The new understanding of Arabidopsis thaliana proteins associated with salinity

References

• Brewis , IA and Brennan , P . 2010 . Proteomics technologies for the global identification and quantification of proteins . Adv Protein Chem Struct Biol. , 80 : 1 – 44 .
   PubMed Web of Science ®Google Scholar
• Chinnusamy , V , Jagendorf , A and Zhu , JK . 2005 . Understanding and improving salt tolerance in plants . Crop Sci. , 45 : 437 – 448 .
   Web of Science ®Google Scholar
• Delahunty C , Yates JR. 3rd . 2005 . Protein identification using 2D-LC-MS/MS . Methods . 35 : 248 – 255 .
   PubMed Web of Science ®Google Scholar
• Epstein , E , Norlyn , JD , Rush , DW , Kingsbury , RW , Kelley , DB , Cunningham , GA and Wrona , AF . 1980 . Saline culture of crops, a genetic approach . Science. , 210 : 399 – 404 .
   PubMed Web of Science ®Google Scholar
• Groppa , MD and Benavides , MP . 2008 . Polyamines and abiotic stress, recent advances . Amino Acids. , 34 : 35 – 45 .
   PubMed Web of Science ®Google Scholar
• Gygi , SP , Rochon , Y , Franza , BR and Aebersold , R . 1999 . Correlation between protein and mRNA abundance in yeast . Mol Cell Biol. , 19 : 1720 – 1730 .
   PubMed Web of Science ®Google Scholar
• Hasegawa , M , Bressan , R and Pardo , JM . 2000a . The dawn of plant salt tolerance genetics . Trends Plant Sci. , 8 : 317 – 319 .
   Web of Science ®Google Scholar
• Hasegawa , PM , Bressan , RA , Zhu , JK and Bohnert , HJ . 2000b . Plant cellular and molecular responses to high salinity . Annu Rev Plant Physiol Plant Mol Biol. , 51 : 463 – 499 .
   PubMed Web of Science ®Google Scholar
• Horie , T , Hauser , F and Schroeder , JI . 2009 . HKT transporter-mediated salinity resistance mechanisms in Arabidopsis and monocot crop plants . Trends Plant Sci , 14 : 660 – 668 .
   PubMed Web of Science ®Google Scholar
• Horie , T and Schroeder , JI . 2004 . Sodium transporters in plants. Diverse genes and physiological functions . Plant Physiol. , 136 : 2457 – 2462 .
   PubMed Web of Science ®Google Scholar
• Huang , DW , Sherman , BT and Lempicki , RA . 2009 . Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources . Nat Protoc. , 4 : 44 – 57 .
   PubMed Web of Science ®Google Scholar
• Hussain , TM , Chandrasekhar , T , Hazara , M , Sultan , Z , Saleh , BK and Gopal , GR . 2008 . Recent advances in salt stress biology-a review . Biotech Mol Biol Rev. , 3 : 8 – 13 .
   Google Scholar
• Jiang , Y and Deyholos , MK . 2006 . Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes . BMC Plant Biol. , 6 : 25
   PubMed Web of Science ®Google Scholar
• Jiang , Y , Yang , B , Harris , NS and Deyholos , MK . 2007 . Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots . J Exp Bot. , 58 : 3591 – 3607 .
   PubMed Web of Science ®Google Scholar
• Katori , T , Ikeda , A , Iuchi , S , Kobayashi , M , Shinozaki , K , Maehashi , K , Sakata , Y , Tanaka , S and Taji , T . 2010 . Dissecting the genetic control of natural variation in salt tolerance of Arabidopsis thaliana accessions . J Exp Bot. , 61 : 1125 – 1138 .
   PubMed Web of Science ®Google Scholar
• Kosová , K , Vítámvás , P , Prášil , IT and Renaut , J . 2011 . Plant proteome changes under abiotic stress – contribution of proteomics studies to understanding plant stress response . J Proteomics. , 74 : 1301 – 1322 .
   PubMed Web of Science ®Google Scholar
• Li , J , Yang , H , Peer , WA , Richter , G , Blakeslee , J , Bandyopadhyay , A , Titapiwantakun , B , Undurraga , S , Khodakovskaya , M Richards , EL . 2005 . Arabidopsis H+−PPase AVP1 regulates auxin-mediated organ development . Science. , 310 : 121 – 125 .
   PubMed Web of Science ®Google Scholar
• Liu , F , Wang , H and Li , J . 2011 . An integrated bioinformatics analysis of mouse testis protein profiles with new understanding . BMB. , 44 : 347 – 351 .
   PubMed Web of Science ®Google Scholar
• Martinoia , E , Maeshima , M and Neuhaus , HE . 2007 . Vacuolar transporters and their essential role in plant metabolism . J Exp Bot. , 58 : 83 – 102 .
   PubMed Web of Science ®Google Scholar
• Møller , IS , Gilliham , M , Jha , D , Mayo , GM , Roy , SJ , Coates , JC , Haseloff , J and Tester , M . 2009 . Shoot Na+ exclusion and increased salinity tolerance engineered by cell type-specific alteration of Na+ transport in Arabidopsis . Plant Cell. , 21 : 2163 – 2178 .
   PubMed Web of Science ®Google Scholar
• Mooney , BP , Miernyk , JA , Greenlief , CM and Thelen , JJ . 2006 . Using quantitative proteomics of Arabidopsis roots and leaves to predict metabolic activity . Physiologia Plantarum. , 128 : 237 – 250 .
   Web of Science ®Google Scholar
• Munns , R . 2002 . Comparative physiology of salt and water stress . Plant Cell Environ. , 25 : 239 – 250 .
   PubMed Web of Science ®Google Scholar
• Munns , R and Tester , M . 2008 . Mechanisms of salinity tolerance . Annu Rev Plant Physiol. , 59 : 651 – 681 .
   Google Scholar
• Ndimba , BK , Chivasa , S , Simon , WJ and Slabas , AR . 2005 . Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry . Proteomics. , 5 : 4185 – 4196 .
   PubMed Web of Science ®Google Scholar
• Neumann , PM , Azaizeh , H and Leon , D . 1994 . Hardening of root cell walls, a growth inhibitory response to salinity stress . Plant Cell Environ. , 17 : 303 – 309 .
   Web of Science ®Google Scholar
• Paez-Valencia , J , Patron-Soberano , A , Rodriguez-Leviz , A , Sanchez-Lares , J , Sanchez-Gomez , C , Valencia-Mayoral , P , Diaz-Rosas , G and Gaxiola , R . 2011 . Plasma membrane localization of the type I H+−PPase AVP1 in sieve element-companion cell complexes from Arabidopsis thaliana . Plant Sci. , 181 : 23 – 30 .
   PubMed Web of Science ®Google Scholar
• Schneider , M , Tognolli , M and Bairoch , A . 2004 . The Swiss-Prot protein knowledgebase and ExPASy, providing the plant community with high quality proteomic data and tools . Plant Physiol Biochem. , 42 : 1013 – 1021 .
   PubMed Web of Science ®Google Scholar
• Shinozaki , K , Yamaguchi-Shinozaki , K and Seki , M . 2003 . Regulatory network of gene expression in the drought and cold stress responses . Curr Opin Plant Biol. , 6 : 410 – 417 .
   PubMed Web of Science ®Google Scholar
• Shoji , T , Suzuki , K , Abe , T , Kaneko , Y , Shi , H , Zhu , JK , Rus , A , Hasegawa , PM and Hashimoto , T . 2006 . Salt stress affects cortical microtubule organization and helical growth in Arabidopsis . Plant Cell Physiol. , 47 : 1158 – 1168 .
   PubMed Web of Science ®Google Scholar
• Srivas , R , Hannum , G , Ruscheinski , J , Ono , K , Wang , PL , Smoot , M and Ideker , T . 2011 . Assembling global maps of cellular function through integrative analysis of physical and genetic networks . Nat Protoc. , 6 : 1308 – 1323 .
   PubMed Web of Science ®Google Scholar
• Steudle , E. 2000 . Water uptake by roots, effects of water deficit . J Exp Bot. , 51 : 1531 – 1542 .
   PubMed Web of Science ®Google Scholar
• Taji , T , Seki , M , Satou , M , Sakurai , T , Kobayashi , M , Ishiyama , K , Narusaka , Y , Narusaka , M , Zhu , JK and Shinozaki , K . 2004 . Comparative genomics in salt tolerance between Arabidopsis and Arabidopsis-related halophyte salt cress using Arabidopsis microarray . Plant Physiol. , 135 : 1697 – 1709 .
   PubMed Web of Science ®Google Scholar
• Tester , M and Davenport , R . 2003 . Na+ tolerance and Na+ transport in higher plants . Ann Bot. , 91 : 503 – 527 .
   PubMed Web of Science ®Google Scholar
• Verbruggen , N and Hermans , C . 2008 . Proline accumulation in plants, a review . Amino Acids. , 35 : 753 – 759 .
   PubMed Web of Science ®Google Scholar
• Verbruggen , N , Villarroel , R and Van , MM . 1993 . Osmo regulation of a pyrroline-5-carboxylate reductase gene in Arabidopsis thaliana . Plant Physiol. , 103 : 771 – 781 .
   PubMed Web of Science ®Google Scholar
• Walden , R , Cordeiro , A and Tiburcio , AF . 1997 . Polyamines, small molecules triggering pathways in plant growth and development . Plant Physiol. , 113 : 1009 – 1013 .
   PubMed Web of Science ®Google Scholar
• Wiebe , BH , Eilers , RG , Eilers , WD and Brierley , JA . 2007 . Application of a risk indicator for assessing trends in dryland salinization risk on the Canadian prairies . Can J Soil Sci. , 87 : 213 – 224 .
   Web of Science ®Google Scholar
• Wurzinger , B , Mair , A , Pfister , B and Teige , M . 2011 . Cross-talk of calcium-dependent protein kinase and MAP kinase signaling . Plant Signal Behav. , 6 : 8 – 12 .
   PubMedGoogle Scholar
• Zhu , JK . 2000 . Genetic analysis of plant salt tolerance using Arabidopsis . Plant Physiol. , 124 : 941 – 948 .
   PubMed Web of Science ®Google Scholar
• Zhu , JK . 2002 . Salt and drought stress signal transduction in plants . Annu Rev Plant Biol. , 53 : 247 – 273 .
   PubMed Web of Science ®Google Scholar