5,112
Views
29
CrossRef citations to date
0
Altmetric
Research Article

Gut microbial diversity in health and disease: experience of healthy Indian subjects, and colon carcinoma and inflammatory bowel disease patients

, , , , , & show all
Article: 1322447 | Received 22 Dec 2016, Accepted 17 Apr 2017, Published online: 19 May 2017

References

  • Bhattacharya M. A historical exploration of Indian diets and a possible link to insulin resistance syndrome. Appetite. 2015;95:1–8.
  • Appleby PN, Key TJ. The long-term health of vegetarians and vegans. Proc Nutr Soc. 2016;75:287–293.
  • Sekirov I, Russell SL, Antunes LCM, et al. Gut microbiota in health and disease. Physiol Rev. 2010;90:859–904.
  • O’Hara AM, Shanahan F. The gut flora as a forgotten organ. EMBO Rep. 2006;7:688–693.
  • Von Mering C, Jensen LJ, Kuhn M, et al. STRING 7-recent developments in the integration and prediction of protein interactions. Nucleic Acids Res. 2007;35:D358–D362.
  • Mazmanian SK, Liu CH, Tzaianabos AO, et al. An immunomodulatory module of symbiotic bacteria directs maturation of the host immune system. Cell. 2005;122:107–118.
  • Salzman NH, Underwood MA, Bevins CL. Paneth cells, defensins, and the commensal microbiota: a hypothesis on intimate interplay at the intestinal mucosa. Semin Immunol. 2007;19:70–83.
  • Wagner CL, Taylor SN, Johnson D. Host factors in amniotic fluid and breast milk that contribute to gut maturation. Clin Rev Allergy Immunol. 2008;34:191–204.
  • Gill SR, Pop M, Deboy RT, et al. Metagenomic analysis of human distal gut microbiome. Science. 2006;312:1355–1359.
  • Ley RE, Backhed F, Turnbaugh P, et al. Obesity alters gut microbial ecology. Proc Natl Acad Sci USA. 2005;102:11070–11075.
  • Frank DN, Pace NR. Gastrointestinal microbiology enters the metagenomics era. Curr Opin Gastroenterol. 2008;24:4–10.
  • Hope ME, Hold GL, Kain R, et al. Sporadic colorectal cancer-role of the commensal microbiota. FEMS Microbiol Lett. 2005;244:1–7.
  • Carding S, Verbeke K, Vipond DT, et al. Dysbiosis of the gut microbiota in disease. Microb Ecol Health Dis. 2015;26:26191.
  • Gibson GR, Macfarlane GT, Cummings JH. Sulfate reducing bacteriaand hydrogen metabolism in the human large intestine. Gut. 1993;34:437–439.
  • Dijkstra G, Yuvaraj S, Jiang HQ, et al. Early bacterial dependent induction of inducible nitric oxide synthase (iNOS) in epithelial cells upon transfer of CD45RB(high) CD4(+) T-cells in a model for experimental colitis. Inflamm Bowel Dis. 2007;13:1467–1474.
  • Huttenhower C, Kostik AD, Xavier RJ. Inflammatory bowel disease as a model for translating the microbiome. Immunity. 2014;40:843–854.
  • Rooks MJ, Veiga P, Wardwell-Scott LH, et al. Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission. ISME J. 2014;8:1403–1417.
  • Scanlan PD, Shanahan F, Clune Y, et al. Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis. Environ Microbiol. 2008;10:789–798.
  • Moore WE, Moore LH. Intestinal floras of populations that have a high risk of colon cancer. Appl Environ Microbiol. 1995;61:3202–3207.
  • Huycke MM, Abrams V, Moore DR. Enterococcus faecalis produces extracellular superoxide and hydrogen peroxide that damages colonic epithelial cell DNA. Carcinogenesis. 2002;23:529–536.
  • Wang X, Allen TD, May RJ, et al. Enterococcus faecalis induces aneuploidy and tetraploidy in colonic epithelial cells through a bystander effect. Cancer Res. 2008;68:9909–9917.
  • Lorenz P, Eck J. Metagenomics and industrial applications. Nat Rev Microbiol. 2005;3:510–516.
  • Xiang L, Guo J, Da S, et al. Exploring and exploiting microbial diversity through metagenomics for natural product drug discovery. Curr Top Med Chem. 2009;9:1525–1535.
  • Anal AK, Singh H. Recent advances in microencapsulation of proniotics for industrial applications and targeted delivery. Trends in Food Science & Technology. 2007;18:240–251.
  • Balamurugan R, Janardhan HP, George G, et al. Bacterial succession in the colon during childhood and adolescence: molecular studies in a southern Indian village. Am J Clin Nutr. 2008;88:1643–1647.
  • Balamurugan R, George G, Kabeerdoss J, et al. Quantitative differences in intestinal Faecalibacterium prausnitzii in obese Indian children. Br J Nutr. 2010;103:335–338.
  • Kabeerdoss J, Devi RS, Mary RR, et al. Effect of yoghurt containing Bifidobacterium lactis Bb12® on fecl excretion of secretory immunoglobin A and human beta-defensin 2 in healthy adult volunteers. Nutr J. 2011;10:138.
  • Gupta SS, Mohammed MH, Ghosh TS, et al. Metagenome of the gut of the malnourished child. Gut Pathogens. 2011;3:7.
  • Shetty SA, Marathe NP, Shouche YS. Oppurtunities and challenges for gut microbiome studies in the Indian population. Microbiome. 2013;1:24.
  • Ashelford KE, Chuzhanova NA, Fry JC, et al. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol. 2005 Dec;71(12):7724–7736.
  • De Filippo C, Cavalieri D, Di Paola M, et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA. 2010;33:14691–14696.
  • Zimmer J, Lange B, Frick J-S, et al. A vegan or vegetarian diet substantially alters the human colonic faecal microbiota. Eur J Clin Nutr. 2012;66:53–60.
  • Ismail NA, Ragab SH, Elbaky AA, et al. Frequency of Firmicutes and Bacteroidetes in gut microbiota in obese and normal weight Egyptian children and adults. Arch Med Sci. 2011;7:501–507.
  • Turnbaugh PJ, Backhed F, Fulton L, et al. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe. 2008;3:213–223.
  • Kim AH, Gu W, Lee IA, et al. High fat diet-induced gut microbiota exacerbates inflammation and obesity in mice via the TLR4 signaling pathway. PLoS One. 2012;7(10).
  • Frank DN, St. Amand AL, Feldman RA, et al. Molecular phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA. 2007;104:13780–13785.
  • Soto LP, Frizzo SL, Bertozzi E, et al. Molecular microbial analysis of lactobacillus strains isolated from the gut of calves for potential probiotic use. Vet Med International. 2010.
  • Chen W, Liu F, Ling Z, et al. Human intestinal luman and mucosa associated microbiota in patients with colorectal carcinoma. PLoS One. 2012;6:e039743.
  • Wei H, Dong L, Wang T, et al. Structural shifts of gut microbiota as surrogate endpoints for monitoring host health changes induced by carcinogen exposure. FEMS Microbiol Ecol. 2010;73:577–586.
  • Zackular JP, Baxter NT, Iverson KD, et al. The gut microbiome modulates colon tumorigenesis. mBio. 2013;6:e00692–13.