A miniature illumination probe in lightsheet fluorescence microscopy for real-time imaging injured adult zebrafish’s ventricular recuperation

References

• So, P. T. C.; Dong, C. Y.; Masters, B. R.; Berland, K. M. Two-Photon Excitation Fluorescence Microscopy. Annu. Rev. Biomed. Eng. 2000, 2, 399–429. DOI: 10.1146/annurev.bioeng.2.1.399.
   PubMed Web of Science ®Google Scholar
• Ragazzi, M.; Piana, S.; Longo, C.; Castagnetti, F.; Foroni, M.; Ferrari, G.; Gardini, G.; Pellacani, G. Fluorscence Confocal Microscopy for Pathologists. Mod. Pathol. 2014, 27, 460–471. DOI: 10.1038/modpathol.2013.158.
   PubMed Web of Science ®Google Scholar
• Hu, P. S.; Hsueh, C. M.; Su, P. J.; Chen, W. L.; Hovhannisyan, V. A.; Chen, S. J.; Tsai, T.-H.; Dong, C.-Y. The Use of Second-Order Susceptibility as Contrast Mechanism for Label-Free Imaging of Biological Tissue. IEEE J. Select. Topics Quantum Electron. 2012, 18, 1326–1334. DOI: 10.1109/JSTQE.2011.2174619.
   Web of Science ®Google Scholar
• Helmchen, F.; Denk, W. Deep Tissue Two-Photon Microscopy. Nat. Methods. 2005, 2, 932–940. DOI: 10.1038/nmeth818.
   PubMed Web of Science ®Google Scholar
• Svoboda, K.; Yasuda, R. Principles of Two-Photon Excitation Microscopy and Its Applications to Neuroscience. Neuron. 2006, 50, 823–839. DOI: 10.1016/j.neuron.2006.05.019.
   PubMed Web of Science ®Google Scholar
• Huisken, J.; Swoger, J.; Del Bene, F.; Wittbrodt, J.; Stelzer, E. H. K. Optical Sectioning Deep inside Live Embryos by Selective Plane Illumination Microscopy. Science. 2004, 305, 1007–1009., DOI: 10.1126/science.1100035.
   PubMed Web of Science ®Google Scholar
• Chen, B.-C.; Legant, W. R.; Wang, K.; Shao, L.; Milkie, D. E.; Davidson, M. W.; Janetopoulos, C.; Wu, X. S.; Hammer, J. A.; Liu, Z.; et al. Lattice Light-Sheet Microscopy: imaging Molecules to Embryos at High Spatiotemporal Resolution. Science. 2014, 346, 1257998. DOI: 10.1126/science.1257998.
   PubMed Web of Science ®Google Scholar
• Wu, Y.; Wawrzusin, P.; Senseney, J.; Fischer, R. S.; Christensen, R.; Santella, A.; York, A. G.; Winter, P. W.; Waterman, C. M.; Bao, Z.; et al. Spatially Isotropic Four-Dimensional Imaging with Dual-View Plane Illumination Microscopy. Nat. Biotechnol. 2013, 31, 1032–1038. DOI: 10.1038/nbt.2713.
   PubMed Web of Science ®Google Scholar
• Truong, T. V.; Supatto, W.; Koos, D. S.; Choi, J. M.; Fraser, S. E. Deep and Fast Live Imaging with Two-Photon Scanned Light-Sheet Microscopy. Nat. Methods. 2011, 8, 757–760. DOI: 10.1038/nmeth.1652.
   PubMed Web of Science ®Google Scholar
• Keller, P. J.; Schmidt, A. D.; Wittbrodt, J.; Stelzer, E. H. Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy. Science. 2008, 322, 1065–1069. DOI: 10.1126/science.1162493.
   PubMed Web of Science ®Google Scholar
• Ahrens, M. B.; Orger, M. B.; Robson, D. N.; Li, J. M.; Keller, P. J. Whole-Brain Functional Imaging at Cellular Resolution Using Light-Sheet Microscopy. Nat. Methods. 2013, 10, 413–420. DOI: 10.1038/nmeth.2434.
   PubMed Web of Science ®Google Scholar
• Liu, Y.; Dale, S.; Ball, R.; VanLeuven, A. J.; Sornborger, A.; Lauderdale, J. D.; Kner, P. Imaging Neural Events in Zebrafish Larvae with Linear Structured Illumination Light Sheet Fluorescence Microscopy. Neurophotonics. 2019, 6, 015009. DOI: 10.1117/1.NPh.6.1.015009.
   PubMed Web of Science ®Google Scholar
• Lee, J.; Fei, P.; Packard, R. R. S.; Kang, H.; Xu, H.; Baek, K. I.; Jen, N.; Chen, J.; Yen, H.; Kuo, C.-C. J.; et al. 4-Dimensional Light-Sheet Microscopy to Elucidate Shear Stress Modulation of Cardiac Trabeculation. J. Clin. Invest. 2016, 126, 1679–1690. DOI: 10.1172/JCI83496.
   PubMed Web of Science ®Google Scholar
• Fahrbach, F. O..; Voigt, F. F.; Schmid, B. ; Helmchen, F. ; Huisken, J. et al. Rapid 3D light-sheet microscopy with a tunable lens. Opt. Express 2013, 21, 21010–21026. DOI: 10.1364/OE.21.021010.
   PubMed Web of Science ®Google Scholar
• Rodgers, J. L.; Jones, J.; Bolleddu, S. I.; Vanthenapalli, S.; Rodgers, L. E.; Shah, K.; Karia, K.; Panguluri, S. K. Cardiovascular Risks Associated with Gender and Aging. J. Cardiovasc. Dev. Dis. 2019, 6, 19. DOI: 10.3390/jcdd6020019.
   PubMed Web of Science ®Google Scholar
• Packard, R. R. S.; Baek, K. I.; Beebe, T.; Jen, N.; Ding, Y.; Shi, F.; Fei, P.; Kang, B. J.; Chen, P.-H.; Gau, J.; et al. Automated Segmentation of Light-Sheet Fluorescent Imaging to Characterize Experimental Doxorubicin-Induced Cardiac Injury and Repair. Sci. Rep. 2017, 7, 8603. DOI: 10.1038/s41598-017-09152-x.
   PubMed Web of Science ®Google Scholar
• Baek, K. I.; Ding, Y.; Chang, C.-C.; Chang, M.; Sevag Packard, R. R.; Hsu, J. J.; Fei, P.; Hsiai, T. K. Advanced Microscopy to Elucidate Cardiovascular Injury and Regeneration: 4D Light-Sheet Imaging. Prog. Biophys. Mol. Biol. 2018, 138, 105–115. DOI: 10.1016/j.pbiomolbio.2018.05.003.
   PubMed Web of Science ®Google Scholar
• Dvornikov, A. V.; de Tombe, P. P.; Xu, X. Phenotyping Cardiomyopathy in Adult Zebrafish. Prog. Biophys. Mol. Biol. 2018, 138, 116–125. DOI: 10.1016/j.pbiomolbio.2018.05.013.
   PubMed Web of Science ®Google Scholar
• Marques, I. J.; Sanz-Morejon, A.; Mercader, N. Ventricular Cryoinjury as a Model to Study Heart Regeneration in Zebrafish. Methods Mol. Biol. 2021, 2158, 51–62.
   PubMedGoogle Scholar
• Ellman, D. G.; Slaiman, I. M.; Mathiesen, S. B.; Andersen, K. S.; Hofmeister, W.; Ober, E. A.; Andersen, D. C. Apex Resection in Zebrafish (Danio rerio) as a Model of Heart Regeneration: A Video-Assisted Guide. Int. J. Mol. Sci. 2021, 22, 5865. DOI: 10.3390/ijms22115865.
   PubMed Web of Science ®Google Scholar
• Zhang, R.; Han, P.; Yang, H.; Ouyang, K.; Lee, D.; Lin, Y.-F.; Ocorr, K.; Kang, G.; Chen, J.; Stainier, D. Y. R.; et al. In Vivo Cardiac Reprogramming Contribute to Zebrafish Heart Regeneration. Nature. 2013, 498, 497–501. DOI: 10.1038/nature12322.
   PubMed Web of Science ®Google Scholar
• Kaveh, A.; Bruton, F. A.; Buckley, C.; Oremek, M. E. M.; Tucker, C. S.; Mullins, J. J.; Taylor, J. M.; Rossi, A. G.; Denvir, M. A. Live Imaging of Heart Injury in Larval Zebrafish Reveals a Multi-Stage Model of Neutrophil and Macrophage Migration. Front. Cell Dev. Biol. 2020, 8, 579943. DOI: 10.3389/fcell.2020.579943.
   PubMed Web of Science ®Google Scholar
• Hamilton, J.; Franson, D.; Seiberlich, N. Recent Advances in Parallel Imaging for MRI. Prog. Nucl. Magn. Reson. Spectrosc. 2017, 101, 71–95. DOI: 10.1016/j.pnmrs.2017.04.002.
   PubMed Web of Science ®Google Scholar
• Saeed, M.; Van, T. A.; Krug, R.; Hetts, S. W.; Wilson, M. W. Cardiac MR Imaging: current Status and Future Direction. Cardiovasc. Diagn. Ther. 2015, 5, 290–310.
   PubMedGoogle Scholar
• Koth, J.; Maguire, M. L.; McClymont, D.; Diffley, L.; Thornton, V. L.; Beech, J.; Patient, R. K.; Riley, P. R.; Schneider, J. E. High-Resolution Magnetic Resonance Imaging of the Regenerating Adult Zebrafish Heart. Sci. Rep. 2017, 7, 2917. DOI: 10.1038/s41598-017-03050-y.
   PubMed Web of Science ®Google Scholar
• Kugler, E. C.; Rampun, A.; Chico, T. J. A.; Armitage, P. A. Segmentation of the Zebrafish Brain Vasculature from Light Sheet Fluorescence Microscopy Datasets. BioRxiv. 2020, 213843.
   Google Scholar
• Park, O. K.; Kwak, J.; Jung, Y. J.; Kim, Y. H.; Hong, H. S.; Hwang, B. J.; Kwon, S. H.; Kee, Y. 3D Light-Sheet Fluorescence Microscopy of Cranial Neurons and Vasculature during Zebrafish Embryogenesis. Mol. Cells. 2015, 38, 975–981.
   PubMed Web of Science ®Google Scholar
• Venkataraju, K. U.; Gornet, J.; Murugaiyan, G.; Wu, Z.; Osten, P. Development of Brain Templates for Whole Brain Atlases. Proc. SPIE 10865, Neural Imag. Sens. 2019, 2019, 1086511.
   Google Scholar
• Parthasarathy, R. Monitoring Microbial Communities Using Light Sheet Fluorescence Microscopy. Curr. Opin. Microbiol. 2018, 43, 31–37. DOI: 10.1016/j.mib.2017.11.008.
   PubMed Web of Science ®Google Scholar
• Diosdi, A.; Hirling, D.; Kovacs, M.; Toth, T.; Harmati, M.; Koos, K.; Buzas, K.; Piccinini, F.; Horvath, P. Cell Lines and Clearing Approaches: A Single-Cell Level 3D Light-Sheet Fluorescence Microscopy Dataset of Multicellular Spheroids. Data Brief. 2021, 36, 107090. DOI: 10.1016/j.dib.2021.107090.
   PubMed Web of Science ®Google Scholar
• Kim, J.; Wu, Q.; Zhang, Y.; Wiens, K. M.; Huang, Y.; Rubin, N.; Shimada, H.; Handin, R. I.; Chao, M. Y.; Tuan, T. L.; et al. PDGF Signaling is Required for Epicardial Function and Blood Vessel Formation in Regenerating Zebrafish Hearts. Proc. Natl. Acad. Sci. USA. 2010, 107, 17206–17210. DOI: 10.1073/pnas.0915016107.
   PubMed Web of Science ®Google Scholar
• Lai, S.-L.; Marín-Juez, R.; Moura, P. L.; Kuenne, C.; Lai, J. K. H.; Tsedeke, A. T.; Guenther, S.; Looso, M.; Stainier, D. Y. Reciprocal Analyses in Zebrafish and Medaka Reveal That Harnessing the Immune Response Promotes Cardiac Regeneration. Elife. 2017, 6, e25605. DOI: 10.7554/eLife.25605.
   PubMed Web of Science ®Google Scholar