1,774
Views
8
CrossRef citations to date
0
Altmetric
Plant-Environment Interactions

A plant transformation system designed for high throughput genomics in Gossypium hirsutum to study root–organism interactions

, , , , , , & show all
Pages 11-20 | Received 03 Oct 2014, Accepted 04 Jan 2015, Published online: 03 Feb 2015

References

  • Barton KA, Binns AN, Matzke AJ, Chilton M-D. 1983. Regeneration of intact tobacco plants containing full length copies of genetically engineered T-DNA, and transmission of T-DNA to R1 progeny. Cell. 32:1033–1043.
  • Bernard P, Couturier M. 1991. The 41 Carboxy-terminal residues of the Mini-F plasmid ccdA protein are sufficient to antagonize the killer activity of the CcdB protein. Mol Gen Genet. 226:297–304.
  • Bevan MW, Flavell RB, Chilton M-D. 1983. A chimeric antibiotic resistance gene as a selectable marker for plant cell transformation. Nature. 304:184–187.
  • Bhattacharyya S, Dey N, Maiti IB. 2002. Analysis of cis-sequence of subgenomic transcript promoter from the Figwort mosaic virus and comparison of promoter activity with the cauliflower mosaic virus promoters in monocot and dicot cells. Virus Res. 90:47–62.
  • Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M, et al. 2000. Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat Biotechnol. 18:630–634.
  • Collier R, Fuchs B, Walter N, Kevin Lutke W, Taylor CG. 2005. Ex vitro composite plants: an inexpensive, rapid method for root biology. Plant J. 43:449–457.
  • Crane C, Wright E, Dixon RA, Wang ZY. 2006. Transgenic Medicago truncatula plants obtained from Agrobacterium tumefaciens-transformed roots and Agrobacterium rhizogenes-transformed hairy roots. Planta. 223:1344–1354.
  • Curtis MD, Grossniklaus U. 2003. A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133:462–469.
  • Dong X, Stothard P, Forsythe IJ, Wishart DS. 2004. PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Res. 32(Web Server issue):W660–W664.
  • Elmayan T, Tepfer M. 1995. Evaluation in tobacco of the organ specificity and strength of the rolD promoter, domain A of the 35S promoter and the 35S2 promoter. Transgenic Res. 4:388–396.
  • Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, et al. 2004. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32:D258–D261.
  • Haseloff J, Siemering KR, Prasher DC, Hodge S. 1997. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proc Natl Acad Sci USA. 94:2122–2127.
  • Hofgen R, Willmitzer L. 1988. Storage of competent cells for Agrobacterium transformation. Nucleic Acids Res. 16:9877
  • Kim HJ, Murai N, Fang DD, Triplett BA. 2011. Functional analysis of Gossypium hirsutum cellulose synthase catalytic subunit 4 promoter in transgenic Arabidopsis and cotton tissues. Plant Sci. 180:323–332.
  • Klink VP, Kim K-H, Martins VE, MacDonald MH, Beard HS, Alkharouf NW, Lee S-K, Park S-C, Matthews BF. 2009. A correlation between host-mediated expression of parasite genes as tandem inverted repeats and abrogation of the formation of female Heterodera glycines cysts during infection of Glycine max. Planta. 230:53–71.
  • Klink VP, MacDonald MH, Martins VE, Park S-C, Kim K-H, Baek S-H, Matthews BF. 2008. MiniMax, a new diminutive Glycine max variety, with a rapid life cycle, embryogenic potential and transformation capabilities. Plant Cell Tiss Org Cult. 92:183–195.
  • Klink VP, Thibaudeau G. 2014. Laser microdissection of ultrathin sections for studying plant-pathogen developmental processes at single cell resolution. J Plant Interact. 9:610–617.
  • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 25:402–408.
  • Matsye PD, Kumar R, Hosseini P, Jones CM, Tremblay A, Alkharouf NW, Matthews BF, Klink VP. 2011. Mapping cell fate decisions that occur during soybean defense responses. Plant Mol Biol. 77:513–528.
  • Matsye PD, Lawrence GW, Youssef RM, Kim K-H, Matthews BF, Lawrence KS, Klink VP. 2012. The expression of a naturally occurring, truncated allele of an α-SNAP gene suppresses plant parasitic nematode infection. Plant Mol Biol. 80:131–155.
  • Matthews BF, Beard H, Brewer E, Kabir S, MacDonald MH, Youssef RM. 2014. Arabidopsis genes, AtNPR1, AtTGA2 and AtPR-5, confer partial resistance to soybean cyst nematode (Heterodera glycines) when overexpressed in transgenic soybean roots. BMC Plant Biol. 14:96.
  • Matthews BF, Beard H, MacDonald MH, Kabir S, Youssef RM, Hosseini P, Brewer E. 2013. Engineered resistance and hypersusceptibility through functional metabolic studies of 100 genes in soybean to its major pathogen, the soybean cyst nematode. Planta. 237:1337–1357.
  • Murashige T, Skoog F. 1962. A revised medium for rapid growth and bio-assays with tobacco tissue cultures. Physiol Plantarum. 15:473–497.
  • Pant SR, Krishnavajhala A, McNeece BT, Lawrence GW, Klink VP. 2014. The syntaxin 31-induced gene, LESION SIMULATING DISEASE1 (LSD1), functions in Glycine max defense to the root parasite Heterodera glycines. Plant Signal Behav.
  • Pant SR, Matsye PD, McNeece BT, Sharma K, Krishnavajhala A, Lawrence GW, Klink VP. 2014. Syntaxin 31 functions in Glycine max resistance to the plant parasitic nematode Heterodera glycines. Plant Mol Biol. 85:107–121.
  • Risso D, Ngai J, Speed TP, Dudoit S. 2014. Normalization of RNA-seq data using factor analysis of control genes or samples. Nat Biotechnol. 32:896–902.
  • Scheideler M, Schlaich NL, Fellenberg K, Beissbarth T, Hauser NC, Vingron M, Slusarenko AJ, Hoheisel JD. 2002. Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays. J Biol Chem. 277:10555–10561.
  • Tepfer D. 1984. Transformation of several species of higher plants by Agrobacterium rhizogenes: sexual transmission of the transformed genotype and phenotype. Cell. 37:959–967.
  • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 25:1105–1111.
  • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 7:562–578.
  • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 28:511–515.
  • Triplett BA, Moss SC, Bland JM, Dowd MK. 2008. Induction of hairy root cultures from Gossypium hirsutum and Gossypium barbadense to produce gossypol and related compounds. In Vitro Cell Dev Biol Plant. 44:508–517.
  • Wahby I, Caba JM, Ligero F. 2013. Agrobacterium infection of hemp (Cannabis sativa L.): establishment of hairy root cultures. J Plant Interact. 8:312–320.
  • Wang X, Tang Q, Dong L, Dong Y, Su Y, Jia S, Wang Z. 2014. Construction of a standard reference plasmid containing seven target genes for the detection of transgenic cotton. Plasmid. 74:39–44.
  • White FF, Taylor BH, Huffman GA, Gordon MP, Nester EW. 1985. Molecular and genetic analysis of the transferred DNA regions of the root-inducing plasmid of Agrobacterium rhizogenes. J Bacteriol. 164:33–44.
  • Zdravković-Korać S, Muhovski Y, Druart P, Calić D, Radojević L. 2004. Agrobacterium rhizogenes-mediated DNA transfer to Aesculus hippocastanum L. and the regeneration of transformed plants. Plant Cell Rep. 22:698–704.