Temporal behavior of wheat – Puccinia striiformis interaction prompted defense-responsive genes

References

• Ali S, Ganai BA, Kamili AN, Bhat AA, Mir ZA, Bhat JA, Tyagi A, Islam ST, Mushtaq M, Yadav P, et al. 2018. Pathogenesis-related proteins and peptides as promising tools for engineering plants with multiple stress tolerance. Microbiolo Res. 212:29–37.
   PubMed Web of Science ®Google Scholar
• Andersen CL, Ledet-Jensen J, Orntoft T. 2004. Normalization of real time quantitative RT-PCR data: a model based variance estimation approach to identify genes suited for normalization-applied to bladder- and colon-cancer data-sets. Cancer Res. 64:5245–5250.
   PubMed Web of Science ®Google Scholar
• Besbes F, Habegger R, Schwab W. 2019. Induction of PR-10 genes and metabolites in strawberry plants in response to Verticillium dahliae infection. BMC Plant Biol. 19(1):128.
   PubMedGoogle Scholar
• Casassola A, Brammer SP, Chaves MS, Martinelli JA, Stefanato F, Boyd LA. 2015. Changes in gene expression profiles as they relate to the adult plant leaf rust resistance in the wheat cv. Toropi. Physiological and Molecular Plant Pathology. 89:49–54.
   PubMed Web of Science ®Google Scholar
• Cho JI, Ryoo N, Ko S, Lee SK, Lee J, Jung KH, Lee YH, Bhoo SH, Winderickx J, An G, Hahn TR. 2006. Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa). Planta. 224:598–611.
   PubMed Web of Science ®Google Scholar
• Dmochowska-Boguta M, Alaba S, Yanushevska Y, Piechota U, Lasota E, Nadolska-Orczyk A, Karlowski WM, Orczyk W. 2015. Pathogen-regulated genes in wheat isogenic lines differing in resistance to brown rust Puccinia triticina. BMC Genom. 16:742. doi:10.1186/s12864-015-1932-3.
   PubMed Web of Science ®Google Scholar
• Dubin H, Brennan JP. 2009. Combating stem and leaf rust of wheat: historical perspective, impacts, and lessons learned. International Food Policy Research Institute. IFPRI Discussion Paper No. 00910. 2020 Vision Initiative. http://www.ifpri.org/millionsfed
   Google Scholar
• Ebrahim Sku, Singh B. 2011. Pathogenesis related (PR) proteins in plant defense mechanism. Science Against Microbial Pathogens. 2:1043–1054.
   Google Scholar
• Filipenko EA, Kochetov AV, Kanayama Y, Malinovsky VI, Shumny VK. 2013. PR-proteins with ribonuclease activity and plant resistance against pathogenic fungi. Russ J Genet Appl Res. 3(6):474–480.
   Google Scholar
• Finkina EI, Melnikova DN, Bogdanov IV. 2016. Lipid transfer proteins as components of the plant innate immune system: structure, functions, and applications. Acta Naturae (англоязычная версия). 8(2):46–61.
   Web of Science ®Google Scholar
• Fleury C, Gracy J, Gautier MF, Pons JL, Dufayard JF, Labesse G, Ruiz M, De Lamotte F. 2019. Comprehensive classification of the plant non-specific lipid transfer protein super family towards its sequence–structure–function analysis. PeerJ. 7:e7504.
   PubMed Web of Science ®Google Scholar
• Gangwar OP, Kumar S, Bhardwaj SC, Prasad P, Lata C, Adhikari S, Singh GP. 2022. Elucidating the population structure and genetic diversity of Indian Puccinia striiformis f. sp. tritici pathotypes based on microsatellite markers. Phytopathology. doi:10.1094/PHYTO-10-21-0422-R.
   PubMed Web of Science ®Google Scholar
• Gangwar OP, Kumar S, Prasad P, Bhardwaj SC. 2016. Virulence pattern and emergence of new pathotypes in Puccinia striiformis f. sp. tritici during 2011-15 in India. Indian Phytopathol. 69:178–185.
   Google Scholar
• Henningsen EC, Omidvar V, Della Coletta R, Michno JM, Gilbert E, Li F, Miller ME, Myers CL, Gordon SP, Vogel JP, Steffenson BJ. 2021. Identification of candidate susceptibility genes to Puccinia graminis f. sp. tritici in wheat. Front in Plant sci. 12:657791. doi:10.3389/fpls.2021.657796.
   Web of Science ®Google Scholar
• Hovmøller MS, Walter S, Justesen AF. 2010. Escalating threat of wheat rusts. Science. 329(5990):369–369.
   PubMed Web of Science ®Google Scholar
• Jones JD, Dangl JL. 2006. The plant immune system. Nature. 444(7117):323.
   PubMed Web of Science ®Google Scholar
• Kidwai M, Ahmad IZ, Chakrabarty D. 2020. Class III peroxidase: an indispensable enzyme for biotic/abiotic stress tolerance and a potent candidate for crop improvement. Plant Cell Repo. 39(11):1381–1393.
   PubMed Web of Science ®Google Scholar
• Lata C, Kumar A, Gangwar OP, Prasad P, Adhikari S, Kumar S, Kulshreshtha N, Bhardwaj SC. 2021. Multiplex PCR assay for the detection of Lr24 and Lr68 in salt tolerant wheat genotypes. Cereal Res Commun. doi:10.1007/s42976-021-00218-1.
   PubMed Web of Science ®Google Scholar
• Li G, Chen T, Zhang Z, Li B, Tian S. 2020. Roles of aquaporins in plant-pathogen interaction. Plants. 9(1134):1-9. doi: 10.3390/plants9091134.
   Google Scholar
• Li P, Zhang L, Mo X, Ji H, Bian H, Hu Y, Majid T, Long J, Pang H, Tao Y, Ma J. 2019. Rice aquaporin PIP1; 3 and harpin Hpa1 of bacterial blight pathogen cooperate in a type III effector translocation. J exp bot. 70(12):3057–3073.
   PubMed Web of Science ®Google Scholar
• Liu Q, Luo L, Zheng L. 2018. Lignins: biosynthesis and biological functions in plants. Int J Mol sci. 19(2):335. doi:10.3390/ijms19020335.
   PubMed Web of Science ®Google Scholar
• McGrann GRD, Townsend BJ, Antoniw JF, Asher MJC, MutasaGottgens ES. 2009. Barley elicits a similar early basal defence response during host and nonhost interactions with polymyxa root parasites. Eur J Plant Pathol. 123:5–15.
   Web of Science ®Google Scholar
• Moldenhauer J, Pretorius ZA, Moerschbacher BM, Prins R, van der Westhuizen AJ. 2008. Histopathology and PR-protein markers provide insight into adult plant resistance to stripe rust of wheat. Mol Plant Pathol. 9(2):137–145.
   PubMed Web of Science ®Google Scholar
• Morkunas I, Ratajczak L. 2014. The role of sugar signaling in plant defense responses against fungal pathogens. Acta Physiologia Plantarum. 36:1607–1619.
   Web of Science ®Google Scholar
• Oide S, Bejai S, Staal J, Guan N, Kaliff M, Dixelius C. 2013. A novel role of PR2 in abscisic acid (ABA) mediated, pathogen-induced callose deposition in Arabidopsis thaliana. New Phytol. 200(4):1187–1199.
   PubMed Web of Science ®Google Scholar
• Paolacci A, Tanzarella O, Porceddu E, Ciaffi M. 2009. Identification and validation of reference genes for quantitative RT-PCR normalization in wheat. BMC Mol Biol. 10(1):11–27. doi:10.1186/1471-2199-10-11.
   PubMedGoogle Scholar
• Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. 2004. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: Best Keeper—excel-based tool using pair-wise correlations. Biotechnol Lett. 26:509–515.
   PubMed Web of Science ®Google Scholar
• Pospíšil P. 2012. Molecular mechanisms of production and scavenging of reactive oxygen species by photosystem II. Biochim Biophys Acta (BBA)-Bioenergetics. 1817(1):218–231.
   PubMed Web of Science ®Google Scholar
• Prasad P, Savadi S, Bhardwaj SC, Kashyap PL, Gangwar OP, Khan H, Kumar Subodh, Kumar Ravinder, Patil V. 2019. Stage-specific reprogramming of defense responsive genes during Lr24-mediated leaf rust resistance in wheat. J Plant Pathol. 101(2):283–293.
   Web of Science ®Google Scholar
• Prashar M, Bhardwaj SC, Jain SK, Datta D. 2007. Pathotypic evolution in Puccinia striiformis in India during 1995–2004. Aust J Agric Res. 58(6):602–604.
   Google Scholar
• Prashar M, Bhardwaj SC, Jain SK, Gangwar OP. 2015. Virulence diversity in Puccinia striiformis f.sp. tritici causing yellow rust on wheat (Triticum aestivum) in India. Ind Phytopathol. 68:129–133.
   Google Scholar
• Rieu I, Powers SJ. 2009. Real-time quantitative RT-PCR: design, calculations and statistics. Plant Cell. 21:1031–1033.
   PubMed Web of Science ®Google Scholar
• Roelfs AP. 1984. Race specificity and methods of study. In: Bushnell WR, Roelfs AP, editor. The cereal rusts vol. I. origins, specificity, structure, and physiology. Orlando: Acadamic Press; p. 132–164.
   Google Scholar
• Roelfs AP, Singh RP, Saari EE. 1992. Rust diseases of wheat: concepts and methods of disease management. Mexico: CIMMYT.
   Google Scholar
• Savadi S, Prasad P, Bhardwaj SC, Kashyap PL, Gangwar OP, Khan H, Kumar S. 2018. Temporal transcriptional changes in SAR and sugar transport-related genes during wheat and leaf rust pathogen interactions. J Plant Growth Regul. 37(3):826–839.
   Web of Science ®Google Scholar
• Singh R, Tiwari JK, Sharma V, Singh BP, Rawat S. 2014. Role of pathogen related protein families in defense mechanism with potential role in applied biotechnology.
   Google Scholar
• Singh RP, Singh PK, Rutkoski J, Hodson DP, He X, Jørgenssen LN, Hovmøller MS, Huerta-Espino J. 2016. Disease impact on wheat yield potential and prospects of genetic control. Annual Review of Phytopathology. 54:13–14.
   Web of Science ®Google Scholar
• Stakman EC, Stewart DM, Loegering WQ. 1962. Identification of physiologic races of Puccinia graminis tritici. US Department of Agriculture, ARSE-617. US Gov Printing Office, Washington, p 53.
   Google Scholar
• Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, HuertaCepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M. 2015. STRING v10: protein–protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 43(D1):D447–DD45.
   PubMed Web of Science ®Google Scholar
• Tian S, Wang X, Li P, Wang H, Ji H, Xie J, Qiu Q, Shen D, Dong H. 2016. Plant aquaporin AtPIP1;4 links apoplastic H2O2 induction to disease immunity pathways. Plant Physiol 171:1635–1650.
   PubMed Web of Science ®Google Scholar
• Tu Y, Rochfort S, Liu Z, Ran Y, Griffith M, Badenhorst P, Louie GV, Bowman ME, Smith KF, Noel JP, Mouradov A. 2010. Functional analyses of caffeic acid O-methyltransferase and cinnamoyl-CoA-reductase genes from perennial ryegrass (Lolium perenne). Plant Cell. 22(10):3357–3373.
   PubMed Web of Science ®Google Scholar
• Vance CP, Kirk TK, Sherwood RT. 1980. Lignification as a mechanism of disease resistance. Ann Rev Phytopathol. 18(1):259–288.
   Google Scholar
• Wang F, Yuan S, Wu W, Yang Y, Cui Z, Wang H, Liu D. 2020. TaTLP1 interacts with TaPR1 to contribute to wheat defense responses to leaf rust fungus. PLoS Genet. 16(7):e1008713. doi:10.1007/s42976-021-00218-1.
   PubMed Web of Science ®Google Scholar
• Wang Y, Yu C, Cheng Y, Yao F, Long L, Wu Y, Li J, Li H, Wang J, Jiang Q, Li W. 2021. Genome-wide association mapping reveals potential novel loci controlling stripe rust resistance in a Chinese wheat landrace diversity panel from the southern autumn-sown spring wheat zone. BMC Genom. 22:34. doi:10.1186/s12864-020-07331-1.
   PubMed Web of Science ®Google Scholar
• Wesp-Guterres C, Martinelli JA, Graichen FA, Chaves MS. 2013. Histopathology of durable adult plant resistance to leaf rust in the Brazilian wheat variety Toropi. Eur J Plant Pathol. 137(1):181–196.
   Web of Science ®Google Scholar
• Yu X, Wang X, Wang C, Chen X, Qu Z, Yu X, Han Q, Zhao J, Guo J, Huang L, Kang Z. 2010. Wheat defense genes in fungal (Puccinia striiformis) infection. Funct Integr Genom. 10(2):227–239. DOI:10.1007/s10142-010-0161-8.
   PubMed Web of Science ®Google Scholar
• Zhang H, Qiu Y, Yuan C, Chen X, Huang L. 2018. Fine-tuning of PR genes in wheat responding to different Puccinia rust species. J Plant Physiol Pathol. 6(2):2.
   Google Scholar
• Zhang L, Chen L, Dong H. 2019. Plant aquaporins in infection by and immunity against pathogens – a critical review. Front Plant Science. 10:632.
   PubMed Web of Science ®Google Scholar
• Zhang L, Dickinson M. 2001. Fluorescence from rust fungi: a simple and effective method to monitor the dynamics of fungal growth in planta. Physiol Mol Plant Pathol. 59(3):137–141.
   Web of Science ®Google Scholar