of Traditional Chinese Medicine. Records of Fujian medicines. Vol. 2. Fuzhou (Fujian): Fujian Science and Technology Press; 1994.
   Google Scholar
• Duke JA, Ayensu ES. Medicinal plants of China. Vol. 2, Algonac (Michigan): Reference Publications; 1985.
   Google Scholar
• Mina SA, Melek FR, Adeeb RM, Hagag EG. LC/ESI-MS/MS profiling of Ulmus parvifolia extracts and evaluation of its anti-inflammatory, cytotoxic, and antioxidant activities. Zeitschrift Für Naturforschung C. 2016;71(11–12):415–421. doi:10.1515/znc-2016-0057.
   PubMed Web of Science ®Google Scholar
• Lee YY, Kim M, Irfan M, Yuk HJ, Kim DS, Lee SE, Kim SH, Kim S, Kim SD, Rhee MH. Ulmus parvifolia Jacq. exhibits antiobesity properties and potentially induces browning of white adipose tissue. J Evidence-Based Complementary Altern Med. 2020;2020:9358563.
   Google Scholar
• Irfan M, Kwon H-W, Lee D-H, Shin J-H, Yuk HJ, Kim D-S, Hong S-B, Kim S-D, Rhee MH. Ulmus parvifolia modulates platelet functions and inhibits thrombus formation by regulating integrin αIIbβ3 and cAMP signaling. Front pharmacol. 2020;11:698. doi:10.3389/fphar.2020.00698.
   PubMed Web of Science ®Google Scholar
• M MH, El-Amin S, Refahy LA, Soliman E-SA, Mansour WA, Taleb HMA, Morsi E. Anticancer and antiviral estimation of three Ulmus pravifolia extracts and their chemical constituents. Orient J Chem. 2015;31(3):1621–1634. doi:10.13005/ojc/310341.
   Google Scholar
• Kang MC, Yumnam S, Park WS, So HM, Kim KH, Shin MC, Ahn M-J, Kim SY. Ulmus parvifolia accelerates skin wound healing by regulating the expression of MMPs and TGF-β. J Clin Med. 2019;9(1):59. doi:10.3390/jcm9010059.
   PubMed Web of Science ®Google Scholar
• Kim SP, Lee SJ, Nam SH, Friedmana M. Elm tree (Ulmus parvifolia) bark bioprocessed with mycelia of shiitake (Lentinus edodes) mushrooms in liquid culture: composition and mechanism of protection against allergic asthma in mice. J Agric Food Chem. 2016;64(4):773–784. doi:10.1021/acs.jafc.5b04972.
   PubMed Web of Science ®Google Scholar
• Chen FC, Lin YM, Chen AH. Sesquiterpenes from the heartwood of Chinese elm. Phytochemistry. 1972;11(3):1190–1191. doi:10.1016/S0031-9422(00)88495-2.
   Web of Science ®Google Scholar
• Moon RH, Rim GR. Studies on the constituents of Ulmus parvifolia. Korean J Pharmacogn. 1995;26:1–7.
   Google Scholar
• Ogura T, Bamba T, Fukusaki E. Development of a practical metabolite identification technique for non-targeted metabolomics. J Chromatogr A. 2013;1301:73–79. doi:10.1016/j.chroma.2013.05.054.
   PubMed Web of Science ®Google Scholar
• Wei R, Li G, Seymour AB. High-throughput and multiplexed LC/MS/MRM method for targeted metabolomics. Analytical Chemistry. 2010;82(13):5527–5533. doi:10.1021/ac100331b.
   PubMed Web of Science ®Google Scholar
• Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA. Untargeted metabolomics strategies-challenges and emerging directions. J Am Soc Mass Spectrom. 2016;27(12):1897–1905. doi:10.1007/s13361-016-1469-y.
   PubMed Web of Science ®Google Scholar
• Zhou JN, Hou DH, Zou WQ, Wang JH, Luo R, Wang M, Yu H. Comparison of widely targeted metabolomics and untargeted metabolomics of wild Ophiocordyceps sinensis. Molecules. 2022;27(11):3645. doi:10.3390/molecules27113645.
   PubMed Web of Science ®Google Scholar
• Arapitsas P, Ugliano M, Marangon M, Piombino P, Rolle L, Gerbi V, Versari A, Mattivi F. Use of untargeted liquid chromatography-mass spectrometry metabolome to discriminate Italian monovarietal red wines, produced in their different terroirs. J Agric Food Chem. 2020;68(47):13353–13366. doi:10.1021/acs.jafc.0c00879.
   PubMed Web of Science ®Google Scholar
• Theodoridis GA, Gika HG, Want EJ, Wilson ID. Liquid chromatography-mass spectrometry based global metabolite profiling: a review. Anal Chim Acta. 2012;711:7–16. doi:10.1016/j.aca.2011.09.042.
   PubMed Web of Science ®Google Scholar
• Wu C, Wang HJ, Liu ZY, Xu B, Li ZJ, Song PP, Chao ZM. Untargeted metabolomics coupled with chemometrics for leaves and stem barks of dioecious Morus alba L. Metabolites 2022; 12.
   Google Scholar
• Xie CL, Yan SW, Zhang ZM, Gong WB, Zhu ZH, Zhou YJ, Yan L, Hu Z, Ai L, Peng Y, et al. Mapping the metabolic signatures of fermentation broth, mycelium, fruiting body and spores powder from Ganoderma lucidum by untargeted metabolomics. LWT-Food Sci Technol. 2020;129:109494. doi:10.1016/j.lwt.2020.109494.
   Web of Science ®Google Scholar
• Wu Y, Yang H, Yang H, Zhang C, Lyu L, Li W, Wu W. A physiological and metabolomic analysis reveals the effect of shading intensity on blueberry fruit quality. Food Chemistry: X. 2022;15:100367. doi:10.1016/j.fochx.2022.100367.
   PubMedGoogle Scholar
• Wu QK, Zhao X, Chen C, Zhang ZH, Yu FY. Metabolite profiling and classification of developing Styrax tonkinensis kernels. Metabolites. 2020;10(1):21. doi:10.3390/metabo10010021.
   PubMed Web of Science ®Google Scholar
• Schoenbachler JL, Hughey JJ. pmparser and PMDB: resources for large-scale, open studies of the biomedical literature. PeerJ. 2021;9:e11071. doi:10.7717/peerj.11071.
   PubMed Web of Science ®Google Scholar
• Sun C, Tang T, Tang W, Sup L, Zhang H, Xia Z, Zhao HY, Han YX, Lin LB. Plant genomic imprinting and its effect on seed development. Agric Sci Technol. 2017;18:984–1032.
   Google Scholar
• Y W, Yb S, Fh S. Research progress on transcription factors regulating plant seed development. Biotechnol Bull. 2019;35:150–159.
   Google Scholar
• Ferreyra MLF, Rius SP, Casati P. Flavonoids: biosynthesis, biological functions, and biotechnological applications. Front Plant Sci. 2012;3:222. doi:10.3389/fpls.2012.00222.
   PubMed Web of Science ®Google Scholar
• Guo J, Wu Y, Jiang M, Wu C, Wang G. An LC–MS-based metabolomic approach provides insights into the metabolite profiles of Ginkgo biloba L. at different developmental stages and in various organs. Int Food Res J. 2022;159:111644. doi:10.1016/j.foodres.2022.111644.
   PubMedGoogle Scholar
• Ross JA, Kasum CM. DIETARY F LAVONOIDS: bioavailability, metabolic effects, and safety. Annu Rev Nutr. 2002;22(1):19–34. doi:10.1146/annurev.nutr.22.111401.144957.
   PubMed Web of Science ®Google Scholar
• Faggio C, Sureda A, Morabito S, Sanches-Silva A, Mocan A, Nabavi SF, Nabavi SM. Flavonoids and platelet aggregation: a brief review. Eur J Pharmacol. 2017;807:91–101. doi:10.1016/j.ejphar.2017.04.009.
   PubMed Web of Science ®Google Scholar
• Chua LS. A review on plant-based rutin extraction methods and its pharmacological activities. J Ethnopharmacol. 2013;150(3):805–817. doi:10.1016/j.jep.2013.10.036.
   PubMed Web of Science ®Google Scholar
• Musial C, Kuban-Jankowska A, Gorska-Ponikowska M. Beneficial properties of green tea catechins. Int J Mol Sci. 2020;21(5):1744. doi:10.3390/ijms21051744.
   PubMed Web of Science ®Google Scholar
• Cherian S, Augusti KT. Antidiabetic effects of a glycoside of leucopelargonidin isolated from Ficus bengalensis Linn. Indian J Exp Biol. 1993;31:26–29.
   PubMedGoogle Scholar
• Gonzalez-Abuin N, Pinent M, Casanova-Marti A, Arola L, Blay M, Ardevol A. Procyanidins and their healthy protective effects against type 2 diabetes. Curr Med Chem. 2015;22(1):39–50. doi:10.2174/0929867321666140916115519.
   PubMed Web of Science ®Google Scholar
• Lee YS, Kim JK, Bae YS, Won MH, Kang IJ, Lim SS. Inhibitory effect of glucodistylin from the bark of Quercus acutissima on human recombinant aldose reductase and sorbitol accumulation. Arch Pharmacal Res. 2011;34(2):211–215. doi:10.1007/s12272-011-0205-1.
   PubMed Web of Science ®Google Scholar
• Yin SW, Zhang XX, Lai FY, Liang TZ, Wen JY, Lin WY, Qiu J, Liu S, Li L. Trilobatin as an HIV-1 entry inhibitor targeting the HIV-1 Gp41 envelope. FEBS Lett. 2018;592(13):2361–2377. doi:10.1002/1873-3468.13113.
   PubMed Web of Science ®Google Scholar
• Pfander P, Stoll H. Terpenoid glycosides. Nat Prod Rep. 1991;8(1):69–95. doi:10.1039/np9910800069.
   PubMed Web of Science ®Google Scholar
• Schwab W, Fischer T, Wust M. Terpene glucoside production: improved biocatalytic processes using glycosyltransferases. Eng Life Sci. 2015;15(4):376–386. doi:10.1002/elsc.201400156.
   Web of Science ®Google Scholar
• Guo R, Liu Y, Pan J, Guan W, Yang B-Y, Kuang H-X. A new sesquiterpenoid with cytotoxic and anti-inflammatory activity from the leaves of Datura metel L. Nat Prod Res. 2021;35(4):607–613. doi:10.1080/14786419.2019.1590715.
   PubMed Web of Science ®Google Scholar
• Wang C, Mao C, Lou Y, Xu J, Wang Q, Zhang Z, Tang Q, Zhang X, Xu H, Feng Y, et al. Monotropein promotes angiogenesis and inhibits oxidative stress-induced autophagy in endothelial progenitor cells to accelerate wound healing. J Cell Mol Med. 2018;22(3):1583–1600. doi:10.1111/jcmm.13434.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Chen Y, Li B, Ding P, Jin D, Hou S, Cai X, Sheng X. The effect of monotropein on alleviating cisplatin-induced acute kidney injury by inhibiting oxidative damage, inflammation and apoptosis. Biomed Pharmacother. 2020;129:110408. doi:10.1016/j.biopha.2020.110408.
   PubMed Web of Science ®Google Scholar
• Liu YK, Jian YQ, Cao MR, Wang B, Qiu YX, Yuan HW, Zhou X, Li B, Sheng W, Peng C, et al. Seco-tetracyclic and seco-pentacyclic triterpenoids from nature: phytochemistry, biological activity: a review. Mini Rev Org Chem. 2022;19(2):188–230. doi:10.2174/1570193X18666210311164309.
   Web of Science ®Google Scholar
• Pollier J, Goossens A. Oleanolic acid. Phytochemistry. 2012;77:10–15. doi:10.1016/j.phytochem.2011.12.022.
   PubMed Web of Science ®Google Scholar
• Ghosh J, Sil PC. Arjunolic acid: a new multifunctional therapeutic promise of alternative medicine. Biochimie. 2013;95(6):1098–1109. doi:10.1016/j.biochi.2013.01.016.
   PubMed Web of Science ®Google Scholar
• Parvizpour S, Masoudi-Sobhanzadeh Y, Pourseif MM, Barzegari A, Razmara J, Omidi Y. Pharmacoinformatics-based phytochemical screening for anticancer impacts of yellow sweet clover, Melilotus officinalis (Linn.) Pall. Comput Biol Med. 2021;138:104921. doi:10.1016/j.compbiomed.2021.104921.
   PubMed Web of Science ®Google Scholar
• Son J, Lee SY. Ursonic acid exerts inhibitory effects on matrix metalloproteinases via ERK signaling pathway. Chem-Biol Interact. 2020;315: 108910.
   Web of Science ®Google Scholar
• Wu Y-L, Han F, Luan -S-S, Ai R, Zhang P, Li H, Chen L-X. Triterpenoids from Ganoderma lucidum and their potential anti-inflammatory effects. J Agric Food Chem. 2019;67(18):5147–5158. doi:10.1021/acs.jafc.9b01195.
   PubMed Web of Science ®Google Scholar
• Alqahtani AS, Hidayathulla S, Rehman MT, ElGamal AA, Al-Massarani S, Razmovski-Naumovski V, Alqahtani MS, El Dib RA, AlAjmi MF. Alpha-amylase and alpha-glucosidase enzyme inhibition and antioxidant potential of 3-Oxolupenal and katononic acid isolated from Nuxia oppositifolia. Biomolecules. 2020;10:1–19.
   Web of Science ®Google Scholar
• Macalalad MAB, Gonzales AA. In-silico screening and identification of phytochemicals from Centella asiatica as potential inhibitors of sodium-glucose co-transporter 2 for treating diabetes. J Biomol Struct Dyn. 2021;1–18. doi:10.1080/07391102.2021.1969282.
   PubMed Web of Science ®Google Scholar
• Chen Q-F, Liu Z-P, Wang F-P. Natural sesquiterpenoids as cytotoxic anticancer agents. Mini Rev Med Chem. 2011;11(13):1153–1164. doi:10.2174/138955711797655399.
   PubMed Web of Science ®Google Scholar
• Sut S, Maggi F, Nicoletti M, Baldan V, Dall`Acqua S. New drugs from old natural compounds: scarcely investigated sesquiterpenes as new possible therapeutic agents. Curr Med Chem. 2018;25(10):1241–1258. doi:10.2174/0929867324666170404150351.
   PubMed Web of Science ®Google Scholar
• Sarkar C, Quispe C, Jamaddar S, Hossain R, Ray P, Mondal M, Abdulwanis Mohamed Z, Sani Jaafaru M, Salehi B, Islam MT, et al. Therapeutic promises of ginkgolide A: a literature-based review. Biomed Pharmacother. 2020;132:110908. doi:10.1016/j.biopha.2020.110908.
   PubMed Web of Science ®Google Scholar
• Wei C, Li D, Liu Y, Wang W, Qiu T. Curdione induces antiproliferation effect on human uterine leiomyosarcoma via targeting IDO1. Front Oncol. 2021;11:637024. doi:10.3389/fonc.2021.637024.
   PubMed Web of Science ®Google Scholar
• Liu P, Miao K, Zhang L, Mou Y, Xu Y, Xiong W, Yu J, Wang Y. Curdione ameliorates bleomycin-induced pulmonary fibrosis by repressing TGF-β-induced fibroblast to myofibroblast differentiation. Respiratory Research. 2020;21(1):58. doi:10.1186/s12931-020-1300-y.
   PubMed Web of Science ®Google Scholar
• Zhou L, Zheng G, Li H, Gao B, Guoruoluo Y, Tang W, Yao G, Zhang Y. Highly oxygenated isoryanodane diterpenoids from the leaves of Cinnamomum cassia and their immunomodulatory activities. Phytochemistry. 2022;196:113077. doi:10.1016/j.phytochem.2021.113077.
   PubMed Web of Science ®Google Scholar
• Ma J, Shojaie A, Michailidis G. A comparative study of topology-based pathway enrichment analysis methods. BMC Bioinformatics. 2019;20(1):546. doi:10.1186/s12859-019-3146-1.
   PubMed Web of Science ®Google Scholar
• Teng H, Fang T, Lin QY, Song HB, Liu B, Chen L. Red raspberry and its anthocyanins: bioactivity beyond antioxidant capacity. Trends Food Sci Technol. 2017;66:153–165. doi:10.1016/j.tifs.2017.05.015.
   Web of Science ®Google Scholar
• Shen N, Wang T, Gan Q, Liu S, Wang L, Jin B. Plant flavonoids: classification, distribution, biosynthesis, and antioxidant activity. Food Chem. 2022;383:132531. doi:10.1016/j.foodchem.2022.132531.
   PubMed Web of Science ®Google Scholar