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Plant-Environment Interactions

Mixed linear model association mapping for low chloride accumulation rate in oriental-type tobacco (Nicotiana tabaccum L.) germplasm

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Pages 666-672 | Received 15 Dec 2013, Accepted 08 Feb 2014, Published online: 13 Mar 2014

References

  • Abdurakhmonov IY, Abdukarimov A. 2008. Application of association mapping to understanding the genetic diversity of plant germplasm resources. Int J Plant Genom. 2008:1–18.
  • Andersen JR, Zein I, Wenzel G, Krützfeldt B, Eder J, Ouzunova M, Lübberstedt T. 2007. High levels of linkage disequilibrium and associations with forage quality at a Phenylalanine Ammonia-Lyase locus in European maize (Zea mays L.) inbreds. Theor Appl Genet. 114:307–319. 10.1007/s00122-006-0434-8
  • Bindler G, Plieske J, Bakaher N, Gunduz I, Ivanov N, Van der Hoeven R, Ganal M, Donini P. 2011. A high density genetic map of tobacco (Nicotiana tabacum L.) obtained from large scale microsatellite marker development. Theor Appl Genet. 123:219–230. 10.1007/s00122-011-1578-8
  • Bindler G, Van der Hoeven R, Gunduz I, Plieske J, Ganal M, Rossi L, Gadani F, Donini P. 2007. A microsatellite marker based linkage map of tobacco. Theor Appl Genet. 114:341–349. 10.1007/s00122-006-0437-5
  • Botstein D, White RL, Skolnick M, Davis RW. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet. 32:314–331.
  • Breseghello F, Sorrells M. 2006. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics. 172:1165–1177. 10.1534/genetics.105.044586
  • Darvishzadeh R, Alavi SR. 2011. Genetic analysis of chloride concentration in oriental tobacco genotypes. J Plant Nutr. 34:1070–1078. 10.1080/01904167.2011.555588
  • Darvishzadeh R, Alavi SR, Sarrafi A. 2010. Resistance to powdery mildew (Erysiphe cichoracearum DC.) in oriental and semi-oriental tobacco germplasms under field condition. J Crop Improv. 24:122–130.
  • Darvishzadeh R, Alavi SR, Sarrafi A. 2011. Genetic variability for chlorine concentration in oriental tobacco genotypes. Arch Agron Soil Sci. 57:167–177. 10.1080/03650340903286414
  • Darvishzadeh R, Poormohammad Kiani S, Huguet T, Sarrafi A. 2008. Genetic variation and identification of molecular marker associated with partial resistance to Phoma macdonaldii in gamma-irradiation-induced mutants of sunflower. Can J Plant Pathol. 30:106–114. 10.1080/07060660809507501
  • Davar R, Darvishzadeh R, Rezaee Danesh Y, Kholghi M, Azizi M, Shah DA. 2012. Single sequence repeat markers associated with partial resistance in sunflower to Phoma macdonaldii. Phytopathol Mediterr. 51:541–548.
  • Davis DL, Nielson MT. 1999. Tobacco: production, chemistry and technology. Malden (MA): Blackwell; p. 467.
  • D'hoop BB, Paulo MJ, Mank RA, Van Eck HJ, Van Eeuwijk FA. 2008. Association mapping of quality traits in potato (Solanum tuberosum L.). Euphytica. 161:47–60. 10.1007/s10681-007-9565-5
  • Dobrowolski MP, Forster JW. 2007. Linkage disequilibrium-based association mapping in forage species. In: Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva HN, editors. Association mapping in plants. New York: Springer; p. 197–210.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 14:2611–2620. 10.1111/j.1365-294X.2005.02553.x
  • Fricano A, Bakaher N, Del Corvo M, Piffanelli P, Donini P, Stella A, Nikolai V, Ivanov NV, Pozz C. 2012. Molecular diversity, population structure, and linkage disequilibrium in a worldwide collection of tobacco (Nicotiana tabacum L.) germplasm. BMC Genet. 13:18. 10.1186/1471-2156-13-18
  • Ghavami F, Elias EM, Mamidi S, Ansari O, Sargolzaei M, Adhikari T, Mergoum M, Kianian SF. 2011. Mixed model association mapping for Fusarium head blight resistance in Tunisian-derived durum wheat populations. G3: Genes/Genomes/Genetics. 1:209–218.
  • Godwin ID, Aitken EAB, Smith LW. 1997. Application of inter-simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis. 18:1524–1528. 10.1002/elps.1150180906
  • Hatami Maleki H, Karimzadeh G, Darvishzadeh R, Naghavi MR, Sarrafi A. 2013. Identification of QTLs associated with low chloride accumulation in oriental tobacco. Genetika. 45: 55–864.
  • Julio E, Denoyes-Rothan B, Verrier JL, Dorlhac de Borne F. 2006. Detection of QTLs linked to leaf and smoke properties in Nicotiana tabacum based on a study of 114 recombinant inbred lines. Mol Breed. 18:69–91. 10.1007/s11032-006-9019-0
  • Jun TH, Van K, Kim MY, Lee HS, Walker DR. 2007. Association analysis using SSR markers to find QTL for seed protein content in soybean. Euphytica. 162:179–191. 10.1007/s10681-007-9491-6
  • Kalia RK, Rai MK, Kalia S, Singh R, Dhawan AK. 2011. Microsatellite markers: an overview of the recent progress in plants. Euphytica. 177:309–334. 10.1007/s10681-010-0286-9
  • Kraakman ATW, Martínez F, Mussiraliev B, Van Eeuwijk FA, Niks RE. 2006. Linkage disequilibrium mapping of morphological, resistance, and other agronomically relevant traits in modern spring barley cultivars. Mol Breed. 17:41–58. 10.1007/s11032-005-1119-8
  • Li-Hua L, Mei-Xia C, Dong-Xin Z, Shun-Hui C, Ai-Fen T, Yan-Kun L, Hong-Bo MA, Jian-Min QA, Yu-Chun G. 2011. QTL Analysis of six important traits in tobacco (Nicotiana tabacum L.). Acta Agronomica Sinica. 37:1577–1584. 10.3724/SP.J.1006.2011.01577
  • Moon HS, Nifong JM, Nicholson JH, Heineman A, Lion K, Van der Hoeven R, Hayes AJ, Lewis RS. 2009. Microsatellite-based analysis of tobacco (Nicotiana tabacum L.) genetic resources. Crop Sci. 49:2149–2159. 10.2135/cropsci2009.01.0024
  • Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang Z, Costich DE, Buckler ES. 2009. Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell. 21:2194–2202. 10.1105/tpc.109.068437
  • Parrisseaux B, Bernardo R. 2004. In silico mapping of quantitative trait loci in maize. Theor App Genet. 109:508–514. 10.1007/s00122-004-1666-0
  • Pritchard JK, Stephanes M, Rosenberg NA, Donnelly P. 2000. Association mapping in structured populations. Am J Hum Genet. 67:170–181. 10.1086/302959
  • Rafalski A, Morgante M. 2004. Corn and humans: recombination and linkage disequilibrium in two genomes of similar size. Trends Genet. 20:103–111. 10.1016/j.tig.2003.12.002
  • Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. 2002. The genetic structure of human populations. Science. 298:2381–2385. 10.1126/science.1078311
  • Russo MA, Ficco DBM, Marone D, De Vita P, Vallega V, Rubies-Autonel C, Ratt, C, Ferragonio P, Giovanniello V, Pecchioni N, et al. 2012. A major QTL for resistance to soil-borne cereal mosaic virus derived from an old Italian durum wheat cultivar. J Plant Interact. 7:290–300. 10.1080/17429145.2011.640437
  • Saeed A, Darvishzadeh R, Basirnia A. 2013. Simple sequence repeat markers associated with agro-morphological traits in chickpea (Cicer arietinum L.). Zemdirbyste-Agriculture. 100:433–440. 10.13080/z-a.2013.100.055
  • Sorkheh K, Malysheva-Otto LV, Wirthensohn MG, Tarkesh-Esfahani S, Martínez-Gómez P. 2008. Linkage disequilibrium, genetic association mapping and gene localization in crop plants. Genet Mol Biol. 31:805–814. 10.1590/S1415-47572008005000005
  • Thornsberry JM, Goodman MM, Doebley J, Kresovich S, Nielsen D, Buckler ES. 2001. Dwarf8 polymorphisms associate with variation in flowering time. Nat Genet. 28:286–289. 10.1038/90135
  • Wilcox PL, Echt EC, Burdon RD. 2007. Gene-assisted selection: applications of association genetics for forest tree breeding. In: Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva HN, editors. Association mapping in plants. New York: Springer; p. 211–247.
  • Yan J, Shan T, Warburton M, Buckler E, McMullen M, Crouch J. 2009. Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS ONE. 4:e8451. 10.1371/journal.pone.0008451
  • Yu J.M, Buckler ES. 2006. Genetic association mapping and genome organization of maize. Curr Opin Biotech. 17:155–160. 10.1016/j.copbio.2006.02.003
  • Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M. 2006. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet. 38:203–208. 10.1038/ng1702
  • Zhang J, Hao C, Ren Q, Chang X, Liu G, Jing R. 2011. Association mapping of dynamic developmental plant height in common wheat. Planta. 234:891–902. 10.1007/s00425-011-1434-8
  • Zhang Q, Wu C, Ren F, Li Y, Zhang C. 2012. Association analysis of important agronomical traits of maize inbred lines with SSRs. Aust J Crop Sci. 6:1131–1138.
  • Zhu CM, Gore E, Buckler S, Yu J. 2008. Status and prospects of association mapping in plants. Plant Genome. 1:5–20. 10.3835/plantgenome2008.02.0089